Wall clock time and date at job start Sat Apr 11 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00143 * 2 1 4 4 C 1.52996 * 109.47237 * 124.99924 * 3 2 1 5 5 N 1.46903 * 109.47307 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99429 * 66.04426 * 5 4 3 7 7 C 1.53003 * 109.47169 * 58.51964 * 6 5 4 8 8 C 1.46895 * 111.00015 * 189.99607 * 5 4 3 9 9 C 1.52999 * 109.46763 * 163.86577 * 8 5 4 10 10 C 1.53348 * 109.42014 * 296.34257 * 9 8 5 11 11 C 1.53197 * 109.14918 * 178.67630 * 10 9 8 12 12 N 1.46924 * 108.89564 * 54.58009 * 11 10 9 13 13 C 1.34771 * 120.63282 * 126.34343 * 12 11 10 14 14 O 1.21287 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00273 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47661 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00372 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99929 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99936 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46957 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47195 * 119.99992 * 21 19 17 24 24 H 1.48494 * 109.47232 * 240.00608 * 21 19 17 25 25 C 1.46930 * 118.73344 * 306.32237 * 12 11 10 26 26 C 1.53043 * 109.45782 * 176.21811 * 9 8 5 27 27 H 1.08001 * 120.00537 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99272 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47107 * 4.99508 * 3 2 1 31 31 H 1.09004 * 109.46701 * 244.99601 * 3 2 1 32 32 H 1.09005 * 109.47020 * 59.99514 * 4 3 2 33 33 H 1.09002 * 109.47317 * 299.99927 * 4 3 2 34 34 H 1.09003 * 109.46500 * 178.51243 * 6 5 4 35 35 H 1.08993 * 109.47422 * 298.51651 * 6 5 4 36 36 H 1.09000 * 109.46832 * 300.00321 * 7 6 5 37 37 H 1.09003 * 109.47283 * 60.00669 * 7 6 5 38 38 H 1.08993 * 109.46893 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46935 * 43.86867 * 8 5 4 40 40 H 1.09001 * 109.47937 * 283.87072 * 8 5 4 41 41 H 1.09000 * 109.46056 * 56.24957 * 9 8 5 42 42 H 1.09000 * 109.68793 * 58.71135 * 10 9 8 43 43 H 1.09001 * 109.47753 * 298.51498 * 10 9 8 44 44 H 1.08999 * 109.58460 * 294.71676 * 11 10 9 45 45 H 1.08999 * 109.58524 * 174.44048 * 11 10 9 46 46 H 1.09003 * 109.46730 * 299.99934 * 15 13 12 47 47 H 1.09003 * 109.47288 * 59.99283 * 15 13 12 48 48 H 0.96995 * 120.00075 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.57901 * 173.39350 * 25 12 11 50 50 H 1.08997 * 109.58789 * 293.67498 * 25 12 11 51 51 H 1.08998 * 109.50026 * 61.43396 * 26 9 8 52 52 H 1.08998 * 109.52331 * 301.35388 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7700 2.6050 1.1813 6 6 2.8678 3.7343 1.4437 7 6 2.1774 3.5324 2.7940 8 6 4.8729 2.5759 2.1511 9 6 5.8445 3.7196 1.8528 10 6 6.4743 3.5063 0.4710 11 6 7.4205 4.6715 0.1647 12 7 8.3921 4.7960 1.2598 13 6 9.7157 4.8017 1.0061 14 8 10.1149 4.7030 -0.1349 15 6 10.6998 4.9294 2.1402 16 16 12.3857 4.9047 1.4821 17 6 13.3011 5.0657 2.9790 18 1 12.7827 5.1427 3.9233 19 6 14.6884 5.0925 2.9447 20 7 15.3202 4.9981 1.7938 21 14 15.6588 5.2625 4.5317 22 1 14.7200 5.3493 5.6790 23 1 16.5401 4.0795 4.7022 24 1 16.4877 6.4933 4.4756 25 6 7.8932 4.9145 2.6367 26 6 6.9422 3.7471 2.9188 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5401 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5064 1.0921 33 1 2.4772 1.2356 2.1130 34 1 3.4419 4.6607 1.4640 35 1 2.1164 3.7896 0.6561 36 1 1.6035 2.6059 2.7737 37 1 2.9288 3.4772 3.5817 38 1 1.5077 4.3700 2.9885 39 1 5.3983 1.6238 2.0754 40 1 4.4739 2.6916 3.1588 41 1 5.3047 4.6665 1.8629 42 1 5.6919 3.4642 -0.2867 43 1 7.0352 2.5717 0.4676 44 1 6.8473 5.5946 0.0781 45 1 7.9465 4.4790 -0.7703 46 1 10.5284 5.8688 2.6659 47 1 10.5677 4.0970 2.8315 48 1 16.2896 5.0172 1.7697 49 1 8.7310 4.8798 3.3331 50 1 7.3608 5.8585 2.7524 51 1 7.4985 2.8101 2.8925 52 1 6.4912 3.8749 3.9029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281824254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:29 Heat of formation + Delta-G solvation = -23.270548 kcal Electronic energy + Delta-G solvation = -27358.108392 eV Core-core repulsion = 23676.889917 eV Total energy + Delta-G solvation = -3681.218474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.07094 -39.00245 -37.05763 -35.23357 -33.25657 -32.41287 -31.43847 -30.83284 -29.60032 -28.56653 -26.36017 -25.46334 -24.56031 -23.25042 -22.97614 -20.92652 -20.14087 -19.89263 -18.95030 -17.66088 -16.63412 -16.51721 -16.23679 -15.65311 -15.49282 -15.19309 -14.85069 -14.79245 -14.25569 -14.16328 -13.89613 -13.82435 -13.53371 -13.30296 -13.19210 -12.93861 -12.83149 -12.64328 -12.47141 -12.26542 -12.08404 -11.90528 -11.71588 -11.55467 -11.41105 -11.27281 -11.06538 -11.04766 -10.99413 -10.77258 -10.73031 -10.59259 -10.40125 -9.77060 -9.75201 -9.26948 -9.05937 -8.58747 -8.41740 -8.18959 -6.47615 -6.20069 -3.90225 1.85778 3.01048 3.12774 3.22319 3.27927 3.32363 3.52508 3.65548 4.21763 4.39595 4.47757 4.60812 4.62095 4.76291 4.79488 4.80835 4.84417 4.94062 4.96209 5.06571 5.09972 5.15040 5.20586 5.22186 5.25364 5.31081 5.34087 5.40987 5.47765 5.53721 5.58038 5.62335 5.62832 5.71060 5.72048 5.76754 5.81498 5.89603 5.91820 5.94298 6.08365 6.11109 6.15333 6.21229 6.31075 6.34971 6.74399 6.75719 6.78220 7.61126 7.65904 8.36957 8.64382 9.25261 10.87431 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.001835 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.171783 B =15256.935124 C =15529.314616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.091 4.091 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.045 3.955 7 C -0.195 4.195 8 C 0.056 3.944 9 C -0.080 4.080 10 C -0.117 4.117 11 C 0.111 3.889 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.110 3.890 26 C -0.131 4.131 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.023 -5.661 1.920 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.129 4.129 4 C -0.073 4.073 5 N -0.255 5.255 6 C -0.083 4.083 7 C -0.253 4.253 8 C -0.072 4.072 9 C -0.099 4.099 10 C -0.155 4.155 11 C -0.011 4.011 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.013 4.013 26 C -0.170 4.170 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.034 -5.744 -0.346 30.581 hybrid contribution -0.292 0.047 3.301 3.314 sum -30.326 -5.697 2.955 30.998 Atomic orbital electron populations 1.23849 0.95984 1.01768 1.01782 1.22959 0.96009 0.98618 0.99345 1.20758 0.97774 0.94951 0.99388 1.22108 0.96074 0.91877 0.97225 1.62188 1.10489 1.02880 1.49975 1.22219 0.95597 0.94702 0.95776 1.22429 1.01313 1.02245 0.99355 1.22224 0.91886 0.99613 0.93468 1.21172 0.94891 0.98319 0.95471 1.21900 0.98375 0.98353 0.96912 1.21550 0.90376 0.97848 0.91374 1.48107 1.05488 1.74675 1.07286 1.20307 0.81895 0.75185 0.90402 1.90685 1.77829 1.48059 1.22774 1.23548 1.02072 1.04510 0.99927 1.85408 0.90020 1.95880 1.12228 1.22905 0.93699 1.58146 0.93504 0.90928 1.24989 0.96710 0.94619 0.97273 1.70029 1.08903 1.46838 1.24490 0.86124 0.79542 0.77936 0.81933 1.19638 1.20586 1.20571 1.21657 0.98340 0.97856 0.83473 1.21955 0.96872 0.99592 0.98531 0.88595 0.88720 0.87385 0.91520 0.90029 0.90799 0.94270 0.90419 0.90653 0.92364 0.92340 0.92138 0.90887 0.94203 0.91079 0.89730 0.91926 0.92254 0.89117 0.89383 0.89367 0.92259 0.89323 0.91712 0.91199 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.02 0.42 -0.68 16 2 C -0.15 -0.90 9.52 -36.03 -0.34 -1.24 16 3 C -0.09 -0.56 5.58 -27.89 -0.16 -0.71 16 4 C 0.05 0.36 4.66 -3.82 -0.02 0.34 16 5 N -0.53 -3.74 4.05 -234.62 -0.95 -4.69 16 6 C 0.04 0.28 5.68 -3.82 -0.02 0.26 16 7 C -0.19 -1.12 9.26 37.16 0.34 -0.78 16 8 C 0.06 0.41 4.26 -3.83 -0.02 0.40 16 9 C -0.08 -0.66 2.16 -90.42 -0.20 -0.85 16 10 C -0.12 -1.19 5.28 -26.45 -0.14 -1.33 16 11 C 0.11 1.40 6.42 -3.71 -0.02 1.38 16 12 N -0.62 -9.03 2.97 -172.77 -0.51 -9.54 16 13 C 0.53 10.46 7.72 -10.99 -0.08 10.38 16 14 O -0.52 -12.21 15.27 5.55 0.08 -12.12 16 15 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 26 C -0.13 -1.17 5.36 -26.61 -0.14 -1.31 16 27 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 28 H 0.09 0.49 7.84 -52.48 -0.41 0.08 16 29 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.07 0.40 6.24 -51.93 -0.32 0.07 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.50 7.86 -51.93 -0.41 0.09 16 33 H 0.04 0.26 5.96 -51.93 -0.31 -0.05 16 34 H 0.08 0.51 6.47 -51.93 -0.34 0.17 16 35 H 0.08 0.45 6.54 -51.93 -0.34 0.11 16 36 H 0.06 0.35 6.25 -51.93 -0.32 0.02 16 37 H 0.06 0.36 6.31 -51.93 -0.33 0.04 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 40 H 0.04 0.28 5.99 -51.93 -0.31 -0.03 16 41 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 42 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 46 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 47 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 412.31 15.07 6.21 6.21 Total: -1.00 -33.47 412.31 -10.78 -44.25 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -9.07 Total: -2.14 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.04 Total: -8.92 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.73 Total: -39.81 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.47 -10.78 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281824254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.977 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds