Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.48464 * 110.99905 * 287.66739 * 11 10 9 13 13 C 1.54408 * 103.46702 * 200.47230 * 12 11 10 14 14 C 1.54414 * 103.22086 * 37.09077 * 13 12 11 15 15 H 1.09004 * 112.26825 * 100.69734 * 14 13 12 16 16 C 1.54236 * 109.45983 * 226.07426 * 14 13 12 17 17 N 1.48559 * 104.54660 * 137.05871 * 16 14 13 18 18 C 1.46901 * 110.99535 * 200.45607 * 17 16 14 19 19 C 1.50702 * 109.47227 * 290.12630 * 18 17 16 20 20 N 1.30114 * 124.95260 * 274.69916 * 19 18 17 21 21 C 1.35781 * 109.64626 * 179.88977 * 20 19 18 22 22 C 1.39744 * 133.59746 * 180.12763 * 21 20 19 23 23 C 1.36606 * 119.88118 * 180.29967 * 22 21 20 24 24 C 1.38776 * 120.66970 * 359.96085 * 23 22 21 25 25 C 1.37853 * 120.45428 * 0.02562 * 24 23 22 26 26 C 1.38841 * 119.68674 * 0.02562 * 25 24 23 27 27 N 1.36037 * 124.95232 * 95.00226 * 19 18 17 28 28 H 0.96998 * 126.34598 * 359.93480 * 27 19 18 29 29 C 1.50037 * 104.74041 * 320.42941 * 17 16 14 30 30 C 1.47885 * 111.00010 * 170.00097 * 11 10 9 31 31 H 1.09000 * 111.76132 * 23.05032 * 30 11 10 32 32 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 33 33 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 34 34 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 35 35 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 36 36 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 37 37 H 1.09004 * 110.66574 * 318.48141 * 12 11 10 38 38 H 1.08996 * 110.67193 * 81.62444 * 12 11 10 39 39 H 1.09000 * 109.96118 * 278.93714 * 13 12 11 40 40 H 1.08997 * 111.37859 * 155.91999 * 13 12 11 41 41 H 1.08998 * 110.41854 * 255.82347 * 16 14 13 42 42 H 1.08996 * 110.41804 * 18.29121 * 16 14 13 43 43 H 1.09002 * 109.47352 * 50.12352 * 18 17 16 44 44 H 1.09000 * 109.46923 * 170.12868 * 18 17 16 45 45 H 1.07994 * 120.05877 * 0.27743 * 22 21 20 46 46 H 1.07994 * 119.66053 * 179.97438 * 23 22 21 47 47 H 1.08001 * 119.77164 * 180.02562 * 24 23 22 48 48 H 1.07995 * 120.15802 * 180.02562 * 25 24 23 49 49 H 1.09005 * 110.26925 * 280.05366 * 29 17 16 50 50 H 1.09003 * 111.19210 * 157.23621 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 0.8801 -5.1851 1.3203 13 6 0.6367 -6.7099 1.3187 14 6 1.8784 -7.2650 0.5877 15 1 2.6205 -7.6645 1.2791 16 6 1.4351 -8.3067 -0.4598 17 7 2.2540 -8.0000 -1.6607 18 6 1.6390 -8.5564 -2.8732 19 6 1.7424 -10.0596 -2.8446 20 7 2.7707 -10.7440 -3.2534 21 6 2.5331 -12.0700 -3.0841 22 6 3.2778 -13.2235 -3.3446 23 6 2.7508 -14.4519 -3.0630 24 6 1.4798 -14.5689 -2.5183 25 6 0.7272 -13.4449 -2.2528 26 6 1.2459 -12.1880 -2.5334 27 7 0.7718 -10.8990 -2.3930 28 1 -0.0929 -10.6399 -2.0381 29 6 2.3014 -6.5015 -1.7181 30 6 2.4235 -6.0730 -0.2398 31 1 3.4518 -5.8299 0.0275 32 1 -0.4850 0.8401 0.0004 33 1 0.6241 -2.5567 0.8902 34 1 0.6248 -2.5571 -0.8897 35 1 2.8720 -3.6043 -0.8895 36 1 2.8719 -3.6043 0.8905 37 1 1.5589 -4.9134 2.1287 38 1 -0.0605 -4.6413 1.4069 39 1 -0.2726 -6.9410 0.7638 40 1 0.5783 -7.1040 2.3332 41 1 1.6439 -9.3158 -0.1046 42 1 0.3744 -8.1932 -0.6836 43 1 0.5894 -8.2651 -2.9147 44 1 2.1575 -8.1732 -3.7522 45 1 4.2680 -13.1438 -3.7681 46 1 3.3293 -15.3409 -3.2661 47 1 1.0775 -15.5474 -2.3010 48 1 -0.2613 -13.5415 -1.8285 49 1 1.3806 -6.1109 -2.1515 50 1 3.1653 -6.1560 -2.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277943576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = 84.924921 kcal Electronic energy + Delta-G solvation = -28725.185847 eV Core-core repulsion = 24945.507880 eV Total energy + Delta-G solvation = -3779.677967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38974 -40.02560 -37.74521 -36.39663 -33.68356 -33.39717 -32.20876 -31.05739 -30.23153 -29.48491 -28.75011 -26.82386 -25.96149 -24.07453 -22.75963 -22.39367 -21.68753 -21.50281 -20.72339 -20.00644 -19.48725 -18.07748 -17.48542 -16.57302 -16.38246 -15.84891 -15.62680 -15.05434 -14.82773 -14.60351 -14.53632 -14.36020 -14.18117 -13.98519 -13.89899 -13.39849 -13.02126 -12.51350 -12.34083 -12.13730 -12.08664 -11.90217 -11.88910 -11.78207 -11.52732 -11.45130 -11.03354 -11.00849 -10.87599 -10.84688 -10.61158 -10.60194 -10.52406 -10.16557 -9.85395 -9.40652 -9.14339 -8.72728 -8.60654 -8.38192 -8.35698 -7.93850 -6.01422 -4.03830 0.66445 1.24202 2.45378 2.59158 3.30948 3.37226 3.40330 3.58567 3.75806 3.90073 4.27204 4.35979 4.45130 4.49004 4.68910 4.73553 4.78396 4.79152 4.88148 5.04956 5.16010 5.18371 5.21487 5.29427 5.34209 5.34842 5.42449 5.47119 5.52153 5.58338 5.72572 5.77457 5.85625 5.97306 6.01488 6.04098 6.08146 6.10321 6.22418 6.25187 6.29509 6.38885 6.42183 6.56387 6.61379 6.72860 6.93783 7.03805 7.36384 7.46107 7.68711 7.74061 7.86314 8.05224 8.41376 9.03473 9.60028 11.09842 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.001858 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.410912 B =15068.793213 C =15458.038373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.054 3.946 11 N -0.512 5.512 12 C 0.041 3.959 13 C -0.119 4.119 14 C -0.097 4.097 15 H 0.086 0.914 16 C 0.042 3.958 17 N -0.506 5.506 18 C 0.120 3.880 19 C 0.302 3.698 20 N -0.475 5.475 21 C 0.047 3.953 22 C -0.063 4.063 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.112 4.112 26 C 0.046 3.954 27 N -0.599 5.599 28 H 0.421 0.579 29 C 0.051 3.949 30 C 0.062 3.938 31 H 0.067 0.933 32 H 0.260 0.740 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.121 0.879 49 H 0.067 0.933 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -28.415 -3.293 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.073 4.073 11 N -0.236 5.236 12 C -0.086 4.086 13 C -0.157 4.157 14 C -0.117 4.117 15 H 0.105 0.895 16 C -0.086 4.086 17 N -0.231 5.231 18 C -0.010 4.010 19 C 0.034 3.966 20 N -0.195 5.195 21 C -0.071 4.071 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.064 4.064 27 N -0.210 5.210 28 H 0.259 0.741 29 C -0.076 4.076 30 C -0.048 4.048 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.139 0.861 49 H 0.085 0.915 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.879 -28.159 -4.059 28.464 hybrid contribution -0.939 1.087 1.110 1.816 sum -0.060 -27.072 -2.949 27.232 Atomic orbital electron populations 1.69971 1.06019 1.26552 1.50690 1.24991 0.94828 0.99172 0.95298 0.86602 0.79820 0.83492 0.78127 1.20633 1.21237 1.19930 1.21202 0.92986 0.91087 1.50853 0.92809 1.19020 0.93869 0.90009 0.97699 1.22527 0.96849 0.88805 0.99113 1.64887 1.28246 1.01922 1.28583 1.23080 1.00319 0.94491 0.90748 1.22542 0.97177 0.96007 1.00013 1.22663 0.97644 0.94899 0.96468 0.89535 1.23221 0.95280 0.99105 0.90986 1.65626 1.46148 1.10506 1.00804 1.20700 0.99415 0.84269 0.96600 1.23386 0.84069 0.94259 0.94856 1.70453 1.24407 1.01917 1.22708 1.19159 0.92969 0.91949 1.03031 1.20056 0.99467 0.89483 0.99271 1.20644 0.96117 0.97044 1.01320 1.20873 0.94528 0.97617 0.99422 1.19961 1.00491 0.88920 1.03922 1.18896 0.96558 0.85965 1.04982 1.43135 1.18074 1.04965 1.54850 0.74066 1.23386 1.02448 0.84747 0.96996 1.23094 0.96194 0.91144 0.94330 0.91501 0.93026 0.96662 0.95859 0.92077 0.95863 0.94014 0.89609 0.91090 0.91308 0.90973 0.93458 0.92202 0.86828 0.85345 0.85418 0.85372 0.86072 0.91466 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.80 5.06 -27.88 -0.14 0.66 16 10 C 0.05 1.11 4.67 -3.82 -0.02 1.09 16 11 N -0.51 -8.77 4.70 -221.48 -1.04 -9.81 16 12 C 0.04 0.65 5.87 -2.22 -0.01 0.64 16 13 C -0.12 -1.42 6.59 -25.25 -0.17 -1.59 16 14 C -0.10 -1.17 4.00 -88.17 -0.35 -1.52 16 15 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 16 C 0.04 0.45 5.56 -2.26 -0.01 0.44 16 17 N -0.51 -5.91 5.35 -230.18 -1.23 -7.14 16 18 C 0.12 1.21 5.47 -4.97 -0.03 1.19 16 19 C 0.30 3.39 7.07 -154.82 -1.09 2.29 16 20 N -0.47 -6.47 11.27 -8.23 -0.09 -6.57 16 21 C 0.05 0.59 7.23 -84.70 -0.61 -0.03 16 22 C -0.06 -0.64 10.05 -39.61 -0.40 -1.03 16 23 C -0.13 -1.01 9.96 -39.97 -0.40 -1.41 16 24 C -0.10 -0.76 10.03 -39.52 -0.40 -1.15 16 25 C -0.11 -0.91 10.07 -39.50 -0.40 -1.31 16 26 C 0.05 0.48 7.30 -83.99 -0.61 -0.13 16 27 N -0.60 -5.50 6.23 -8.00 -0.05 -5.55 16 28 H 0.42 2.63 8.96 -40.82 -0.37 2.26 16 29 C 0.05 0.67 6.34 -1.34 -0.01 0.66 16 30 C 0.06 0.88 3.40 -65.38 -0.22 0.66 16 31 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.02 0.41 7.35 -51.93 -0.38 0.03 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 37 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 38 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 39 H 0.07 0.82 7.23 -51.93 -0.38 0.44 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 42 H 0.05 0.47 6.92 -51.93 -0.36 0.11 16 43 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 44 H 0.11 1.12 8.13 -51.93 -0.42 0.70 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 49 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 50 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -32.65 397.57 -14.10 -46.75 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.11 Total: -0.34 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -5.28 Total: -13.95 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.68 Total: -54.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.65 -14.10 -46.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.671 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds