Wall clock time and date at job start Sat Apr 11 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.48464 * 110.99905 * 287.66739 * 11 10 9 13 13 C 1.54408 * 103.46702 * 200.47230 * 12 11 10 14 14 C 1.54414 * 103.22086 * 37.09077 * 13 12 11 15 15 H 1.09004 * 112.26825 * 100.69734 * 14 13 12 16 16 C 1.54236 * 109.45983 * 226.07426 * 14 13 12 17 17 N 1.48559 * 104.54660 * 137.05871 * 16 14 13 18 18 C 1.46901 * 110.99535 * 200.45607 * 17 16 14 19 19 C 1.50702 * 109.47227 * 290.12630 * 18 17 16 20 20 N 1.30114 * 124.95260 * 274.69916 * 19 18 17 21 21 C 1.35781 * 109.64626 * 179.88977 * 20 19 18 22 22 C 1.39744 * 133.59746 * 180.12763 * 21 20 19 23 23 C 1.36606 * 119.88118 * 180.29967 * 22 21 20 24 24 C 1.38776 * 120.66970 * 359.96085 * 23 22 21 25 25 C 1.37853 * 120.45428 * 0.02562 * 24 23 22 26 26 C 1.38841 * 119.68674 * 0.02562 * 25 24 23 27 27 N 1.36037 * 124.95232 * 95.00226 * 19 18 17 28 28 H 0.96998 * 126.34598 * 359.93480 * 27 19 18 29 29 C 1.50037 * 104.74041 * 320.42941 * 17 16 14 30 30 C 1.47885 * 111.00010 * 170.00097 * 11 10 9 31 31 H 1.09000 * 111.76132 * 23.05032 * 30 11 10 32 32 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 33 33 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 34 34 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 35 35 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 36 36 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 37 37 H 1.09004 * 110.66574 * 318.48141 * 12 11 10 38 38 H 1.08996 * 110.67193 * 81.62444 * 12 11 10 39 39 H 1.09000 * 109.96118 * 278.93714 * 13 12 11 40 40 H 1.08997 * 111.37859 * 155.91999 * 13 12 11 41 41 H 1.08998 * 110.41854 * 255.82347 * 16 14 13 42 42 H 1.08996 * 110.41804 * 18.29121 * 16 14 13 43 43 H 1.09002 * 109.47352 * 50.12352 * 18 17 16 44 44 H 1.09000 * 109.46923 * 170.12868 * 18 17 16 45 45 H 1.07994 * 120.05877 * 0.27743 * 22 21 20 46 46 H 1.07994 * 119.66053 * 179.97438 * 23 22 21 47 47 H 1.08001 * 119.77164 * 180.02562 * 24 23 22 48 48 H 1.07995 * 120.15802 * 180.02562 * 25 24 23 49 49 H 1.09005 * 110.26925 * 280.05366 * 29 17 16 50 50 H 1.09003 * 111.19210 * 157.23621 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 0.8801 -5.1851 1.3203 13 6 0.6367 -6.7099 1.3187 14 6 1.8784 -7.2650 0.5877 15 1 2.6205 -7.6645 1.2791 16 6 1.4351 -8.3067 -0.4598 17 7 2.2540 -8.0000 -1.6607 18 6 1.6390 -8.5564 -2.8732 19 6 1.7424 -10.0596 -2.8446 20 7 2.7707 -10.7440 -3.2534 21 6 2.5331 -12.0700 -3.0841 22 6 3.2778 -13.2235 -3.3446 23 6 2.7508 -14.4519 -3.0630 24 6 1.4798 -14.5689 -2.5183 25 6 0.7272 -13.4449 -2.2528 26 6 1.2459 -12.1880 -2.5334 27 7 0.7718 -10.8990 -2.3930 28 1 -0.0929 -10.6399 -2.0381 29 6 2.3014 -6.5015 -1.7181 30 6 2.4235 -6.0730 -0.2398 31 1 3.4518 -5.8299 0.0275 32 1 -0.4850 0.8401 0.0004 33 1 0.6241 -2.5567 0.8902 34 1 0.6248 -2.5571 -0.8897 35 1 2.8720 -3.6043 -0.8895 36 1 2.8719 -3.6043 0.8905 37 1 1.5589 -4.9134 2.1287 38 1 -0.0605 -4.6413 1.4069 39 1 -0.2726 -6.9410 0.7638 40 1 0.5783 -7.1040 2.3332 41 1 1.6439 -9.3158 -0.1046 42 1 0.3744 -8.1932 -0.6836 43 1 0.5894 -8.2651 -2.9147 44 1 2.1575 -8.1732 -3.7522 45 1 4.2680 -13.1438 -3.7681 46 1 3.3293 -15.3409 -3.2661 47 1 1.0775 -15.5474 -2.3010 48 1 -0.2613 -13.5415 -1.8285 49 1 1.3806 -6.1109 -2.1515 50 1 3.1653 -6.1560 -2.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:34 Heat of formation + Delta-G solvation = 63.407079 kcal Electronic energy + Delta-G solvation = -28726.118930 eV Core-core repulsion = 24945.507880 eV Total energy + Delta-G solvation = -3780.611051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.12169 -41.12512 -38.47752 -37.49189 -35.49007 -34.14828 -33.79760 -31.98921 -31.08743 -30.88702 -29.65612 -28.15968 -26.87295 -25.88484 -23.48745 -23.22531 -22.94762 -22.47491 -21.73969 -21.36696 -20.58919 -18.77425 -18.52274 -18.16680 -17.51441 -16.82350 -16.58679 -16.38960 -16.01514 -15.88557 -15.62312 -15.23484 -15.10757 -15.00628 -14.81767 -14.49352 -14.36435 -14.20208 -13.55952 -13.21084 -13.06822 -13.01686 -12.91152 -12.76106 -12.72736 -12.53762 -12.47255 -12.39765 -12.33422 -11.96746 -11.74518 -11.71797 -11.66643 -11.60383 -11.32691 -11.20843 -10.94522 -10.55260 -9.60137 -9.34028 -9.31739 -9.09711 -8.20595 -6.31639 -0.01358 0.58416 1.39750 1.40899 1.51810 1.69347 1.90133 2.39562 2.80330 2.96061 3.08004 3.12878 3.23248 3.42587 3.60318 3.67697 3.80187 4.09083 4.12408 4.18356 4.20918 4.29683 4.34592 4.38484 4.43201 4.47219 4.51106 4.53419 4.55952 4.59318 4.65087 4.69347 4.84835 4.89694 4.93380 4.96499 5.02547 5.08820 5.13182 5.15710 5.26660 5.44058 5.46100 5.57171 5.59901 5.61176 5.65629 5.79138 5.84237 5.99376 6.05836 6.19026 6.31495 6.40686 6.85379 6.92266 7.37418 8.91249 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.001858 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.410912 B =15068.793213 C =15458.038373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.072 3.928 11 N -0.520 5.520 12 C 0.035 3.965 13 C -0.105 4.105 14 C -0.091 4.091 15 H 0.095 0.905 16 C 0.050 3.950 17 N -0.514 5.514 18 C 0.123 3.877 19 C 0.296 3.704 20 N -0.516 5.516 21 C 0.009 3.991 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.100 4.100 25 C -0.116 4.116 26 C 0.035 3.965 27 N -0.587 5.587 28 H 0.434 0.566 29 C 0.059 3.941 30 C 0.058 3.942 31 H 0.060 0.940 32 H 0.263 0.737 33 H -0.009 1.009 34 H -0.008 1.008 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.155 0.845 47 H 0.162 0.838 48 H 0.147 0.853 49 H 0.059 0.941 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -30.586 -2.816 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.004 3.996 10 C -0.056 4.056 11 N -0.245 5.245 12 C -0.092 4.092 13 C -0.143 4.143 14 C -0.111 4.111 15 H 0.113 0.887 16 C -0.078 4.078 17 N -0.239 5.239 18 C -0.006 4.006 19 C 0.028 3.972 20 N -0.237 5.237 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.075 4.075 27 N -0.200 5.200 28 H 0.275 0.725 29 C -0.069 4.069 30 C -0.051 4.051 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.173 0.827 47 H 0.179 0.821 48 H 0.165 0.835 49 H 0.077 0.923 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.716 -30.355 -3.576 30.574 hybrid contribution -0.912 1.648 0.950 2.110 sum -0.196 -28.707 -2.627 28.828 Atomic orbital electron populations 1.70103 1.07731 1.27710 1.51436 1.25935 0.95746 1.03205 0.94662 0.85461 0.78635 0.78514 0.78508 1.19764 1.20682 1.18872 1.21634 0.93468 0.92394 1.50872 0.92360 1.18825 0.94055 0.91745 0.94958 1.22128 0.95427 0.89067 0.98931 1.64794 1.28601 1.01416 1.29664 1.23113 0.99032 0.97296 0.89799 1.22482 0.97420 0.92706 1.01660 1.22657 0.97683 0.94121 0.96618 0.88690 1.23184 0.95812 0.98745 0.90044 1.65588 1.47168 1.09289 1.01829 1.20704 1.00403 0.83788 0.95749 1.23380 0.84255 0.94475 0.95067 1.70364 1.26053 1.03131 1.24192 1.19571 0.94600 0.91984 1.04734 1.20292 0.99839 0.90061 1.00564 1.21021 0.96605 0.96993 0.99821 1.21342 0.93980 0.98859 0.97797 1.20359 1.01686 0.88143 1.03494 1.19190 0.96172 0.86970 1.05190 1.43019 1.18243 1.04409 1.54294 0.72485 1.23231 1.01944 0.85812 0.95914 1.23154 0.95308 0.90856 0.95814 0.92212 0.92788 0.99020 0.98917 0.92055 0.96140 0.94614 0.91650 0.90259 0.88904 0.90455 0.92157 0.90212 0.87126 0.85458 0.82718 0.82051 0.83542 0.92278 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.22 5.06 29.85 0.15 2.37 16 10 C 0.07 3.06 4.67 86.30 0.40 3.46 16 11 N -0.52 -18.10 4.70 -854.64 -4.02 -22.12 16 12 C 0.04 1.12 5.87 86.48 0.51 1.62 16 13 C -0.10 -2.31 6.59 31.55 0.21 -2.10 16 14 C -0.09 -2.03 4.00 -9.21 -0.04 -2.07 16 15 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 16 C 0.05 0.97 5.56 86.40 0.48 1.45 16 17 N -0.51 -11.51 5.35 -882.14 -4.72 -16.23 16 18 C 0.12 2.40 5.47 85.56 0.47 2.87 16 19 C 0.30 6.50 7.07 137.92 0.97 7.47 16 20 N -0.52 -14.31 11.27 -179.96 -2.03 -16.34 16 21 C 0.01 0.22 7.23 39.45 0.29 0.51 16 22 C -0.09 -1.75 10.05 22.25 0.22 -1.53 16 23 C -0.12 -1.66 9.96 22.02 0.22 -1.44 16 24 C -0.10 -1.13 10.03 22.31 0.22 -0.91 16 25 C -0.12 -1.59 10.07 22.32 0.22 -1.36 16 26 C 0.04 0.69 7.30 38.86 0.28 0.97 16 27 N -0.59 -9.99 6.23 -179.22 -1.12 -11.11 16 28 H 0.43 4.54 8.96 -92.71 -0.83 3.71 16 29 C 0.06 1.50 6.34 86.16 0.55 2.04 16 30 C 0.06 1.63 3.40 45.88 0.16 1.78 16 31 H 0.06 1.78 7.83 -2.39 -0.02 1.76 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H -0.01 -0.49 7.35 -2.39 -0.02 -0.51 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 36 H 0.02 0.86 7.84 -2.39 -0.02 0.85 16 37 H 0.04 1.16 7.82 -2.38 -0.02 1.14 16 38 H 0.07 2.30 7.79 -2.39 -0.02 2.28 16 39 H 0.08 1.65 7.23 -2.39 -0.02 1.63 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.06 1.03 6.92 -2.39 -0.02 1.01 16 43 H 0.08 1.22 7.89 -2.39 -0.02 1.20 16 44 H 0.11 2.20 8.13 -2.39 -0.02 2.18 16 45 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 48 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 49 H 0.06 1.61 7.83 -2.38 -0.02 1.59 16 50 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -73.03 397.57 -3.46 -76.49 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.10 Total: 14.55 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 6.01 Total: -15.26 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -11.60 Total: -122.22 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.03 -3.46 -76.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.892 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds