Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47268 * 2 1 4 4 N 1.46901 * 109.46864 * 119.99757 * 2 1 3 5 5 C 1.46897 * 111.00346 * 274.99847 * 4 2 1 6 6 C 1.52995 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.54265 * 110.03473 * 292.17120 * 6 5 4 8 8 C 1.54893 * 104.19509 * 217.10744 * 7 6 5 9 9 C 1.54885 * 102.74893 * 37.93873 * 8 7 6 10 10 C 1.53869 * 110.03432 * 175.00133 * 6 5 4 11 11 C 1.53002 * 109.47295 * 239.99939 * 2 1 3 12 12 H 1.08997 * 110.88279 * 305.47954 * 11 2 1 13 13 C 1.55158 * 111.00384 * 181.59531 * 11 2 1 14 14 C 1.54323 * 102.94103 * 206.42422 * 13 11 2 15 15 N 1.47022 * 107.27118 * 22.19182 * 14 13 11 16 16 C 1.34778 * 125.64677 * 181.02137 * 15 14 13 17 17 O 1.21282 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00055 * 0.02562 * 16 15 14 19 19 S 1.80998 * 109.46881 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00004 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99704 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00431 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46845 * 60.00149 * 24 22 20 26 26 H 1.48498 * 109.47272 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47231 * 300.00150 * 24 22 20 28 28 C 1.47423 * 108.70356 * 1.28870 * 15 14 13 29 29 H 1.08997 * 109.47391 * 295.28845 * 1 2 3 30 30 H 1.09005 * 109.47285 * 55.28709 * 1 2 3 31 31 H 1.09000 * 109.47049 * 175.28559 * 1 2 3 32 32 H 1.00905 * 111.00101 * 38.96096 * 4 2 1 33 33 H 1.09003 * 109.47045 * 300.00661 * 5 4 2 34 34 H 1.08994 * 109.46786 * 60.00005 * 5 4 2 35 35 H 1.09001 * 110.01685 * 53.61325 * 6 5 4 36 36 H 1.09006 * 110.48657 * 335.77968 * 7 6 5 37 37 H 1.09000 * 110.48820 * 98.42539 * 7 6 5 38 38 H 1.09004 * 110.75026 * 279.62411 * 8 7 6 39 39 H 1.09002 * 110.75470 * 156.26029 * 8 7 6 40 40 H 1.09002 * 110.48398 * 203.37565 * 9 8 7 41 41 H 1.08998 * 110.48413 * 80.73813 * 9 8 7 42 42 H 1.09001 * 110.03732 * 238.57031 * 10 6 5 43 43 H 1.09000 * 110.03334 * 0.02562 * 10 6 5 44 44 H 1.09000 * 110.71749 * 88.06464 * 13 11 2 45 45 H 1.09001 * 110.87155 * 324.85899 * 13 11 2 46 46 H 1.09007 * 109.88195 * 262.77666 * 14 13 11 47 47 H 1.09001 * 110.01251 * 141.68682 * 14 13 11 48 48 H 1.08998 * 109.47481 * 300.00299 * 18 16 15 49 49 H 1.09003 * 109.46770 * 60.00368 * 18 16 15 50 50 H 0.96996 * 120.00491 * 179.97438 * 23 22 20 51 51 H 1.09004 * 110.36808 * 94.48022 * 28 15 14 52 52 H 1.08996 * 110.36925 * 216.79841 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.5533 -1.5752 4.0279 8 6 1.6371 -1.5480 5.5743 9 6 1.8515 -0.0446 5.8787 10 6 2.7857 0.4402 4.7509 11 6 2.0400 -0.7213 -1.2492 12 1 1.6123 -1.7211 -1.3225 13 6 3.5905 -0.7770 -1.2651 14 6 3.9176 -0.8685 -2.7705 15 7 2.7593 -0.3349 -3.5021 16 6 2.6440 -0.2592 -4.8428 17 8 1.6384 0.2020 -5.3398 18 6 3.7645 -0.7477 -5.7243 19 16 3.3115 -0.5140 -7.4610 20 6 4.7565 -1.1510 -8.2425 21 1 5.5721 -1.5289 -7.6438 22 6 4.8467 -1.1672 -9.6274 23 7 3.8529 -0.7061 -10.3571 24 14 6.3790 -1.8419 -10.4559 25 1 6.5666 -3.2629 -10.0676 26 1 6.2267 -1.7481 -11.9301 27 1 7.5614 -1.0517 -10.0287 28 6 1.7476 0.1096 -2.5262 29 1 -0.3634 0.4390 0.9291 30 1 -0.3634 0.5852 -0.8448 31 1 -0.3633 -1.0242 -0.0845 32 1 1.4495 -1.4980 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 3.5402 -1.0252 3.3410 36 1 0.5561 -1.2871 3.6949 37 1 1.8123 -2.5638 3.6491 38 1 2.4838 -2.1379 5.9256 39 1 0.7070 -1.9033 6.0179 40 1 2.3280 0.0837 6.8506 41 1 0.9025 0.4906 5.8445 42 1 3.8216 0.4195 5.0895 43 1 2.5114 1.4507 4.4478 44 1 3.9500 -1.6608 -0.7380 45 1 4.0161 0.1283 -0.8323 46 1 4.0862 -1.9083 -3.0508 47 1 4.8040 -0.2756 -2.9963 48 1 4.6711 -0.1836 -5.5057 49 1 3.9407 -1.8065 -5.5345 50 1 3.9159 -0.7171 -11.3250 51 1 1.8592 1.1746 -2.3225 52 1 0.7447 -0.1037 -2.8958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278983181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = -81.361761 kcal Electronic energy + Delta-G solvation = -26940.331436 eV Core-core repulsion = 23256.593937 eV Total energy + Delta-G solvation = -3683.737498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.12605 -39.71898 -38.79193 -36.84536 -34.59309 -33.43929 -31.68954 -30.81435 -29.70129 -29.29529 -28.42535 -27.66005 -25.32495 -24.10263 -22.84278 -21.53282 -21.17151 -20.68014 -20.28681 -19.55737 -18.06315 -17.44701 -17.17622 -16.88659 -16.57626 -16.22651 -15.92292 -15.73809 -15.57531 -15.29956 -14.80264 -14.51889 -14.41238 -14.18306 -14.06608 -13.87442 -13.69153 -13.59201 -13.39015 -13.17587 -13.12908 -12.99590 -12.86674 -12.63307 -12.22045 -12.11028 -11.92687 -11.86056 -11.77752 -11.76024 -11.64327 -11.54451 -11.46448 -11.29089 -11.21101 -11.13292 -10.98050 -10.30403 -9.69176 -9.26419 -8.69337 -8.34891 -6.14280 1.23438 1.44137 1.44626 1.54510 1.55189 2.09898 2.27094 2.98987 3.07853 3.25056 3.59121 3.69574 3.75970 3.80477 3.83659 3.91668 4.08260 4.18223 4.27355 4.31094 4.36370 4.41115 4.43858 4.46248 4.50884 4.59224 4.61673 4.68129 4.71874 4.79162 4.83248 4.88253 4.91282 4.94195 4.99873 5.03014 5.05450 5.11105 5.18446 5.21125 5.25805 5.28982 5.35718 5.40606 5.42298 5.48017 5.50686 5.60186 6.15760 6.18988 6.39444 6.55370 7.05729 7.10077 8.74244 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.001665 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.575988 B =16807.869096 C =17394.276222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.079 0.921 4 N -0.679 5.679 5 C 0.071 3.929 6 C -0.086 4.086 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.075 4.075 12 H 0.084 0.916 13 C -0.093 4.093 14 C 0.087 3.913 15 N -0.617 5.617 16 C 0.544 3.456 17 O -0.569 6.569 18 C -0.119 4.119 19 S -0.151 6.151 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.262 1.262 28 C 0.108 3.892 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.345 0.655 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.272 0.728 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -1.214 36.138 36.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.006 4.006 3 H 0.098 0.902 4 N -0.310 5.310 5 C -0.058 4.058 6 C -0.105 4.105 7 C -0.158 4.158 8 C -0.164 4.164 9 C -0.164 4.164 10 C -0.159 4.159 11 C -0.095 4.095 12 H 0.103 0.897 13 C -0.131 4.131 14 C -0.035 4.035 15 N -0.351 5.351 16 C 0.332 3.668 17 O -0.448 6.448 18 C -0.270 4.270 19 S 0.076 5.924 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.186 1.186 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.015 4.015 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.327 -0.411 35.014 35.094 hybrid contribution 0.624 -0.541 -0.288 0.875 sum -1.702 -0.952 34.726 34.781 Atomic orbital electron populations 1.22498 0.96776 1.02586 1.02267 1.21320 0.92618 0.97487 0.89204 0.90237 1.60481 1.57441 1.09858 1.03211 1.22071 0.99105 0.94981 0.89628 1.21741 0.99267 0.95860 0.93636 1.22438 0.98595 0.99061 0.95667 1.22509 1.01638 0.96437 0.95853 1.22369 0.99510 0.96024 0.98466 1.22180 0.99923 0.98917 0.94882 1.22276 0.96722 0.98952 0.91546 0.89735 1.22422 0.94487 1.04522 0.91638 1.22438 0.88025 0.99576 0.93501 1.48469 1.20773 1.62228 1.03652 1.19786 0.87373 0.77849 0.81770 1.90677 1.32718 1.47166 1.74286 1.23297 1.00286 1.05137 0.98302 1.85564 1.27804 1.83036 0.95955 1.23166 1.03692 1.47964 0.94789 0.89930 1.26145 1.00990 0.95025 0.96888 1.70180 1.33431 1.44644 1.06475 0.84987 0.77082 0.79057 0.76757 1.18608 1.20271 1.18611 1.22401 0.91849 0.98907 0.88314 0.92060 0.92526 0.92004 0.83598 0.91427 0.95227 0.90705 0.92000 0.91382 0.91518 0.91528 0.91502 0.91888 0.91662 0.91743 0.88080 0.90003 0.90749 0.90764 0.87686 0.87669 0.91940 0.91267 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.00 71.98 0.65 -1.56 16 2 C 0.10 1.26 2.13 44.91 0.10 1.36 16 3 H 0.08 1.03 7.69 -2.39 -0.02 1.01 16 4 N -0.68 -6.85 5.86 -491.59 -2.88 -9.73 16 5 C 0.07 0.68 4.60 86.30 0.40 1.07 16 6 C -0.09 -0.76 3.15 -10.07 -0.03 -0.79 16 7 C -0.12 -0.99 5.56 31.67 0.18 -0.81 16 8 C -0.13 -1.03 6.91 31.89 0.22 -0.81 16 9 C -0.13 -1.02 6.83 31.67 0.22 -0.81 16 10 C -0.12 -1.03 6.46 31.32 0.20 -0.83 16 11 C -0.08 -1.18 2.77 -9.32 -0.03 -1.20 16 12 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 13 C -0.09 -1.35 6.04 31.78 0.19 -1.16 16 14 C 0.09 1.79 6.48 86.73 0.56 2.35 16 15 N -0.62 -18.12 3.32 -811.34 -2.70 -20.82 16 16 C 0.54 22.13 7.87 87.66 0.69 22.82 16 17 O -0.57 -28.37 16.12 -3.04 -0.05 -28.42 16 18 C -0.12 -5.07 5.35 71.24 0.38 -4.68 16 19 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -31.97 9.50 67.95 0.65 -31.32 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.83 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 24 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 C 0.11 2.57 5.78 86.93 0.50 3.07 16 29 H 0.06 0.66 7.36 -2.39 -0.02 0.64 16 30 H 0.06 0.81 7.76 -2.38 -0.02 0.79 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.35 3.19 7.72 -89.69 -0.69 2.50 16 33 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 34 H 0.03 0.29 7.23 -2.39 -0.02 0.28 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.52 7.76 -2.38 -0.02 0.51 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.55 7.67 -2.39 -0.02 0.53 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 46 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 49 H 0.11 4.08 8.14 -2.39 -0.02 4.07 16 50 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 51 H 0.07 1.58 7.96 -2.38 -0.02 1.56 16 52 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -75.06 419.28 1.04 -74.02 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.18 Total: 17.16 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.34 Total: -12.02 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -5.29 Total: -86.93 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -75.06 1.04 -74.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.343 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds