Wall clock time and date at job start Sat Apr 11 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00143 * 2 1 4 4 C 1.52996 * 109.47237 * 124.99924 * 3 2 1 5 5 N 1.46903 * 109.47307 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99429 * 66.04426 * 5 4 3 7 7 C 1.53003 * 109.47169 * 58.51964 * 6 5 4 8 8 C 1.46895 * 111.00015 * 189.99607 * 5 4 3 9 9 C 1.52999 * 109.46763 * 163.86577 * 8 5 4 10 10 C 1.53348 * 109.42014 * 296.34257 * 9 8 5 11 11 C 1.53197 * 109.14918 * 178.67630 * 10 9 8 12 12 N 1.46924 * 108.89564 * 54.58009 * 11 10 9 13 13 C 1.34771 * 120.63282 * 126.34343 * 12 11 10 14 14 O 1.21287 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00273 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47661 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00372 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99929 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99936 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46957 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47195 * 119.99992 * 21 19 17 24 24 H 1.48494 * 109.47232 * 240.00608 * 21 19 17 25 25 C 1.46930 * 118.73344 * 306.32237 * 12 11 10 26 26 C 1.53043 * 109.45782 * 176.21811 * 9 8 5 27 27 H 1.08001 * 120.00537 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99272 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47107 * 4.99508 * 3 2 1 31 31 H 1.09004 * 109.46701 * 244.99601 * 3 2 1 32 32 H 1.09005 * 109.47020 * 59.99514 * 4 3 2 33 33 H 1.09002 * 109.47317 * 299.99927 * 4 3 2 34 34 H 1.09003 * 109.46500 * 178.51243 * 6 5 4 35 35 H 1.08993 * 109.47422 * 298.51651 * 6 5 4 36 36 H 1.09000 * 109.46832 * 300.00321 * 7 6 5 37 37 H 1.09003 * 109.47283 * 60.00669 * 7 6 5 38 38 H 1.08993 * 109.46893 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46935 * 43.86867 * 8 5 4 40 40 H 1.09001 * 109.47937 * 283.87072 * 8 5 4 41 41 H 1.09000 * 109.46056 * 56.24957 * 9 8 5 42 42 H 1.09000 * 109.68793 * 58.71135 * 10 9 8 43 43 H 1.09001 * 109.47753 * 298.51498 * 10 9 8 44 44 H 1.08999 * 109.58460 * 294.71676 * 11 10 9 45 45 H 1.08999 * 109.58524 * 174.44048 * 11 10 9 46 46 H 1.09003 * 109.46730 * 299.99934 * 15 13 12 47 47 H 1.09003 * 109.47288 * 59.99283 * 15 13 12 48 48 H 0.96995 * 120.00075 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.57901 * 173.39350 * 25 12 11 50 50 H 1.08997 * 109.58789 * 293.67498 * 25 12 11 51 51 H 1.08998 * 109.50026 * 61.43396 * 26 9 8 52 52 H 1.08998 * 109.52331 * 301.35388 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7700 2.6050 1.1813 6 6 2.8678 3.7343 1.4437 7 6 2.1774 3.5324 2.7940 8 6 4.8729 2.5759 2.1511 9 6 5.8445 3.7196 1.8528 10 6 6.4743 3.5063 0.4710 11 6 7.4205 4.6715 0.1647 12 7 8.3921 4.7960 1.2598 13 6 9.7157 4.8017 1.0061 14 8 10.1149 4.7030 -0.1349 15 6 10.6998 4.9294 2.1402 16 16 12.3857 4.9047 1.4821 17 6 13.3011 5.0657 2.9790 18 1 12.7827 5.1427 3.9233 19 6 14.6884 5.0925 2.9447 20 7 15.3202 4.9981 1.7938 21 14 15.6588 5.2625 4.5317 22 1 14.7200 5.3493 5.6790 23 1 16.5401 4.0795 4.7022 24 1 16.4877 6.4933 4.4756 25 6 7.8932 4.9145 2.6367 26 6 6.9422 3.7471 2.9188 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5401 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5064 1.0921 33 1 2.4772 1.2356 2.1130 34 1 3.4419 4.6607 1.4640 35 1 2.1164 3.7896 0.6561 36 1 1.6035 2.6059 2.7737 37 1 2.9288 3.4772 3.5817 38 1 1.5077 4.3700 2.9885 39 1 5.3983 1.6238 2.0754 40 1 4.4739 2.6916 3.1588 41 1 5.3047 4.6665 1.8629 42 1 5.6919 3.4642 -0.2867 43 1 7.0352 2.5717 0.4676 44 1 6.8473 5.5946 0.0781 45 1 7.9465 4.4790 -0.7703 46 1 10.5284 5.8688 2.6659 47 1 10.5677 4.0970 2.8315 48 1 16.2896 5.0172 1.7697 49 1 8.7310 4.8798 3.3331 50 1 7.3608 5.8585 2.7524 51 1 7.4985 2.8101 2.8925 52 1 6.4912 3.8749 3.9029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281824254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:28 Heat of formation + Delta-G solvation = -42.847048 kcal Electronic energy + Delta-G solvation = -27358.957292 eV Core-core repulsion = 23676.889917 eV Total energy + Delta-G solvation = -3682.067375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.20339 -39.81546 -38.12702 -35.81547 -34.58743 -34.23807 -32.46466 -31.32012 -30.68675 -29.57818 -27.69609 -27.08265 -25.10158 -24.12320 -23.86371 -21.79601 -20.68568 -20.51650 -20.19951 -19.47055 -18.10141 -17.08408 -16.92924 -16.87513 -16.79586 -16.50701 -16.11836 -15.81972 -15.51123 -15.04124 -14.88730 -14.61876 -14.48820 -14.41608 -14.17416 -13.94916 -13.84640 -13.47214 -13.43946 -13.18668 -13.15437 -12.94059 -12.91239 -12.68364 -12.58190 -12.34081 -12.16198 -12.06637 -11.95699 -11.69301 -11.62456 -11.50213 -11.38358 -11.15805 -11.09792 -10.80409 -10.25378 -10.20434 -9.63603 -9.10762 -8.67460 -8.34483 -6.13055 1.26354 1.41631 1.41692 1.46591 1.57830 1.59476 2.14862 2.27604 2.98824 2.99689 3.26394 3.67491 3.77678 3.89551 3.96256 4.01361 4.15855 4.21959 4.25488 4.31950 4.33529 4.36502 4.38359 4.43004 4.46189 4.52821 4.55507 4.60956 4.67327 4.72778 4.76823 4.83326 4.89141 4.97169 5.03003 5.05641 5.09999 5.14982 5.15973 5.17677 5.24980 5.27521 5.41998 5.43456 5.53676 5.67194 5.77657 5.90405 6.20142 6.21785 6.24620 6.33658 7.06630 7.17220 8.75133 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.001835 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.171783 B =15256.935124 C =15529.314616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.085 4.085 4 C 0.059 3.941 5 N -0.540 5.540 6 C 0.045 3.955 7 C -0.189 4.189 8 C 0.061 3.939 9 C -0.072 4.072 10 C -0.105 4.105 11 C 0.109 3.891 12 N -0.605 5.605 13 C 0.530 3.470 14 O -0.571 6.571 15 C -0.122 4.122 16 S -0.155 6.155 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.101 3.899 26 C -0.124 4.124 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.271 0.729 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.056 0.944 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.318 -5.274 4.586 34.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.180 4.180 3 C -0.123 4.123 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.082 4.082 7 C -0.248 4.248 8 C -0.067 4.067 9 C -0.090 4.090 10 C -0.143 4.143 11 C -0.013 4.013 12 N -0.340 5.340 13 C 0.318 3.682 14 O -0.450 6.450 15 C -0.273 4.273 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.021 4.021 26 C -0.163 4.163 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.109 0.891 51 H 0.075 0.925 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -32.398 -5.359 2.348 32.922 hybrid contribution 0.242 -0.079 2.435 2.448 sum -32.156 -5.438 4.783 32.961 Atomic orbital electron populations 1.23993 0.95944 1.02387 1.01004 1.23015 0.96271 0.98648 1.00045 1.20684 0.97609 0.95197 0.98768 1.22065 0.95925 0.91513 0.97408 1.62174 1.10795 1.03350 1.50023 1.22236 0.95530 0.94284 0.96174 1.22371 1.01228 1.02336 0.98860 1.22121 0.91750 0.98728 0.94059 1.21112 0.94817 0.99354 0.93757 1.21789 0.97659 0.96177 0.98691 1.21714 0.90022 0.99985 0.89628 1.48145 1.03929 1.72285 1.09596 1.20154 0.83472 0.75414 0.89189 1.90667 1.79025 1.50949 1.24336 1.23358 0.97495 1.06153 1.00292 1.85612 0.96014 1.96233 1.14873 1.23229 0.94333 1.58197 0.93503 0.89867 1.26142 0.97895 0.93802 1.01320 1.70195 1.09374 1.47926 1.27323 0.84890 0.77802 0.78063 0.77095 1.17913 1.19945 1.19903 1.22015 0.98974 1.00167 0.80957 1.21923 0.96379 0.97882 1.00114 0.87848 0.88308 0.87198 0.91260 0.90944 0.91351 0.94110 0.90287 0.90459 0.92706 0.92535 0.91524 0.91693 0.93214 0.89813 0.88920 0.93787 0.90009 0.91981 0.87487 0.87615 0.91998 0.89560 0.89138 0.92488 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.16 -1.75 9.52 25.65 0.24 -1.51 16 3 C -0.09 -0.95 5.58 29.85 0.17 -0.78 16 4 C 0.06 0.68 4.66 86.30 0.40 1.08 16 5 N -0.54 -6.53 4.05 -896.22 -3.63 -10.16 16 6 C 0.05 0.45 5.68 86.30 0.49 0.94 16 7 C -0.19 -1.69 9.26 71.98 0.67 -1.03 16 8 C 0.06 0.76 4.26 86.30 0.37 1.13 16 9 C -0.07 -0.99 2.16 -10.66 -0.02 -1.01 16 10 C -0.10 -1.99 5.28 30.78 0.16 -1.83 16 11 C 0.11 2.65 6.42 86.36 0.55 3.21 16 12 N -0.61 -17.00 2.97 -818.90 -2.43 -19.44 16 13 C 0.53 20.96 7.72 87.66 0.68 21.64 16 14 O -0.57 -28.02 15.27 -3.05 -0.05 -28.07 16 15 C -0.12 -5.03 4.50 71.23 0.32 -4.71 16 16 S -0.15 -8.80 20.57 -56.49 -1.16 -9.96 16 17 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 21 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.10 1.94 6.34 86.36 0.55 2.49 16 26 C -0.12 -1.84 5.36 30.67 0.16 -1.68 16 27 H 0.10 0.84 8.06 -2.91 -0.02 0.82 16 28 H 0.10 0.87 7.84 -2.91 -0.02 0.85 16 29 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.07 0.73 6.24 -2.39 -0.01 0.71 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.87 7.86 -2.38 -0.02 0.85 16 33 H 0.04 0.47 5.96 -2.39 -0.01 0.45 16 34 H 0.08 0.78 6.47 -2.39 -0.02 0.77 16 35 H 0.08 0.75 6.54 -2.39 -0.02 0.74 16 36 H 0.05 0.53 6.25 -2.39 -0.01 0.52 16 37 H 0.06 0.53 6.31 -2.39 -0.02 0.52 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.93 7.81 -2.38 -0.02 0.91 16 40 H 0.05 0.55 5.99 -2.39 -0.01 0.53 16 41 H 0.08 1.02 6.55 -2.39 -0.02 1.01 16 42 H 0.09 1.65 7.69 -2.39 -0.02 1.63 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.90 7.00 -2.39 -0.02 1.89 16 46 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 47 H 0.11 3.96 7.69 -2.39 -0.02 3.95 16 48 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.09 1.73 5.93 -2.39 -0.01 1.72 16 50 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -75.45 412.31 2.74 -72.71 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.88 Total: 17.96 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 6.82 Total: -12.59 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -5.78 Total: -85.85 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -75.45 2.74 -72.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281824254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.861 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds