Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81406 * 103.00179 * 2 1 4 4 H 1.09008 * 109.46893 * 305.00546 * 3 2 1 5 5 C 1.52998 * 109.46846 * 64.99972 * 3 2 1 6 6 C 1.53000 * 109.47383 * 185.00296 * 3 2 1 7 7 C 1.53005 * 109.47013 * 64.99878 * 6 3 2 8 8 N 1.46900 * 109.46989 * 180.02562 * 7 6 3 9 9 C 1.48645 * 110.99887 * 290.12791 * 8 7 6 10 10 C 1.54644 * 104.63447 * 201.48807 * 9 8 7 11 11 C 1.53254 * 104.67052 * 23.68296 * 10 9 8 12 12 C 1.53604 * 111.08651 * 120.48178 * 11 10 9 13 13 C 1.54708 * 101.51049 * 144.99163 * 12 11 10 14 14 N 1.46881 * 105.51907 * 335.48046 * 13 12 11 15 15 C 1.46500 * 124.37036 * 196.78572 * 14 13 12 16 16 C 1.52997 * 109.47473 * 89.99839 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.34751 * 111.25765 * 17.04800 * 14 13 12 26 26 O 1.21272 * 125.13544 * 178.76061 * 25 14 13 27 27 C 1.48804 * 110.99856 * 174.51069 * 8 7 6 28 28 H 1.09000 * 109.47315 * 59.99414 * 1 2 3 29 29 H 1.08999 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47027 * 299.99794 * 1 2 3 31 31 H 1.09003 * 109.47160 * 60.00164 * 5 3 2 32 32 H 1.08998 * 109.47112 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47198 * 300.00093 * 5 3 2 34 34 H 1.09004 * 109.46643 * 305.00502 * 6 3 2 35 35 H 1.08997 * 109.46839 * 185.00088 * 6 3 2 36 36 H 1.09000 * 109.46648 * 60.00081 * 7 6 3 37 37 H 1.08999 * 109.47281 * 300.00305 * 7 6 3 38 38 H 1.09004 * 110.40676 * 82.70536 * 9 8 7 39 39 H 1.08996 * 110.41017 * 320.28040 * 9 8 7 40 40 H 1.08992 * 110.39990 * 264.88012 * 10 9 8 41 41 H 1.09002 * 110.39536 * 142.47386 * 10 9 8 42 42 H 1.09005 * 111.02209 * 26.93487 * 12 11 10 43 43 H 1.09000 * 111.01834 * 263.04469 * 12 11 10 44 44 H 1.09001 * 110.23638 * 216.46681 * 13 12 11 45 45 H 1.09000 * 110.23730 * 94.49184 * 13 12 11 46 46 H 1.09002 * 109.47129 * 329.99581 * 15 14 13 47 47 H 1.08998 * 109.46845 * 210.00388 * 15 14 13 48 48 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 49 49 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 50 50 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 51 51 H 1.08998 * 110.45750 * 39.48196 * 27 8 7 52 52 H 1.08995 * 110.45452 * 276.91488 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7370 1.9412 -0.1258 7 6 4.1988 1.4192 -1.4879 8 7 5.6534 1.5854 -1.6084 9 6 6.0173 3.0216 -1.7292 10 6 7.4176 3.0160 -2.3853 11 6 7.4942 1.6762 -3.1253 12 6 7.7215 1.8880 -4.6296 13 6 8.6229 0.6801 -4.9787 14 7 9.2872 0.3094 -3.7223 15 6 10.4787 -0.5387 -3.6356 16 6 11.7327 0.3351 -3.7042 17 6 12.9583 -0.5373 -3.6144 18 1 12.8533 -1.6079 -3.5184 19 6 14.2137 0.0313 -3.6558 20 7 15.2832 -0.7301 -3.5779 21 14 14.3954 1.8829 -3.8226 22 1 14.4322 2.5002 -2.4724 23 1 15.6560 2.1936 -4.5433 24 1 13.2426 2.4268 -4.5843 25 6 8.6559 0.8453 -2.6592 26 8 8.9784 0.6835 -1.5014 27 6 6.1582 0.9692 -2.8653 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2354 1.9149 2.1492 32 1 1.9884 3.4635 1.3076 33 1 0.6636 2.2778 1.3969 34 1 4.2339 1.3803 0.6658 35 1 3.9902 2.9977 -0.0367 36 1 3.7018 1.9800 -2.2794 37 1 3.9456 0.3628 -1.5770 38 1 6.0610 3.4867 -0.7443 39 1 5.3017 3.5428 -2.3651 40 1 8.1945 3.0739 -1.6230 41 1 7.5111 3.8440 -3.0880 42 1 8.2384 2.8290 -4.8183 43 1 6.7800 1.8443 -5.1772 44 1 9.3629 0.9655 -5.7265 45 1 8.0173 -0.1493 -5.3440 46 1 10.4825 -1.2457 -4.4652 47 1 10.4677 -1.0852 -2.6926 48 1 11.7289 1.0421 -2.8746 49 1 11.7436 0.8815 -4.6473 50 1 16.1664 -0.3301 -3.6067 51 1 5.4640 1.1530 -3.6852 52 1 6.3137 -0.1010 -2.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273122285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -61.121144 kcal Electronic energy + Delta-G solvation = -27913.176127 eV Core-core repulsion = 24230.316328 eV Total energy + Delta-G solvation = -3682.859799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09423 -39.32218 -37.46942 -36.63906 -35.51423 -34.11786 -32.42594 -30.67158 -30.13616 -29.34828 -28.49131 -27.04718 -25.06665 -23.87257 -23.23928 -22.69209 -21.94730 -21.36109 -19.90818 -19.07444 -17.64986 -17.34417 -17.18804 -16.66069 -16.52572 -16.35298 -16.04330 -15.71554 -15.26613 -15.13699 -14.92617 -14.76223 -14.65206 -14.43995 -14.37627 -14.00877 -13.82722 -13.76112 -13.53286 -13.47519 -13.20182 -13.01323 -12.95481 -12.63886 -12.60715 -12.34539 -12.25634 -12.11605 -12.06226 -12.01798 -11.84836 -11.78379 -11.63316 -11.57342 -11.50360 -10.83579 -10.64496 -10.58148 -9.57520 -9.35038 -8.65214 -8.35122 -6.40259 0.78668 1.29984 1.32550 1.43514 1.61332 1.71039 2.14882 2.30696 2.90823 2.99570 3.27455 3.47501 3.52683 3.81755 3.91773 3.96819 4.07501 4.12002 4.22410 4.24974 4.33615 4.35992 4.36966 4.40052 4.44025 4.49866 4.59181 4.61920 4.65800 4.71416 4.75100 4.77820 4.78497 4.83892 4.86825 4.93512 4.99585 5.00909 5.06425 5.10588 5.17995 5.18365 5.22653 5.28040 5.28995 5.48207 5.73841 5.89273 6.13690 6.18722 6.30942 6.65832 7.23102 7.27933 8.81215 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.002078 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.037474 B =13470.692374 C =13613.527145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.320 6.320 3 C -0.039 4.039 4 H 0.100 0.900 5 C -0.145 4.145 6 C -0.091 4.091 7 C 0.051 3.949 8 N -0.536 5.536 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.095 4.095 12 C -0.108 4.108 13 C 0.090 3.910 14 N -0.624 5.624 15 C 0.147 3.853 16 C -0.011 4.011 17 C -0.534 4.534 18 H 0.038 0.962 19 C 0.009 3.991 20 N -0.945 5.945 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.275 1.275 24 H -0.245 1.245 25 C 0.512 3.488 26 O -0.577 6.577 27 C 0.068 3.932 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.045 0.955 48 H -0.004 1.004 49 H 0.032 0.968 50 H 0.268 0.732 51 H 0.091 0.909 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.673 12.317 -1.280 37.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.095 6.095 3 C -0.167 4.167 4 H 0.119 0.881 5 C -0.204 4.204 6 C -0.129 4.129 7 C -0.077 4.077 8 N -0.261 5.261 9 C -0.085 4.085 10 C -0.144 4.144 11 C -0.099 4.099 12 C -0.145 4.145 13 C -0.032 4.032 14 N -0.356 5.356 15 C 0.025 3.975 16 C -0.050 4.050 17 C -0.573 4.573 18 H 0.056 0.944 19 C -0.189 4.189 20 N -0.585 5.585 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.169 1.169 25 C 0.301 3.699 26 O -0.456 6.456 27 C -0.060 4.060 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.148 0.852 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.014 0.986 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.109 0.891 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -34.363 11.032 -0.232 36.092 hybrid contribution 0.050 1.128 -0.125 1.136 sum -34.314 12.160 -0.357 36.406 Atomic orbital electron populations 1.23417 0.91763 1.07032 1.05739 1.87423 1.10193 1.13880 1.97992 1.23127 0.99184 0.92071 1.02368 0.88149 1.22057 1.01580 1.01477 0.95301 1.21340 0.91880 1.02307 0.97408 1.22302 0.86556 1.01708 0.97158 1.65371 1.13773 1.11792 1.35118 1.23166 0.95211 0.89054 1.01031 1.22260 0.97931 0.94875 0.99376 1.21423 0.93580 0.96477 0.98403 1.22816 1.02052 0.98304 0.91335 1.22482 0.96533 0.98748 0.85393 1.48785 1.27937 1.50098 1.08821 1.21131 0.82739 0.92284 1.01387 1.19718 0.93221 0.95775 0.96264 1.21283 0.91027 0.94341 1.50604 0.94371 1.25955 0.95357 1.03589 0.94001 1.70048 0.98686 1.37831 1.51914 0.85667 0.78581 0.79527 0.78896 1.20346 1.19980 1.16852 1.21185 0.84348 0.79934 0.84473 1.90662 1.70593 1.63525 1.20859 1.22797 0.92621 0.98261 0.92320 0.89476 0.87814 0.89614 0.92438 0.90327 0.91561 0.92585 0.89300 0.92613 0.91127 0.90277 0.90678 0.93609 0.87470 0.88579 0.85174 0.89559 0.89002 0.89335 0.93632 0.98566 0.95014 0.92274 0.89085 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.45 113.37 1.19 0.18 16 2 S -0.32 -5.21 20.60 -56.49 -1.16 -6.37 16 3 C -0.04 -0.46 2.82 30.59 0.09 -0.37 16 4 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 5 C -0.15 -1.41 9.10 71.98 0.66 -0.75 16 6 C -0.09 -1.38 4.74 30.60 0.14 -1.23 16 7 C 0.05 0.85 4.63 86.30 0.40 1.25 16 8 N -0.54 -11.73 5.37 -882.09 -4.74 -16.47 16 9 C 0.04 0.75 5.76 86.53 0.50 1.25 16 10 C -0.11 -2.30 6.28 31.24 0.20 -2.10 16 11 C -0.09 -2.24 0.83 -52.66 -0.04 -2.29 16 12 C -0.11 -1.69 6.20 31.38 0.19 -1.49 16 13 C 0.09 1.97 7.36 86.89 0.64 2.61 16 14 N -0.62 -21.69 2.94 -818.15 -2.41 -24.10 16 15 C 0.15 6.28 5.89 86.38 0.51 6.79 16 16 C -0.01 -0.57 4.36 29.85 0.13 -0.44 16 17 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 18 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 19 C 0.01 0.52 5.47 84.66 0.46 0.98 16 20 N -0.94 -60.52 13.96 21.45 0.30 -60.22 16 21 Si 0.95 46.07 27.47 68.60 1.88 47.95 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 25 C 0.51 18.94 6.60 87.52 0.58 19.52 16 26 O -0.58 -27.84 17.17 -3.01 -0.05 -27.89 16 27 C 0.07 1.42 5.66 86.06 0.49 1.91 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.60 7.14 -2.39 -0.02 0.59 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.51 6.92 -2.39 -0.02 0.49 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.12 7.27 -2.39 -0.02 1.10 16 36 H 0.06 0.69 7.88 -2.39 -0.02 0.67 16 37 H 0.07 1.41 7.12 -2.39 -0.02 1.39 16 38 H 0.08 1.43 7.79 -2.39 -0.02 1.41 16 39 H 0.08 0.87 7.81 -2.39 -0.02 0.85 16 40 H 0.04 1.35 7.48 -2.39 -0.02 1.33 16 41 H 0.11 1.62 7.43 -2.39 -0.02 1.60 16 42 H 0.10 1.36 7.60 -2.38 -0.02 1.34 16 43 H 0.13 1.01 7.46 -2.39 -0.02 1.00 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 3.42 8.14 -2.39 -0.02 3.41 16 47 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 48 H 0.00 -0.22 7.57 -2.39 -0.02 -0.24 16 49 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 50 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 51 H 0.09 1.23 7.32 -2.39 -0.02 1.21 16 52 H 0.06 1.50 7.84 -2.39 -0.02 1.48 16 Total: -1.00 -82.12 413.43 1.00 -81.12 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.81 Total: 11.99 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 6.37 Total: -6.00 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -6.85 Total: -100.79 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.16 Total: -6.37 kcal Total: -82.12 1.00 -81.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273122285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.999 kcal (2) G-P(sol) polarization free energy of solvation -82.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds