Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81393 * 109.47442 * 2 1 4 4 C 1.81404 * 103.00401 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47431 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47267 * 180.02562 * 5 4 3 7 7 C 1.46857 * 111.00019 * 190.00401 * 6 5 4 8 8 C 1.53140 * 109.44466 * 186.35928 * 7 6 5 9 9 C 1.52547 * 109.31791 * 301.72229 * 8 7 6 10 10 C 1.54133 * 110.08584 * 178.11479 * 9 8 7 11 11 C 1.54584 * 101.65036 * 143.30251 * 10 9 8 12 12 N 1.46818 * 105.49832 * 335.01869 * 11 10 9 13 13 C 1.46496 * 124.36256 * 196.91997 * 12 11 10 14 14 C 1.53006 * 109.46995 * 90.00263 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.34570 * 111.27659 * 17.18938 * 12 11 10 24 24 O 1.21281 * 125.03265 * 179.03554 * 23 12 11 25 25 C 1.52540 * 110.49213 * 56.31192 * 9 8 7 26 26 C 1.46854 * 110.99770 * 314.35932 * 6 5 4 27 27 H 1.09005 * 109.46827 * 60.00197 * 1 2 3 28 28 H 1.09003 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46972 * 300.00473 * 1 2 3 30 30 H 1.08996 * 109.47305 * 239.99165 * 2 1 3 31 31 H 1.09005 * 109.46827 * 119.99803 * 2 1 3 32 32 H 1.09004 * 109.46856 * 59.99831 * 4 3 2 33 33 H 1.08997 * 109.46535 * 300.00331 * 4 3 2 34 34 H 1.09004 * 109.46927 * 60.00255 * 5 4 3 35 35 H 1.09003 * 109.47161 * 300.00455 * 5 4 3 36 36 H 1.08999 * 109.47799 * 66.36900 * 7 6 5 37 37 H 1.08996 * 109.47821 * 306.35208 * 7 6 5 38 38 H 1.09008 * 109.49929 * 181.77347 * 8 7 6 39 39 H 1.09001 * 109.52932 * 61.69839 * 8 7 6 40 40 H 1.09000 * 110.98675 * 25.21101 * 10 9 8 41 41 H 1.09003 * 110.98684 * 261.39381 * 10 9 8 42 42 H 1.09006 * 110.24109 * 216.01015 * 11 10 9 43 43 H 1.09005 * 110.31184 * 94.06339 * 11 10 9 44 44 H 1.09001 * 109.47464 * 330.00524 * 13 12 11 45 45 H 1.09001 * 109.47459 * 210.00239 * 13 12 11 46 46 H 1.09001 * 109.47002 * 299.99701 * 14 13 12 47 47 H 1.08993 * 109.46955 * 60.00138 * 14 13 12 48 48 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 49 49 H 1.09004 * 109.49876 * 63.65683 * 25 9 8 50 50 H 1.08999 * 109.49605 * 183.75038 * 25 9 8 51 51 H 1.09003 * 109.47228 * 293.64181 * 26 6 5 52 52 H 1.09002 * 109.47232 * 53.65345 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.6066 2.8815 0.0002 6 7 6.0662 2.7159 0.0002 7 6 6.7413 3.9983 0.2379 8 6 8.2530 3.8166 0.0737 9 6 8.7425 2.7527 1.0512 10 6 10.2554 2.5218 0.8683 11 6 10.7132 2.2827 2.3253 12 7 9.7197 2.9631 3.1653 13 6 9.9247 3.3068 4.5745 14 6 10.5406 4.7038 4.6744 15 6 10.7521 5.0571 6.1241 16 1 10.4745 4.3556 6.8969 17 6 11.2989 6.2764 6.4638 18 7 11.6364 7.1308 5.5228 19 14 11.5603 6.7146 8.2608 20 1 12.4756 5.7248 8.8836 21 1 12.1582 8.0705 8.3578 22 1 10.2555 6.6966 8.9696 23 6 8.5944 3.2253 2.4755 24 8 7.6083 3.7647 2.9311 25 6 7.9841 1.4459 0.8421 26 6 6.4810 1.7045 0.9809 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2406 0.9540 -0.8890 33 1 4.2398 0.9543 0.8910 34 1 4.3031 3.4335 0.8898 35 1 4.3037 3.4325 -0.8902 36 1 6.5243 4.3413 1.2495 37 1 6.3838 4.7359 -0.4806 38 1 8.7575 4.7605 0.2807 39 1 8.4736 3.5025 -0.9465 40 1 10.7370 3.4045 0.4475 41 1 10.4444 1.6438 0.2505 42 1 11.7014 2.7137 2.4857 43 1 10.7272 1.2155 2.5472 44 1 10.5963 2.5802 5.0318 45 1 8.9669 3.2940 5.0947 46 1 11.4985 4.7167 4.1543 47 1 9.8691 5.4305 4.2172 48 1 12.0208 7.9887 5.7618 49 1 8.1959 1.0577 -0.1542 50 1 8.2987 0.7188 1.5907 51 1 6.2656 2.0642 1.9871 52 1 5.9347 0.7786 0.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274008924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -44.725928 kcal Electronic energy + Delta-G solvation = -28229.014057 eV Core-core repulsion = 24546.865207 eV Total energy + Delta-G solvation = -3682.148849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02682 -38.18591 -36.09051 -34.88246 -33.17074 -33.14505 -31.55451 -30.91318 -29.60588 -28.24557 -25.76371 -24.86251 -24.00410 -23.58666 -22.12276 -21.80428 -20.83984 -20.12811 -18.27035 -16.85024 -16.58982 -16.23312 -15.89057 -15.60780 -15.41384 -15.10618 -14.84881 -14.74393 -14.46608 -14.26916 -14.22394 -13.58125 -13.33948 -13.25804 -13.01262 -12.75169 -12.62197 -12.41359 -12.20920 -12.15274 -12.07001 -11.88914 -11.77800 -11.70049 -11.36328 -11.35206 -11.20041 -11.07323 -10.93166 -10.73211 -10.42832 -10.24678 -10.11953 -9.99167 -9.87645 -9.33219 -9.06745 -8.38643 -8.22063 -8.01282 -7.94815 -6.03682 -4.07392 1.30547 2.29333 3.03438 3.31703 3.36007 3.38124 3.56589 3.91417 4.39431 4.44147 4.49545 4.52247 4.53009 4.58851 4.68579 4.71139 4.97249 4.99186 5.07643 5.19677 5.25161 5.30162 5.31419 5.32307 5.38380 5.39491 5.48663 5.59686 5.65395 5.67956 5.68320 5.72750 5.75663 5.79814 5.86558 5.95642 6.00292 6.06350 6.07415 6.17195 6.32635 6.45410 6.79500 6.96010 7.02071 7.03800 7.51020 7.65590 7.84843 7.95865 8.32149 8.69594 8.99072 9.56649 11.07614 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.002255 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.521124 B =12411.200930 C =13338.938217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 S -0.264 6.264 4 C -0.086 4.086 5 C 0.072 3.928 6 N -0.530 5.530 7 C 0.043 3.957 8 C -0.089 4.089 9 C -0.095 4.095 10 C -0.124 4.124 11 C 0.101 3.899 12 N -0.611 5.611 13 C 0.127 3.873 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.522 3.478 24 O -0.529 6.529 25 C -0.090 4.090 26 C 0.042 3.958 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -16.392 -16.401 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.237 4.237 3 S -0.039 6.039 4 C -0.234 4.234 5 C -0.056 4.056 6 N -0.256 5.256 7 C -0.085 4.085 8 C -0.127 4.127 9 C -0.098 4.098 10 C -0.162 4.162 11 C -0.023 4.023 12 N -0.343 5.343 13 C 0.007 3.993 14 C -0.024 4.024 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.308 3.692 24 O -0.406 6.406 25 C -0.128 4.128 26 C -0.086 4.086 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.417 -15.149 -16.538 26.135 hybrid contribution 0.905 -0.507 1.823 2.097 sum -12.512 -15.656 -14.715 24.863 Atomic orbital electron populations 1.21512 0.92187 1.02510 1.03291 1.23283 1.00227 0.95305 1.04848 1.86948 1.05926 1.12865 1.98133 1.23555 0.92583 1.01908 1.05400 1.21742 0.87480 0.94204 1.02191 1.62124 1.04620 1.09144 1.49696 1.22300 0.93813 0.90090 1.02281 1.21354 0.95166 0.97788 0.98397 1.21069 0.96445 0.97604 0.94710 1.22680 0.93796 1.03320 0.96423 1.22046 0.93671 0.96920 0.89657 1.48590 1.15412 1.57769 1.12546 1.21791 1.01005 0.99574 0.76900 1.19384 0.95882 0.89964 0.97210 1.21045 1.41679 1.01605 0.91885 0.92573 1.25001 0.95451 0.96319 0.97498 1.69957 1.42537 1.08261 1.32357 0.86610 0.78510 0.77503 0.85095 1.20192 1.21236 1.20143 1.20455 0.82797 0.78254 0.87649 1.90629 1.32109 1.43274 1.74577 1.21379 0.93978 0.94895 1.02514 1.22279 0.95685 0.95596 0.95041 0.91657 0.91116 0.91607 0.90144 0.90156 0.89284 0.89720 0.93613 0.89874 0.91263 0.91028 0.90966 0.90524 0.89798 0.89454 0.90181 0.91741 0.91737 0.91248 0.96504 0.96168 0.92863 0.90192 0.91368 0.93230 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.92 37.16 0.37 -0.45 16 2 C -0.09 -0.62 6.66 37.16 0.25 -0.38 16 3 S -0.26 -2.61 21.74 -107.50 -2.34 -4.94 16 4 C -0.09 -0.82 5.18 37.16 0.19 -0.62 16 5 C 0.07 0.81 5.28 -3.83 -0.02 0.79 16 6 N -0.53 -6.29 4.79 -234.52 -1.12 -7.42 16 7 C 0.04 0.57 5.20 -3.77 -0.02 0.55 16 8 C -0.09 -1.12 4.78 -26.89 -0.13 -1.25 16 9 C -0.09 -1.23 0.55 -155.49 -0.09 -1.32 16 10 C -0.12 -1.36 6.21 -25.31 -0.16 -1.52 16 11 C 0.10 1.34 7.35 -3.04 -0.02 1.31 16 12 N -0.61 -10.98 2.94 -172.46 -0.51 -11.48 16 13 C 0.13 2.70 5.88 -4.04 -0.02 2.68 16 14 C 0.01 0.35 5.30 -27.88 -0.15 0.21 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.52 9.41 6.32 -11.03 -0.07 9.34 16 24 O -0.53 -11.47 13.82 5.56 0.08 -11.40 16 25 C -0.09 -0.99 4.76 -26.89 -0.13 -1.11 16 26 C 0.04 0.50 4.64 -3.77 -0.02 0.48 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.08 0.81 6.20 -51.93 -0.32 0.48 16 34 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.17 5.79 -51.93 -0.30 0.87 16 37 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 41 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.56 7.92 -51.93 -0.41 1.15 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.05 0.75 6.65 -51.93 -0.35 0.40 16 52 H 0.07 0.74 5.78 -51.93 -0.30 0.44 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -32.81 410.66 -12.05 -44.87 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.64 Total: -1.37 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.42 Total: -4.89 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.89 Total: -45.22 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.34 Total: -4.94 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.81 -12.05 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274008924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.142 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds