Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81405 * 102.99957 * 2 1 4 4 C 1.53008 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.46630 * 54.99730 * 4 3 2 6 6 C 1.52999 * 109.46782 * 295.00017 * 4 3 2 7 7 C 1.50696 * 109.47025 * 175.00117 * 4 3 2 8 8 O 1.21285 * 119.99959 * 95.36319 * 7 4 3 9 9 N 1.34773 * 119.99863 * 275.36890 * 7 4 3 10 10 C 1.46928 * 120.63124 * 355.31356 * 9 7 4 11 11 C 1.53196 * 108.77573 * 126.42026 * 10 9 7 12 12 C 1.53037 * 109.31388 * 54.63137 * 11 10 9 13 13 C 1.53000 * 109.46101 * 178.61422 * 12 11 10 14 14 H 1.09001 * 110.88598 * 59.30618 * 13 12 11 15 15 C 1.55159 * 111.00556 * 183.18327 * 13 12 11 16 16 C 1.54318 * 102.94415 * 153.57848 * 15 13 12 17 17 N 1.47020 * 107.26827 * 337.80817 * 16 15 13 18 18 C 1.36942 * 125.64619 * 178.90326 * 17 16 15 19 19 H 1.07997 * 119.99725 * 175.01180 * 18 17 16 20 20 C 1.38806 * 120.00067 * 355.01011 * 18 17 16 21 21 N 1.31621 * 120.00215 * 5.16509 * 20 18 17 22 22 Si 1.86803 * 120.00153 * 185.16583 * 20 18 17 23 23 H 1.48503 * 109.47245 * 94.99557 * 22 20 18 24 24 H 1.48500 * 109.47161 * 214.99804 * 22 20 18 25 25 H 1.48497 * 109.46887 * 334.99780 * 22 20 18 26 26 C 1.47465 * 108.72782 * 358.97371 * 17 16 15 27 27 C 1.53042 * 109.54352 * 298.64011 * 12 11 10 28 28 C 1.46934 * 120.63169 * 175.34202 * 9 7 4 29 29 H 1.08998 * 109.47210 * 299.99641 * 1 2 3 30 30 H 1.08996 * 109.47427 * 60.00166 * 1 2 3 31 31 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46727 * 60.00169 * 3 2 1 33 33 H 1.09000 * 109.47248 * 300.00118 * 3 2 1 34 34 H 1.09001 * 109.47494 * 305.04492 * 6 4 3 35 35 H 1.08996 * 109.47203 * 65.05029 * 6 4 3 36 36 H 1.09001 * 109.46793 * 185.04897 * 6 4 3 37 37 H 1.08998 * 109.58567 * 6.62922 * 10 9 7 38 38 H 1.09001 * 109.58384 * 246.20250 * 10 9 7 39 39 H 1.09000 * 109.49538 * 294.68569 * 11 10 9 40 40 H 1.08998 * 109.49980 * 174.58783 * 11 10 9 41 41 H 1.09007 * 109.46100 * 58.65885 * 12 11 10 42 42 H 1.09003 * 110.71717 * 271.94447 * 15 13 12 43 43 H 1.09003 * 110.71706 * 35.21071 * 15 13 12 44 44 H 1.08999 * 109.88202 * 97.22348 * 16 15 13 45 45 H 1.08994 * 109.88193 * 218.39234 * 16 15 13 46 46 H 0.96997 * 119.99999 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.34942 * 265.26046 * 26 17 16 48 48 H 1.08997 * 110.41052 * 142.91686 * 26 17 16 49 49 H 1.08997 * 109.50042 * 181.31677 * 27 12 11 50 50 H 1.09001 * 109.49375 * 301.38384 * 27 12 11 51 51 H 1.09001 * 109.58668 * 113.79562 * 28 9 7 52 52 H 1.09002 * 109.58085 * 353.36788 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1693 1.3953 -0.8427 6 6 4.3183 1.3916 1.3064 7 6 4.0819 3.4030 -0.1244 8 8 4.3043 4.0602 0.8703 9 7 4.1382 3.9811 -1.3406 10 6 3.9724 3.1779 -2.5597 11 6 2.8642 3.8016 -3.4141 12 6 3.1916 5.2742 -3.6713 13 6 2.1045 5.8916 -4.5533 14 1 1.1276 5.8174 -4.0753 15 6 2.4420 7.3651 -4.9028 16 6 1.7069 7.5798 -6.2425 17 7 1.4980 6.2541 -6.8430 18 6 0.8600 6.0069 -8.0292 19 1 0.8276 5.0029 -8.4258 20 6 0.2548 7.0466 -8.7217 21 7 0.3805 8.2844 -8.2922 22 14 -0.7379 6.6891 -10.2632 23 1 -2.1742 6.5609 -9.9083 24 1 -0.5648 7.8008 -11.2323 25 1 -0.2639 5.4214 -10.8742 26 6 2.0877 5.2343 -5.9559 27 6 3.2547 6.0249 -2.3391 28 6 4.3672 5.4265 -1.4726 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8031 2.2371 0.8900 33 1 1.8031 2.2372 -0.8900 34 1 3.8259 1.8736 2.1510 35 1 4.1509 0.3156 1.3540 36 1 5.3885 1.5949 1.3454 37 1 3.6964 2.1583 -2.2908 38 1 4.9063 3.1698 -3.1217 39 1 1.9130 3.7271 -2.8871 40 1 2.7964 3.2725 -4.3647 41 1 4.1547 5.3494 -4.1763 42 1 2.0568 8.0406 -4.1389 43 1 3.5170 7.4953 -5.0275 44 1 0.7456 8.0618 -6.0648 45 1 2.3156 8.1950 -6.9049 46 1 -0.0427 9.0109 -8.7759 47 1 3.1022 4.9953 -6.2750 48 1 1.4705 4.3360 -5.9465 49 1 3.4647 7.0782 -2.5246 50 1 2.2996 5.9298 -1.8225 51 1 5.3333 5.6016 -1.9460 52 1 4.3517 5.8904 -0.4863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277273431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -28.530415 kcal Electronic energy + Delta-G solvation = -28459.488317 eV Core-core repulsion = 24778.041757 eV Total energy + Delta-G solvation = -3681.446559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65507 -38.58616 -36.69866 -35.00636 -33.69350 -31.77673 -31.26295 -29.43403 -29.22203 -27.78180 -27.54437 -25.59880 -24.15679 -23.69321 -22.58799 -20.74760 -19.89609 -19.54052 -18.87492 -17.83383 -16.82065 -16.63237 -16.17051 -15.39644 -15.22195 -14.92838 -14.52021 -14.47987 -14.23596 -14.15698 -13.92672 -13.74474 -13.60466 -13.38666 -12.99171 -12.76741 -12.64206 -12.52543 -12.35511 -12.15392 -12.03371 -11.75414 -11.72963 -11.53017 -11.32329 -11.08407 -11.01110 -10.87148 -10.72832 -10.57618 -10.46069 -10.09599 -9.94296 -9.84921 -9.77691 -9.66963 -9.60258 -8.79618 -8.57763 -8.04658 -6.80766 -5.71192 -3.03843 1.19676 2.15400 2.40142 2.78960 3.39281 3.44372 3.46545 4.20774 4.30235 4.36760 4.49556 4.57407 4.77839 4.78661 4.79951 4.80435 4.88023 4.98360 5.05562 5.14053 5.19446 5.32744 5.35985 5.39414 5.48072 5.48508 5.54639 5.62473 5.67001 5.67184 5.69130 5.84120 5.84926 5.92238 5.95012 6.00314 6.14320 6.16425 6.32383 6.40534 6.43821 6.56975 6.60552 6.76899 6.99730 7.17908 7.56840 7.66783 7.84160 7.93570 8.27903 9.23288 9.84202 10.51173 11.40667 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.002491 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.929186 B =11238.250283 C =12662.513576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.250 6.250 3 C -0.078 4.078 4 C -0.095 4.095 5 H 0.102 0.898 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.101 3.899 11 C -0.129 4.129 12 C -0.074 4.074 13 C -0.096 4.096 14 H 0.070 0.930 15 C -0.138 4.138 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.143 3.857 27 C -0.127 4.127 28 C 0.111 3.889 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.251 0.749 47 H 0.016 0.984 48 H 0.035 0.965 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -13.844 18.298 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.024 6.024 3 C -0.226 4.226 4 C -0.117 4.117 5 H 0.120 0.880 6 C -0.192 4.192 7 C 0.309 3.691 8 O -0.416 6.416 9 N -0.340 5.340 10 C -0.022 4.022 11 C -0.167 4.167 12 C -0.093 4.093 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.052 3.948 17 N -0.334 5.334 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.017 3.983 27 C -0.165 4.165 28 C -0.011 4.011 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.911 -14.237 18.645 24.455 hybrid contribution -1.520 0.988 -1.083 2.112 sum 5.390 -13.248 17.561 22.649 Atomic orbital electron populations 1.23421 0.93954 1.06671 1.05244 1.86794 1.07613 1.09960 1.98065 1.23351 0.97710 0.95541 1.06017 1.21114 0.94543 0.93742 1.02345 0.87959 1.21690 1.01127 1.01141 0.95197 1.20444 0.76682 0.89180 0.82805 1.90688 1.49589 1.64853 1.36511 1.48188 1.70990 1.09030 1.05816 1.21943 0.99848 0.94908 0.85465 1.21992 0.97927 0.96686 1.00126 1.21100 0.99574 0.93601 0.94992 1.22346 0.97344 0.96156 0.95679 0.91140 1.22897 0.99916 0.95161 0.99664 1.21135 0.97707 0.87414 0.88585 1.44506 1.66323 1.01219 1.21311 1.19061 1.26339 0.94249 0.95966 0.90539 1.24821 1.00844 0.95411 0.99417 1.69982 1.47916 0.98089 1.40875 0.86133 0.80279 0.77109 0.82479 1.21669 1.21764 1.20641 1.21561 0.95769 0.92507 0.88494 1.21969 0.98647 1.00260 0.95648 1.21675 0.98501 0.79442 1.01500 0.90406 0.90183 0.87918 0.89319 0.89334 0.91449 0.90989 0.92062 0.89571 0.90909 0.91702 0.89938 0.90956 0.92520 0.92661 0.93527 0.94534 0.93819 0.96650 0.94693 0.90229 0.91754 0.91440 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.76 101.05 1.09 0.32 16 2 S -0.25 -2.01 21.28 -107.50 -2.29 -4.30 16 3 C -0.08 -0.63 5.22 37.16 0.19 -0.44 16 4 C -0.10 -0.82 1.89 -91.77 -0.17 -0.99 16 5 H 0.10 0.77 6.29 -51.93 -0.33 0.44 16 6 C -0.13 -1.15 8.37 37.16 0.31 -0.84 16 7 C 0.52 5.87 6.81 -10.99 -0.07 5.79 16 8 O -0.54 -7.89 15.62 5.55 0.09 -7.81 16 9 N -0.61 -6.20 2.97 -172.76 -0.51 -6.72 16 10 C 0.10 0.86 6.24 -3.71 -0.02 0.84 16 11 C -0.13 -1.32 5.21 -26.61 -0.14 -1.46 16 12 C -0.07 -0.89 1.65 -90.58 -0.15 -1.04 16 13 C -0.10 -1.54 2.56 -88.47 -0.23 -1.77 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -2.47 5.42 -24.90 -0.13 -2.61 16 16 C 0.18 4.26 5.38 -3.07 -0.02 4.25 16 17 N -0.61 -15.42 3.40 -170.05 -0.58 -16.00 16 18 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 21 N -0.92 -27.22 10.34 55.49 0.57 -26.64 16 22 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.14 2.82 5.80 -2.51 -0.01 2.80 16 27 C -0.13 -1.40 5.20 -26.61 -0.14 -1.54 16 28 C 0.11 1.17 6.42 -3.71 -0.02 1.15 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.72 8.00 -51.92 -0.42 0.30 16 34 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.61 5.27 -51.93 -0.27 0.34 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.86 7.32 -51.93 -0.38 0.48 16 41 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 42 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.05 1.26 7.25 -51.93 -0.38 0.88 16 45 H 0.04 0.98 7.64 -51.93 -0.40 0.59 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 48 H 0.03 0.67 8.02 -51.93 -0.42 0.26 16 49 H 0.08 0.88 7.32 -51.93 -0.38 0.50 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.09 1.04 7.03 -51.93 -0.37 0.67 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -32.13 406.54 -10.97 -43.09 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -9.58 Total: -2.44 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.23 Total: -2.38 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.52 Total: -49.35 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.29 Total: -4.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.13 -10.97 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277273431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.562 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds