Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47268 * 2 1 4 4 N 1.46901 * 109.46864 * 119.99757 * 2 1 3 5 5 C 1.46897 * 111.00346 * 274.99847 * 4 2 1 6 6 C 1.52995 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.54265 * 110.03473 * 292.17120 * 6 5 4 8 8 C 1.54893 * 104.19509 * 217.10744 * 7 6 5 9 9 C 1.54885 * 102.74893 * 37.93873 * 8 7 6 10 10 C 1.53869 * 110.03432 * 175.00133 * 6 5 4 11 11 C 1.53002 * 109.47295 * 239.99939 * 2 1 3 12 12 H 1.08997 * 110.88279 * 305.47954 * 11 2 1 13 13 C 1.55158 * 111.00384 * 181.59531 * 11 2 1 14 14 C 1.54323 * 102.94103 * 206.42422 * 13 11 2 15 15 N 1.47022 * 107.27118 * 22.19182 * 14 13 11 16 16 C 1.34778 * 125.64677 * 181.02137 * 15 14 13 17 17 O 1.21282 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00055 * 0.02562 * 16 15 14 19 19 S 1.80998 * 109.46881 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00004 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99704 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00431 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46845 * 60.00149 * 24 22 20 26 26 H 1.48498 * 109.47272 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47231 * 300.00150 * 24 22 20 28 28 C 1.47423 * 108.70356 * 1.28870 * 15 14 13 29 29 H 1.08997 * 109.47391 * 295.28845 * 1 2 3 30 30 H 1.09005 * 109.47285 * 55.28709 * 1 2 3 31 31 H 1.09000 * 109.47049 * 175.28559 * 1 2 3 32 32 H 1.00905 * 111.00101 * 38.96096 * 4 2 1 33 33 H 1.09003 * 109.47045 * 300.00661 * 5 4 2 34 34 H 1.08994 * 109.46786 * 60.00005 * 5 4 2 35 35 H 1.09001 * 110.01685 * 53.61325 * 6 5 4 36 36 H 1.09006 * 110.48657 * 335.77968 * 7 6 5 37 37 H 1.09000 * 110.48820 * 98.42539 * 7 6 5 38 38 H 1.09004 * 110.75026 * 279.62411 * 8 7 6 39 39 H 1.09002 * 110.75470 * 156.26029 * 8 7 6 40 40 H 1.09002 * 110.48398 * 203.37565 * 9 8 7 41 41 H 1.08998 * 110.48413 * 80.73813 * 9 8 7 42 42 H 1.09001 * 110.03732 * 238.57031 * 10 6 5 43 43 H 1.09000 * 110.03334 * 0.02562 * 10 6 5 44 44 H 1.09000 * 110.71749 * 88.06464 * 13 11 2 45 45 H 1.09001 * 110.87155 * 324.85899 * 13 11 2 46 46 H 1.09007 * 109.88195 * 262.77666 * 14 13 11 47 47 H 1.09001 * 110.01251 * 141.68682 * 14 13 11 48 48 H 1.08998 * 109.47481 * 300.00299 * 18 16 15 49 49 H 1.09003 * 109.46770 * 60.00368 * 18 16 15 50 50 H 0.96996 * 120.00491 * 179.97438 * 23 22 20 51 51 H 1.09004 * 110.36808 * 94.48022 * 28 15 14 52 52 H 1.08996 * 110.36925 * 216.79841 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.5533 -1.5752 4.0279 8 6 1.6371 -1.5480 5.5743 9 6 1.8515 -0.0446 5.8787 10 6 2.7857 0.4402 4.7509 11 6 2.0400 -0.7213 -1.2492 12 1 1.6123 -1.7211 -1.3225 13 6 3.5905 -0.7770 -1.2651 14 6 3.9176 -0.8685 -2.7705 15 7 2.7593 -0.3349 -3.5021 16 6 2.6440 -0.2592 -4.8428 17 8 1.6384 0.2020 -5.3398 18 6 3.7645 -0.7477 -5.7243 19 16 3.3115 -0.5140 -7.4610 20 6 4.7565 -1.1510 -8.2425 21 1 5.5721 -1.5289 -7.6438 22 6 4.8467 -1.1672 -9.6274 23 7 3.8529 -0.7061 -10.3571 24 14 6.3790 -1.8419 -10.4559 25 1 6.5666 -3.2629 -10.0676 26 1 6.2267 -1.7481 -11.9301 27 1 7.5614 -1.0517 -10.0287 28 6 1.7476 0.1096 -2.5262 29 1 -0.3634 0.4390 0.9291 30 1 -0.3634 0.5852 -0.8448 31 1 -0.3633 -1.0242 -0.0845 32 1 1.4495 -1.4980 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 3.5402 -1.0252 3.3410 36 1 0.5561 -1.2871 3.6949 37 1 1.8123 -2.5638 3.6491 38 1 2.4838 -2.1379 5.9256 39 1 0.7070 -1.9033 6.0179 40 1 2.3280 0.0837 6.8506 41 1 0.9025 0.4906 5.8445 42 1 3.8216 0.4195 5.0895 43 1 2.5114 1.4507 4.4478 44 1 3.9500 -1.6608 -0.7380 45 1 4.0161 0.1283 -0.8323 46 1 4.0862 -1.9083 -3.0508 47 1 4.8040 -0.2756 -2.9963 48 1 4.6711 -0.1836 -5.5057 49 1 3.9407 -1.8065 -5.5345 50 1 3.9159 -0.7171 -11.3250 51 1 1.8592 1.1746 -2.3225 52 1 0.7447 -0.1037 -2.8958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278983181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = -61.208849 kcal Electronic energy + Delta-G solvation = -26939.457540 eV Core-core repulsion = 23256.593937 eV Total energy + Delta-G solvation = -3682.863602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.96952 -39.09392 -37.77097 -35.99466 -32.58789 -32.40136 -30.71326 -29.62445 -29.20986 -28.57511 -27.59053 -25.47725 -24.58132 -23.25984 -22.08614 -21.08325 -20.55077 -19.80596 -19.21967 -17.67764 -16.72805 -16.49160 -16.39618 -15.65206 -15.36334 -15.23677 -14.78621 -14.69196 -14.31542 -14.03445 -13.80747 -13.79278 -13.65035 -13.33517 -13.09091 -12.86134 -12.65789 -12.53716 -12.39763 -12.32713 -11.74992 -11.61288 -11.52661 -11.51918 -11.43099 -11.19868 -11.07768 -11.02906 -11.01823 -10.99233 -10.86713 -10.81376 -10.73902 -10.64695 -9.79476 -9.35663 -9.03312 -8.74033 -8.41729 -8.20435 -6.47174 -6.18780 -3.89362 2.97127 3.12295 3.25462 3.28148 3.31333 3.62966 3.72038 4.14991 4.20317 4.23128 4.30861 4.41162 4.52740 4.63698 4.83821 4.88811 4.95964 4.99258 5.00935 5.07583 5.11610 5.16175 5.17192 5.19256 5.25026 5.25958 5.32933 5.40208 5.41300 5.47037 5.51403 5.54134 5.58792 5.63811 5.66099 5.73021 5.76655 5.81465 5.82239 5.85970 5.87787 5.94907 6.01485 6.05396 6.16611 6.19627 6.51215 6.70051 7.03965 7.61885 7.75810 8.37822 8.62188 9.26202 10.88624 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.001665 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.575988 B =16807.869096 C =17394.276222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.096 3.904 3 H 0.080 0.920 4 N -0.681 5.681 5 C 0.067 3.933 6 C -0.091 4.091 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.089 4.089 12 H 0.083 0.917 13 C -0.106 4.106 14 C 0.097 3.903 15 N -0.626 5.626 16 C 0.548 3.452 17 O -0.519 6.519 18 C -0.146 4.146 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.114 3.886 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.341 0.659 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.269 0.731 51 H 0.063 0.937 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -0.242 33.874 34.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.015 4.015 3 H 0.098 0.902 4 N -0.312 5.312 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.163 4.163 10 C -0.159 4.159 11 C -0.109 4.109 12 H 0.102 0.898 13 C -0.144 4.144 14 C -0.026 4.026 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.393 6.393 18 C -0.296 4.296 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.010 4.010 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.081 0.919 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.174 0.573 32.674 32.945 hybrid contribution 1.226 -0.859 0.255 1.519 sum -2.948 -0.286 32.929 33.062 Atomic orbital electron populations 1.22530 0.96993 1.02572 1.02320 1.21469 0.92570 0.97793 0.89624 0.90170 1.60528 1.57493 1.09737 1.03406 1.22109 0.99175 0.95180 0.89772 1.21803 0.99575 0.95850 0.93755 1.22459 0.98777 0.99176 0.95558 1.22497 1.01479 0.96424 0.95944 1.22361 0.99553 0.96057 0.98353 1.22177 0.99816 0.98965 0.94910 1.22369 0.96403 0.99491 0.92607 0.89819 1.22454 0.94962 1.03289 0.93721 1.22092 0.89210 0.99246 0.92084 1.48491 1.18989 1.63950 1.04861 1.20019 0.88393 0.77816 0.80148 1.90700 1.31150 1.44560 1.72909 1.23501 0.99329 1.03782 1.03038 1.85379 1.25961 1.82369 0.89790 1.22827 1.03688 1.47790 0.94048 0.90986 1.24985 0.97256 0.95061 0.96231 1.70011 1.30888 1.43341 1.06079 0.86227 0.81836 0.79381 0.78070 1.19945 1.20809 1.19942 1.22183 0.93301 0.97841 0.87641 0.92808 0.91488 0.92199 0.84087 0.91096 0.95246 0.90027 0.91963 0.91436 0.91501 0.91800 0.91839 0.91840 0.91703 0.91779 0.89794 0.90826 0.91503 0.91537 0.89347 0.89338 0.92153 0.91906 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 9.00 37.16 0.33 -0.93 16 2 C 0.10 0.68 2.13 -67.71 -0.14 0.54 16 3 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 4 N -0.68 -4.27 5.86 -106.73 -0.63 -4.90 16 5 C 0.07 0.39 4.60 -3.83 -0.02 0.37 16 6 C -0.09 -0.49 3.15 -89.51 -0.28 -0.77 16 7 C -0.12 -0.61 5.56 -25.07 -0.14 -0.75 16 8 C -0.13 -0.61 6.91 -24.74 -0.17 -0.78 16 9 C -0.13 -0.60 6.83 -25.08 -0.17 -0.78 16 10 C -0.12 -0.61 6.46 -25.62 -0.17 -0.77 16 11 C -0.09 -0.79 2.77 -88.35 -0.24 -1.03 16 12 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 13 C -0.11 -0.94 6.04 -24.90 -0.15 -1.09 16 14 C 0.10 1.12 6.48 -3.06 -0.02 1.10 16 15 N -0.63 -9.49 3.32 -170.38 -0.57 -10.05 16 16 C 0.55 11.05 7.87 -10.98 -0.09 10.96 16 17 O -0.52 -12.46 16.12 5.56 0.09 -12.37 16 18 C -0.15 -3.11 5.35 36.01 0.19 -2.92 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.11 1.40 5.78 -2.41 -0.01 1.39 16 29 H 0.05 0.34 7.36 -51.93 -0.38 -0.04 16 30 H 0.07 0.50 7.76 -51.93 -0.40 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.34 2.01 7.72 -39.29 -0.30 1.71 16 33 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.03 0.18 7.23 -51.93 -0.38 -0.20 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.32 7.76 -51.93 -0.40 -0.08 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 49 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 50 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 51 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 52 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 419.28 15.07 6.32 6.32 Total: -1.00 -33.67 419.28 -11.96 -45.63 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -9.79 Total: -2.92 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.88 Total: -8.64 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.46 Total: -40.69 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.67 -11.96 -45.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.582 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds