Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 N 1.46903 * 109.47235 * 240.00228 * 2 1 3 5 5 C 1.46895 * 111.00234 * 84.99841 * 4 2 1 6 6 C 1.52992 * 109.47357 * 180.02562 * 5 4 2 7 7 C 1.54270 * 110.03282 * 292.90559 * 6 5 4 8 8 C 1.54958 * 104.16108 * 217.13661 * 7 6 5 9 9 C 1.54888 * 102.78106 * 37.88706 * 8 7 6 10 10 C 1.53880 * 110.03571 * 175.69408 * 6 5 4 11 11 C 1.52995 * 109.47289 * 120.00233 * 2 1 3 12 12 H 1.08996 * 110.89049 * 59.79095 * 11 2 1 13 13 C 1.55159 * 111.00605 * 183.71465 * 11 2 1 14 14 C 1.54336 * 103.02203 * 153.37820 * 13 11 2 15 15 N 1.47019 * 107.26559 * 338.14007 * 14 13 11 16 16 C 1.34784 * 125.64795 * 178.84490 * 15 14 13 17 17 O 1.21280 * 119.99567 * 179.69254 * 16 15 14 18 18 C 1.50694 * 119.99713 * 359.69575 * 16 15 14 19 19 S 1.81004 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00003 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00021 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99977 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00080 * 0.27731 * 22 20 19 24 24 Si 1.86798 * 120.00169 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46796 * 60.00076 * 24 22 20 26 26 H 1.48499 * 109.47308 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47405 * 300.00513 * 24 22 20 28 28 C 1.47420 * 108.70287 * 358.58418 * 15 14 13 29 29 H 1.09000 * 109.47404 * 305.05639 * 1 2 3 30 30 H 1.09006 * 109.47485 * 65.05801 * 1 2 3 31 31 H 1.08998 * 109.47704 * 185.05844 * 1 2 3 32 32 H 1.00902 * 110.99880 * 321.04197 * 4 2 1 33 33 H 1.09006 * 109.47421 * 300.00324 * 5 4 2 34 34 H 1.09006 * 109.47193 * 60.00052 * 5 4 2 35 35 H 1.08995 * 110.01759 * 54.29785 * 6 5 4 36 36 H 1.09001 * 110.48723 * 335.78886 * 7 6 5 37 37 H 1.09003 * 110.48404 * 98.42568 * 7 6 5 38 38 H 1.08998 * 110.72295 * 279.57134 * 8 7 6 39 39 H 1.09001 * 110.92263 * 156.30094 * 8 7 6 40 40 H 1.09000 * 110.48885 * 203.40204 * 9 8 7 41 41 H 1.09009 * 110.59516 * 80.81583 * 9 8 7 42 42 H 1.09005 * 110.02873 * 238.57155 * 10 6 5 43 43 H 1.08997 * 110.02982 * 359.94444 * 10 6 5 44 44 H 1.09002 * 110.71733 * 271.93674 * 13 11 2 45 45 H 1.08998 * 110.72155 * 35.21178 * 13 11 2 46 46 H 1.08994 * 109.99110 * 218.66321 * 14 13 11 47 47 H 1.09004 * 109.77845 * 97.49185 * 14 13 11 48 48 H 1.09002 * 109.47176 * 60.00052 * 18 16 15 49 49 H 1.09000 * 109.47345 * 299.99379 * 18 16 15 50 50 H 0.97004 * 119.99832 * 359.72017 * 23 22 20 51 51 H 1.09012 * 110.36624 * 143.19403 * 28 15 14 52 52 H 1.09003 * 110.36977 * 265.51326 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5744 7 6 4.0674 -0.9433 -3.3657 8 6 4.7101 -0.7746 -4.7656 9 6 4.0192 0.5010 -5.3083 10 6 2.5642 0.3846 -4.8093 11 6 2.0399 -0.7213 1.2492 12 1 1.6864 -1.7520 1.2744 13 6 3.5881 -0.6613 1.3329 14 6 3.8589 -0.7716 2.8483 15 7 2.6315 -0.3555 3.5424 16 6 2.4538 -0.3324 4.8783 17 8 1.3960 0.0363 5.3429 18 6 3.5697 -0.7644 5.7943 19 16 3.0274 -0.6204 7.5152 20 6 4.4821 -1.1733 8.3416 21 1 5.3487 -1.4697 7.7693 22 6 4.5145 -1.2269 9.7282 23 7 3.4569 -0.8699 10.4256 24 14 6.0564 -1.8137 10.6044 25 1 7.1937 -0.9258 10.2529 26 1 5.8358 -1.7772 12.0724 27 1 6.3658 -3.2041 10.1842 28 6 1.6294 0.0382 2.5354 29 1 -0.3634 0.5903 0.8412 30 1 -0.3634 0.4334 -0.9319 31 1 -0.3634 -1.0236 0.0906 32 1 1.4495 -1.4979 -1.4101 33 1 1.0870 0.6164 -2.5526 34 1 2.7588 1.0462 -2.1182 35 1 1.9825 -1.4172 -3.7509 36 1 4.5484 -0.2840 -2.6432 37 1 4.1315 -1.9810 -3.0382 38 1 4.4871 -1.6336 -5.3984 39 1 5.7868 -0.6259 -4.6842 40 1 4.0488 0.5168 -6.3978 41 1 4.4915 1.3954 -4.9017 42 1 1.9373 -0.0547 -5.5853 43 1 2.1832 1.3680 -4.5341 44 1 4.0360 -1.4980 0.7968 45 1 3.9587 0.2883 0.9468 46 1 4.6835 -0.1160 3.1282 47 1 4.0988 -1.8032 3.1060 48 1 4.4393 -0.1273 5.6332 49 1 3.8337 -1.8004 5.5818 50 1 2.6560 -0.5655 9.9706 51 1 0.6321 -0.2660 2.8536 52 1 1.6629 1.1147 2.3675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278983182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -86.949934 kcal Electronic energy + Delta-G solvation = -27062.668044 eV Core-core repulsion = 23378.688224 eV Total energy + Delta-G solvation = -3683.979820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.20982 -39.68797 -38.83623 -36.90757 -34.76031 -33.50904 -31.74760 -30.91580 -29.65581 -29.33718 -28.41973 -27.09919 -25.37755 -24.09162 -22.82104 -21.45741 -21.38929 -20.85990 -20.27869 -20.05628 -18.20561 -17.59189 -17.08651 -16.80866 -16.37925 -16.30040 -15.80519 -15.62950 -15.39911 -15.31576 -14.99607 -14.63069 -14.56325 -14.24363 -14.11874 -14.03177 -13.96565 -13.66928 -13.58166 -13.39972 -13.18361 -12.73941 -12.71953 -12.28177 -12.09710 -11.95434 -11.92203 -11.84064 -11.78962 -11.69876 -11.61290 -11.55775 -11.43325 -11.39339 -11.15919 -11.10411 -11.08490 -10.35061 -9.76732 -9.25262 -8.93891 -8.90153 -6.29632 1.13011 1.43722 1.51289 1.60648 1.80955 1.99528 2.33291 3.01331 3.04328 3.09672 3.49075 3.63907 3.76258 3.80228 3.83706 3.90406 4.04773 4.06893 4.24723 4.26756 4.28690 4.32638 4.36497 4.41530 4.51956 4.58350 4.65760 4.67300 4.72805 4.77441 4.83464 4.87118 4.88928 4.95569 4.96824 5.02965 5.04376 5.12851 5.15495 5.21041 5.23803 5.30369 5.32454 5.42816 5.47668 5.53313 5.62673 5.63542 6.13195 6.14172 6.30788 6.54203 6.99479 7.05269 8.49454 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.001779 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.418349 B =15735.746888 C =16760.329522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.080 0.920 4 N -0.677 5.677 5 C 0.072 3.928 6 C -0.086 4.086 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.074 4.074 12 H 0.084 0.916 13 C -0.094 4.094 14 C 0.086 3.914 15 N -0.615 5.615 16 C 0.543 3.457 17 O -0.569 6.569 18 C -0.099 4.099 19 S -0.195 6.195 20 C -0.614 4.614 21 H 0.075 0.925 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 1.137 2.863 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.263 1.263 28 C 0.108 3.892 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.260 0.740 51 H 0.060 0.940 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 0.114 -36.724 36.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.004 4.004 3 H 0.098 0.902 4 N -0.308 5.308 5 C -0.057 4.057 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.168 4.168 9 C -0.163 4.163 10 C -0.159 4.159 11 C -0.094 4.094 12 H 0.103 0.897 13 C -0.132 4.132 14 C -0.036 4.036 15 N -0.349 5.349 16 C 0.331 3.669 17 O -0.449 6.449 18 C -0.251 4.251 19 S 0.032 5.968 20 C -0.762 4.762 21 H 0.093 0.907 22 C -0.222 4.222 23 N -0.547 5.547 24 Si 0.954 3.046 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.125 0.875 49 H 0.125 0.875 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.310 0.469 -34.356 34.384 hybrid contribution -0.825 0.130 -1.760 1.948 sum 0.485 0.599 -36.117 36.125 Atomic orbital electron populations 1.22504 0.96859 1.02563 1.02269 1.21299 0.92518 0.97448 0.89175 0.90225 1.60444 1.57383 1.09756 1.03186 1.22075 0.98993 0.95031 0.89622 1.21733 0.97180 0.98023 0.93568 1.22244 0.94306 1.01207 0.96254 1.22569 0.99613 0.97767 0.96895 1.22355 0.95462 0.98089 1.00410 1.22177 0.97093 0.99662 0.96926 1.22222 0.96230 0.99524 0.91411 0.89718 1.22459 0.94884 1.04438 0.91430 1.22459 0.86138 1.00820 0.94199 1.48448 1.17344 1.65522 1.03609 1.19721 0.87859 0.77285 0.82001 1.90679 1.29279 1.49055 1.75841 1.23147 1.00340 1.05646 0.95941 1.85046 1.24827 1.87770 0.99191 1.24027 1.00421 1.54647 0.97070 0.90667 1.27876 1.05898 0.93659 0.94741 1.70918 1.04179 1.40472 1.39121 0.82718 0.69750 0.77257 0.74830 1.18727 1.20445 1.18726 1.22378 0.91957 0.99519 0.87618 0.92626 0.91979 0.92055 0.83615 0.95266 0.91417 0.91194 0.91923 0.91990 0.91726 0.91770 0.91595 0.91888 0.91667 0.91722 0.87935 0.89981 0.90687 0.90712 0.87475 0.87457 0.92926 0.92174 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.93 71.98 0.64 -1.50 16 2 C 0.11 1.22 2.09 44.91 0.09 1.31 16 3 H 0.08 0.97 7.79 -2.38 -0.02 0.95 16 4 N -0.68 -6.32 5.81 -491.59 -2.86 -9.17 16 5 C 0.07 0.64 4.53 86.30 0.39 1.03 16 6 C -0.09 -0.73 3.09 -10.07 -0.03 -0.76 16 7 C -0.10 -1.00 6.18 31.69 0.20 -0.80 16 8 C -0.13 -1.20 6.91 31.91 0.22 -0.98 16 9 C -0.13 -1.08 6.83 31.67 0.22 -0.86 16 10 C -0.12 -0.99 6.46 31.32 0.20 -0.78 16 11 C -0.07 -1.12 2.77 -9.40 -0.03 -1.14 16 12 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 13 C -0.09 -1.31 6.18 31.79 0.20 -1.11 16 14 C 0.09 1.73 6.49 86.73 0.56 2.29 16 15 N -0.61 -17.73 3.33 -811.76 -2.70 -20.43 16 16 C 0.54 21.82 7.87 87.65 0.69 22.51 16 17 O -0.57 -28.01 16.12 -3.03 -0.05 -28.06 16 18 C -0.10 -4.20 5.35 71.23 0.38 -3.82 16 19 S -0.20 -11.10 19.60 -56.49 -1.11 -12.20 16 20 C -0.61 -36.10 9.50 67.95 0.65 -35.45 16 21 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 22 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 23 N -0.91 -58.68 13.67 21.65 0.30 -58.38 16 24 Si 1.14 49.70 29.92 68.60 2.05 51.75 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 28 C 0.11 2.51 5.52 86.86 0.48 2.98 16 29 H 0.05 0.78 7.60 -2.39 -0.02 0.77 16 30 H 0.06 0.64 7.35 -2.38 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.35 2.92 8.48 -89.69 -0.76 2.16 16 33 H 0.03 0.26 7.36 -2.38 -0.02 0.25 16 34 H 0.07 0.70 7.94 -2.38 -0.02 0.68 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.71 7.77 -2.39 -0.02 0.69 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.06 0.52 7.67 -2.39 -0.02 0.50 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 49 H 0.11 4.16 8.14 -2.39 -0.02 4.15 16 50 H 0.26 17.43 7.13 -92.71 -0.66 16.77 16 51 H 0.06 1.61 8.04 -2.38 -0.02 1.59 16 52 H 0.07 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -76.55 418.95 1.18 -75.37 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.22 Total: 18.86 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.33 Total: -17.72 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -5.26 Total: -87.99 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Atomic # 16 Polarization: -11.10 SS G_CDS: -1.11 Total: -12.20 kcal Total: -76.55 1.18 -75.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.584 kcal (2) G-P(sol) polarization free energy of solvation -76.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds