Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 N 1.46903 * 109.47235 * 240.00228 * 2 1 3 5 5 C 1.46895 * 111.00234 * 84.99841 * 4 2 1 6 6 C 1.52992 * 109.47357 * 180.02562 * 5 4 2 7 7 C 1.54270 * 110.03282 * 292.90559 * 6 5 4 8 8 C 1.54958 * 104.16108 * 217.13661 * 7 6 5 9 9 C 1.54888 * 102.78106 * 37.88706 * 8 7 6 10 10 C 1.53880 * 110.03571 * 175.69408 * 6 5 4 11 11 C 1.52995 * 109.47289 * 120.00233 * 2 1 3 12 12 H 1.08996 * 110.89049 * 59.79095 * 11 2 1 13 13 C 1.55159 * 111.00605 * 183.71465 * 11 2 1 14 14 C 1.54336 * 103.02203 * 153.37820 * 13 11 2 15 15 N 1.47019 * 107.26559 * 338.14007 * 14 13 11 16 16 C 1.34784 * 125.64795 * 178.84490 * 15 14 13 17 17 O 1.21280 * 119.99567 * 179.69254 * 16 15 14 18 18 C 1.50694 * 119.99713 * 359.69575 * 16 15 14 19 19 S 1.81004 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00003 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00021 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99977 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00080 * 0.27731 * 22 20 19 24 24 Si 1.86798 * 120.00169 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46796 * 60.00076 * 24 22 20 26 26 H 1.48499 * 109.47308 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47405 * 300.00513 * 24 22 20 28 28 C 1.47420 * 108.70287 * 358.58418 * 15 14 13 29 29 H 1.09000 * 109.47404 * 305.05639 * 1 2 3 30 30 H 1.09006 * 109.47485 * 65.05801 * 1 2 3 31 31 H 1.08998 * 109.47704 * 185.05844 * 1 2 3 32 32 H 1.00902 * 110.99880 * 321.04197 * 4 2 1 33 33 H 1.09006 * 109.47421 * 300.00324 * 5 4 2 34 34 H 1.09006 * 109.47193 * 60.00052 * 5 4 2 35 35 H 1.08995 * 110.01759 * 54.29785 * 6 5 4 36 36 H 1.09001 * 110.48723 * 335.78886 * 7 6 5 37 37 H 1.09003 * 110.48404 * 98.42568 * 7 6 5 38 38 H 1.08998 * 110.72295 * 279.57134 * 8 7 6 39 39 H 1.09001 * 110.92263 * 156.30094 * 8 7 6 40 40 H 1.09000 * 110.48885 * 203.40204 * 9 8 7 41 41 H 1.09009 * 110.59516 * 80.81583 * 9 8 7 42 42 H 1.09005 * 110.02873 * 238.57155 * 10 6 5 43 43 H 1.08997 * 110.02982 * 359.94444 * 10 6 5 44 44 H 1.09002 * 110.71733 * 271.93674 * 13 11 2 45 45 H 1.08998 * 110.72155 * 35.21178 * 13 11 2 46 46 H 1.08994 * 109.99110 * 218.66321 * 14 13 11 47 47 H 1.09004 * 109.77845 * 97.49185 * 14 13 11 48 48 H 1.09002 * 109.47176 * 60.00052 * 18 16 15 49 49 H 1.09000 * 109.47345 * 299.99379 * 18 16 15 50 50 H 0.97004 * 119.99832 * 359.72017 * 23 22 20 51 51 H 1.09012 * 110.36624 * 143.19403 * 28 15 14 52 52 H 1.09003 * 110.36977 * 265.51326 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5744 7 6 4.0674 -0.9433 -3.3657 8 6 4.7101 -0.7746 -4.7656 9 6 4.0192 0.5010 -5.3083 10 6 2.5642 0.3846 -4.8093 11 6 2.0399 -0.7213 1.2492 12 1 1.6864 -1.7520 1.2744 13 6 3.5881 -0.6613 1.3329 14 6 3.8589 -0.7716 2.8483 15 7 2.6315 -0.3555 3.5424 16 6 2.4538 -0.3324 4.8783 17 8 1.3960 0.0363 5.3429 18 6 3.5697 -0.7644 5.7943 19 16 3.0274 -0.6204 7.5152 20 6 4.4821 -1.1733 8.3416 21 1 5.3487 -1.4697 7.7693 22 6 4.5145 -1.2269 9.7282 23 7 3.4569 -0.8699 10.4256 24 14 6.0564 -1.8137 10.6044 25 1 7.1937 -0.9258 10.2529 26 1 5.8358 -1.7772 12.0724 27 1 6.3658 -3.2041 10.1842 28 6 1.6294 0.0382 2.5354 29 1 -0.3634 0.5903 0.8412 30 1 -0.3634 0.4334 -0.9319 31 1 -0.3634 -1.0236 0.0906 32 1 1.4495 -1.4979 -1.4101 33 1 1.0870 0.6164 -2.5526 34 1 2.7588 1.0462 -2.1182 35 1 1.9825 -1.4172 -3.7509 36 1 4.5484 -0.2840 -2.6432 37 1 4.1315 -1.9810 -3.0382 38 1 4.4871 -1.6336 -5.3984 39 1 5.7868 -0.6259 -4.6842 40 1 4.0488 0.5168 -6.3978 41 1 4.4915 1.3954 -4.9017 42 1 1.9373 -0.0547 -5.5853 43 1 2.1832 1.3680 -4.5341 44 1 4.0360 -1.4980 0.7968 45 1 3.9587 0.2883 0.9468 46 1 4.6835 -0.1160 3.1282 47 1 4.0988 -1.8032 3.1060 48 1 4.4393 -0.1273 5.6332 49 1 3.8337 -1.8004 5.5818 50 1 2.6560 -0.5655 9.9706 51 1 0.6321 -0.2660 2.8536 52 1 1.6629 1.1147 2.3675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278983182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -66.214646 kcal Electronic energy + Delta-G solvation = -27061.768894 eV Core-core repulsion = 23378.688224 eV Total energy + Delta-G solvation = -3683.080670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.04377 -39.04841 -37.84771 -36.07408 -32.64861 -32.50875 -30.78006 -29.71404 -29.12695 -28.64279 -27.62493 -24.93271 -24.54035 -23.26769 -22.08224 -21.04467 -20.73926 -19.75637 -19.30678 -18.20219 -16.78225 -16.53414 -16.38223 -15.91523 -15.40455 -15.07867 -14.75927 -14.62984 -14.22271 -14.09126 -13.81698 -13.81296 -13.68424 -13.41265 -13.06341 -12.94188 -12.59167 -12.57105 -12.32935 -12.22313 -11.86657 -11.81048 -11.61957 -11.52853 -11.50387 -11.38437 -11.29589 -11.04807 -10.98848 -10.92175 -10.90528 -10.84607 -10.66146 -10.16077 -9.55669 -9.47739 -8.99670 -8.75442 -8.50731 -8.20092 -6.65318 -6.60431 -3.98043 2.84387 3.00713 3.34669 3.39200 3.48984 3.59348 3.65991 4.21661 4.24313 4.25022 4.28656 4.38464 4.47343 4.60548 4.78954 4.84096 4.95660 4.99102 5.03234 5.06956 5.07478 5.15419 5.19609 5.21874 5.24245 5.27419 5.34697 5.38402 5.40530 5.43416 5.48442 5.51888 5.54513 5.62371 5.64994 5.71300 5.72386 5.73115 5.80545 5.85270 5.89014 5.94293 5.97843 6.05220 6.06256 6.11155 6.42404 6.66300 7.00250 7.65502 7.93761 8.50429 8.51872 9.29051 10.83457 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.001779 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.418349 B =15735.746888 C =16760.329522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.080 0.920 4 N -0.680 5.680 5 C 0.067 3.933 6 C -0.090 4.090 7 C -0.105 4.105 8 C -0.130 4.130 9 C -0.125 4.125 10 C -0.121 4.121 11 C -0.088 4.088 12 H 0.084 0.916 13 C -0.108 4.108 14 C 0.097 3.903 15 N -0.624 5.624 16 C 0.547 3.453 17 O -0.519 6.519 18 C -0.123 4.123 19 S -0.118 6.118 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.084 2.916 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.285 1.285 28 C 0.114 3.886 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.340 0.660 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.278 0.722 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 0.823 -34.196 34.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.013 4.013 3 H 0.098 0.902 4 N -0.310 5.310 5 C -0.062 4.062 6 C -0.109 4.109 7 C -0.142 4.142 8 C -0.168 4.168 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.108 4.108 12 H 0.102 0.898 13 C -0.146 4.146 14 C -0.027 4.027 15 N -0.362 5.362 16 C 0.335 3.665 17 O -0.394 6.394 18 C -0.275 4.275 19 S 0.109 5.891 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.211 1.211 28 C -0.010 4.010 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.614 1.183 -31.736 31.764 hybrid contribution -0.211 -0.104 -2.365 2.377 sum -0.825 1.078 -34.101 34.128 Atomic orbital electron populations 1.22535 0.96987 1.02627 1.02327 1.21454 0.92560 0.97736 0.89594 0.90207 1.60495 1.57427 1.09646 1.03414 1.22126 0.99026 0.95282 0.89800 1.21776 0.97541 0.97989 0.93625 1.22287 0.94018 1.01671 0.96266 1.22563 0.99585 0.97574 0.97056 1.22345 0.95446 0.98324 1.00122 1.22178 0.97115 0.99636 0.96972 1.22313 0.96030 0.99930 0.92500 0.89756 1.22488 0.95294 1.03198 0.93598 1.22107 0.87614 1.00329 0.92627 1.48460 1.15281 1.67581 1.04841 1.19984 0.88987 0.77133 0.80400 1.90700 1.27761 1.46391 1.74530 1.23284 0.99514 1.04229 1.00424 1.84804 1.23441 1.87425 0.93458 1.23698 1.00159 1.55164 0.96463 0.91628 1.26056 1.03579 0.94541 0.93358 1.70796 1.03769 1.38312 1.38932 0.83331 0.73245 0.76234 0.76183 1.21143 1.20274 1.21130 1.22157 0.93279 0.98590 0.86957 0.91521 0.92763 0.92157 0.84151 0.95436 0.90956 0.91329 0.91204 0.91626 0.91842 0.91748 0.92002 0.91707 0.91973 0.91831 0.89628 0.90894 0.91469 0.91435 0.89086 0.89062 0.90997 0.90570 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 8.93 37.15 0.33 -0.91 16 2 C 0.10 0.66 2.09 -67.72 -0.14 0.52 16 3 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 4 N -0.68 -4.04 5.81 -106.73 -0.62 -4.66 16 5 C 0.07 0.37 4.53 -3.83 -0.02 0.36 16 6 C -0.09 -0.48 3.09 -89.50 -0.28 -0.75 16 7 C -0.10 -0.61 6.18 -25.03 -0.15 -0.76 16 8 C -0.13 -0.70 6.91 -24.70 -0.17 -0.87 16 9 C -0.12 -0.64 6.83 -25.08 -0.17 -0.81 16 10 C -0.12 -0.61 6.46 -25.62 -0.17 -0.77 16 11 C -0.09 -0.76 2.77 -88.47 -0.25 -1.00 16 12 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 13 C -0.11 -0.92 6.18 -24.89 -0.15 -1.07 16 14 C 0.10 1.10 6.49 -3.06 -0.02 1.08 16 15 N -0.62 -9.35 3.33 -170.51 -0.57 -9.91 16 16 C 0.55 10.94 7.87 -10.98 -0.09 10.85 16 17 O -0.52 -12.36 16.12 5.56 0.09 -12.27 16 18 C -0.12 -2.63 5.35 36.00 0.19 -2.44 16 19 S -0.12 -3.26 19.60 -107.50 -2.11 -5.36 16 20 C -0.61 -17.79 9.50 30.94 0.29 -17.50 16 21 H 0.07 1.84 7.80 -52.48 -0.41 1.43 16 22 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 23 N -0.88 -27.83 13.67 55.49 0.76 -27.07 16 24 Si 1.08 25.20 29.92 -169.99 -5.09 20.11 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 C 0.11 1.37 5.52 -2.53 -0.01 1.36 16 29 H 0.07 0.50 7.60 -51.93 -0.39 0.10 16 30 H 0.05 0.33 7.35 -51.93 -0.38 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.34 1.90 8.48 -39.29 -0.33 1.56 16 33 H 0.03 0.16 7.36 -51.93 -0.38 -0.23 16 34 H 0.07 0.46 7.94 -51.93 -0.41 0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.46 7.77 -51.93 -0.40 0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.31 7.67 -51.93 -0.40 -0.08 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 49 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 50 H 0.28 8.94 7.13 -40.82 -0.29 8.65 16 51 H 0.08 1.01 8.04 -51.92 -0.42 0.59 16 52 H 0.06 0.73 8.03 -51.93 -0.42 0.32 16 LS Contribution 418.95 15.07 6.31 6.31 Total: -1.00 -34.30 418.95 -11.89 -46.19 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -9.78 Total: -1.54 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.89 Total: -11.79 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.43 Total: -41.65 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.11 Total: -5.36 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.30 -11.89 -46.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.029 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds