Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81408 * 109.47173 * 2 1 4 4 C 1.81402 * 102.99992 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47028 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47034 * 180.02562 * 5 4 3 7 7 C 1.46795 * 110.99626 * 190.00080 * 6 5 4 8 8 C 1.53271 * 109.44728 * 170.79891 * 7 6 5 9 9 C 1.53214 * 108.62293 * 55.57114 * 8 7 6 10 10 C 1.52738 * 117.84073 * 163.01955 * 9 8 7 11 11 C 1.52759 * 117.78953 * 94.01672 * 9 8 7 12 12 H 1.08998 * 117.50881 * 0.32147 * 11 9 8 13 13 C 1.50703 * 117.50976 * 215.29205 * 11 9 8 14 14 O 1.21281 * 120.00078 * 266.09469 * 13 11 9 15 15 N 1.34774 * 120.00121 * 86.08982 * 13 11 9 16 16 C 1.46497 * 120.00182 * 180.27616 * 15 13 11 17 17 C 1.53005 * 109.47315 * 179.72863 * 16 15 13 18 18 C 1.50698 * 109.47137 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00124 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99721 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00222 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46973 * 119.99763 * 22 20 18 25 25 H 1.48498 * 109.47318 * 239.99956 * 22 20 18 26 26 C 1.53215 * 114.75431 * 308.60867 * 9 8 7 27 27 C 1.46809 * 111.00129 * 65.28373 * 6 5 4 28 28 H 1.08998 * 109.47392 * 59.99273 * 1 2 3 29 29 H 1.08993 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47111 * 299.99846 * 1 2 3 31 31 H 1.09002 * 109.47111 * 240.00154 * 2 1 3 32 32 H 1.08997 * 109.47676 * 120.00265 * 2 1 3 33 33 H 1.09002 * 109.46954 * 59.99799 * 4 3 2 34 34 H 1.09005 * 109.46951 * 300.00179 * 4 3 2 35 35 H 1.08998 * 109.47182 * 59.99881 * 5 4 3 36 36 H 1.09003 * 109.46650 * 299.99735 * 5 4 3 37 37 H 1.08998 * 109.48057 * 50.80419 * 7 6 5 38 38 H 1.08998 * 109.47886 * 290.79313 * 7 6 5 39 39 H 1.08994 * 109.61057 * 295.82928 * 8 7 6 40 40 H 1.08998 * 109.61115 * 175.30860 * 8 7 6 41 41 H 1.08999 * 117.50693 * 144.78571 * 10 9 8 42 42 H 1.09003 * 117.50254 * 359.73509 * 10 9 8 43 43 H 0.97005 * 119.99929 * 0.02562 * 15 13 11 44 44 H 1.09002 * 109.47635 * 299.73114 * 16 15 13 45 45 H 1.09001 * 109.46662 * 59.72834 * 16 15 13 46 46 H 1.09003 * 109.46527 * 300.00027 * 17 16 15 47 47 H 1.08995 * 109.46693 * 59.99989 * 17 16 15 48 48 H 0.97001 * 119.99759 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.61182 * 171.13156 * 26 9 8 50 50 H 1.08996 * 109.61259 * 291.64551 * 26 9 8 51 51 H 1.09001 * 109.47833 * 309.19551 * 27 6 5 52 52 H 1.09003 * 109.47462 * 69.20218 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5059 -0.0008 5 6 4.6065 2.8817 -0.0002 6 7 6.0661 2.7161 -0.0015 7 6 6.7411 3.9977 0.2370 8 6 8.2380 3.7529 0.4572 9 6 8.7909 2.9860 -0.7485 10 6 10.3047 2.9706 -0.9509 11 6 9.4151 3.7967 -1.8829 12 1 9.4394 4.8808 -1.7727 13 6 9.2206 3.2905 -3.2889 14 8 10.0598 2.5785 -3.7986 15 7 8.1142 3.6288 -3.9800 16 6 7.9223 3.1318 -5.3447 17 6 6.5938 3.6541 -5.8957 18 6 6.3962 3.1423 -7.2992 19 1 7.1435 2.5083 -7.7531 20 6 5.2618 3.4842 -8.0044 21 7 4.3520 4.2567 -7.4518 22 14 5.0171 2.8504 -9.7445 23 1 6.1763 2.0067 -10.1315 24 1 3.7737 2.0408 -9.8061 25 1 4.9065 3.9993 -10.6788 26 6 8.0065 1.7236 -1.1205 27 6 6.5234 2.0884 -1.2473 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.2399 0.9544 -0.8910 34 1 4.2406 0.9542 0.8890 35 1 4.3037 3.4327 0.8902 36 1 4.3030 3.4336 -0.8898 37 1 6.3166 4.4730 1.1213 38 1 6.6024 4.6478 -0.6268 39 1 8.3830 3.1643 1.3630 40 1 8.7548 4.7079 0.5517 41 1 10.7494 2.0611 -1.3548 42 1 10.9148 3.5114 -0.2274 43 1 7.4431 4.1986 -3.5725 44 1 8.7395 3.4798 -5.9765 45 1 7.9086 2.0419 -5.3358 46 1 5.7766 3.3060 -5.2639 47 1 6.6075 4.7439 -5.9045 48 1 3.5541 4.4975 -7.9481 49 1 8.3700 1.3339 -2.0714 50 1 8.1330 0.9715 -0.3418 51 1 5.9417 1.1857 -1.4343 52 1 6.3899 2.7846 -2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274009586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -34.422038 kcal Electronic energy + Delta-G solvation = -27955.093314 eV Core-core repulsion = 24273.391275 eV Total energy + Delta-G solvation = -3681.702039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43775 -38.58678 -36.56484 -34.82388 -33.02826 -32.83327 -32.24434 -31.12855 -29.74711 -28.52148 -25.46835 -24.30385 -23.62514 -23.43773 -22.57292 -21.19116 -20.92575 -20.11995 -18.62000 -16.90054 -16.67339 -16.34862 -16.14350 -15.66312 -15.16797 -15.13681 -14.97162 -14.74193 -14.54361 -14.50351 -14.23233 -14.01935 -13.54071 -13.22513 -13.09012 -12.79848 -12.69341 -12.42153 -12.33208 -12.24774 -11.98665 -11.77886 -11.69150 -11.35637 -11.31139 -11.24261 -11.21187 -11.06678 -10.66488 -10.57839 -10.36782 -10.15132 -10.09699 -9.94502 -9.70648 -9.44209 -9.16331 -8.57547 -8.47462 -8.35126 -7.82625 -6.10993 -4.13973 1.41308 2.40386 2.87430 3.26880 3.34494 3.39009 3.51944 3.73538 3.83872 4.39561 4.47121 4.56821 4.64921 4.65605 4.68232 4.71481 4.77644 4.83347 5.07789 5.12037 5.22455 5.26130 5.28154 5.29479 5.32024 5.43753 5.44743 5.46566 5.52464 5.56869 5.63136 5.70100 5.71583 5.78014 5.81296 5.85541 5.95268 6.00472 6.12090 6.18102 6.31881 6.32929 6.70946 6.87028 6.91085 6.92434 7.49351 7.58736 7.87006 8.01070 8.26042 8.65799 8.92173 9.51141 11.00528 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.005846 B = 0.003820 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4788.838073 B = 7327.980304 C =11409.302871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.263 6.263 4 C -0.082 4.082 5 C 0.072 3.928 6 N -0.536 5.536 7 C 0.059 3.941 8 C -0.075 4.075 9 C -0.101 4.101 10 C -0.139 4.139 11 C -0.183 4.183 12 H 0.123 0.877 13 C 0.537 3.463 14 O -0.550 6.550 15 N -0.717 5.717 16 C 0.122 3.878 17 C 0.014 3.986 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.080 4.080 27 C 0.053 3.947 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.395 0.605 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.021 0.979 48 H 0.262 0.738 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -3.636 21.851 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.236 4.236 3 S -0.038 6.038 4 C -0.230 4.230 5 C -0.057 4.057 6 N -0.261 5.261 7 C -0.069 4.069 8 C -0.113 4.113 9 C -0.101 4.101 10 C -0.177 4.177 11 C -0.204 4.204 12 H 0.141 0.859 13 C 0.323 3.677 14 O -0.429 6.429 15 N -0.366 5.366 16 C 0.000 4.000 17 C -0.023 4.023 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.118 4.118 27 C -0.075 4.075 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.229 0.771 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.262 -3.453 21.787 22.060 hybrid contribution -0.049 -0.483 -1.576 1.649 sum -0.311 -3.935 20.211 20.593 Atomic orbital electron populations 1.21512 0.92204 1.02515 1.03298 1.23282 1.00214 0.95172 1.04900 1.86913 1.05700 1.13043 1.98138 1.23381 0.92503 1.01593 1.05536 1.21720 0.87106 0.94578 1.02268 1.61758 1.04114 1.24296 1.35944 1.22075 0.94272 0.89821 1.00779 1.21226 0.94295 0.99360 0.96432 1.21549 0.95060 0.97753 0.95761 1.22984 0.92340 1.02104 1.00236 1.22466 1.08261 0.99483 0.90219 0.85918 1.19559 0.81753 0.80302 0.86134 1.90668 1.43437 1.38167 1.70632 1.46308 1.21550 1.51705 1.17058 1.21722 1.00638 0.98343 0.79336 1.19304 0.89905 0.96814 0.96281 1.21076 1.05180 1.31124 0.98646 0.92249 1.24988 0.95820 0.94977 0.98407 1.69965 1.09760 1.36007 1.37433 0.86480 0.78188 0.78744 0.84313 1.19582 1.20912 1.20903 1.21229 0.93383 0.95252 1.01927 1.22179 0.95695 0.99496 0.90082 0.91483 0.91126 0.91745 0.89988 0.90218 0.89805 0.89382 0.89923 0.93379 0.90552 0.94309 0.90290 0.91090 0.87767 0.88160 0.77112 0.92622 0.92670 0.96083 0.96060 0.92885 0.90938 0.90487 0.90523 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.92 37.16 0.37 -0.66 16 2 C -0.09 -0.75 6.66 37.16 0.25 -0.50 16 3 S -0.26 -2.89 21.74 -107.50 -2.34 -5.23 16 4 C -0.08 -0.82 5.87 37.16 0.22 -0.61 16 5 C 0.07 0.75 4.97 -3.82 -0.02 0.73 16 6 N -0.54 -5.54 4.58 -234.45 -1.07 -6.62 16 7 C 0.06 0.54 5.49 -3.74 -0.02 0.52 16 8 C -0.08 -0.65 5.87 -26.48 -0.16 -0.81 16 9 C -0.10 -1.07 2.02 -154.55 -0.31 -1.38 16 10 C -0.14 -1.54 9.51 -26.84 -0.26 -1.79 16 11 C -0.18 -2.29 5.87 -91.87 -0.54 -2.83 16 12 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 13 C 0.54 9.09 5.85 -10.99 -0.06 9.02 16 14 O -0.55 -11.42 16.56 5.56 0.09 -11.33 16 15 N -0.72 -12.50 5.39 -60.29 -0.32 -12.82 16 16 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 17 C 0.01 0.36 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.08 -0.95 5.52 -26.49 -0.15 -1.09 16 27 C 0.05 0.63 5.35 -3.74 -0.02 0.61 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.90 6.35 -51.92 -0.33 0.57 16 34 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.08 0.80 7.94 -51.93 -0.41 0.38 16 36 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 38 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.10 1.31 7.90 -51.93 -0.41 0.90 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.40 6.21 8.16 -40.82 -0.33 5.88 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.07 1.03 6.85 -51.93 -0.36 0.68 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.08 0.91 6.07 -51.93 -0.32 0.59 16 52 H 0.04 0.61 7.63 -51.93 -0.40 0.22 16 LS Contribution 423.81 15.07 6.39 6.39 Total: -1.00 -31.16 423.81 -12.50 -43.66 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -9.69 Total: 4.10 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.27 Total: -9.19 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.66 Total: -44.76 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.34 Total: -5.23 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -31.16 -12.50 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274009586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.241 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds