Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99764 * 2 1 4 4 C 1.53004 * 109.46789 * 125.00113 * 3 2 1 5 5 C 1.53002 * 109.46644 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46941 * 55.00205 * 5 4 3 7 7 C 1.52998 * 109.46780 * 175.00111 * 5 4 3 8 8 N 1.46898 * 109.47155 * 294.99966 * 5 4 3 9 9 C 1.46903 * 110.99585 * 155.00184 * 8 5 4 10 10 C 1.52996 * 109.46971 * 179.97438 * 9 8 5 11 11 H 1.08998 * 109.49973 * 54.93400 * 10 9 8 12 12 C 1.53042 * 109.50066 * 174.99852 * 10 9 8 13 13 C 1.53039 * 109.54198 * 181.31673 * 12 10 9 14 14 C 1.53196 * 109.33748 * 298.62051 * 13 12 10 15 15 N 1.46992 * 108.73878 * 54.61838 * 14 13 12 16 16 C 1.34784 * 120.60795 * 126.38575 * 15 14 13 17 17 O 1.21283 * 119.99359 * 180.02562 * 16 15 14 18 18 C 1.50691 * 120.00259 * 0.02599 * 16 15 14 19 19 S 1.81005 * 109.47111 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00250 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00267 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99787 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00113 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47390 * 59.99695 * 24 22 20 26 26 H 1.48503 * 109.46918 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47222 * 299.99764 * 24 22 20 28 28 C 1.46922 * 118.75940 * 306.41163 * 15 14 13 29 29 H 1.08000 * 120.00159 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99949 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00159 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47045 * 4.99874 * 3 2 1 33 33 H 1.09000 * 109.46903 * 245.00040 * 3 2 1 34 34 H 1.08999 * 109.47019 * 59.99930 * 4 3 2 35 35 H 1.08997 * 109.46933 * 299.99963 * 4 3 2 36 36 H 1.09001 * 109.47307 * 60.00318 * 7 5 4 37 37 H 1.09003 * 109.47229 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.46967 * 299.99764 * 7 5 4 39 39 H 1.00900 * 111.00256 * 278.95015 * 8 5 4 40 40 H 1.09000 * 109.47654 * 60.00312 * 9 8 5 41 41 H 1.09005 * 109.47443 * 299.99919 * 9 8 5 42 42 H 1.09006 * 109.45643 * 61.29307 * 12 10 9 43 43 H 1.08997 * 109.46149 * 301.33933 * 12 10 9 44 44 H 1.09002 * 109.49756 * 58.58775 * 13 12 10 45 45 H 1.09000 * 109.49883 * 178.65518 * 13 12 10 46 46 H 1.09001 * 109.58261 * 174.43824 * 14 13 12 47 47 H 1.08996 * 109.58319 * 294.86146 * 14 13 12 48 48 H 1.09001 * 109.47360 * 299.99598 * 18 16 15 49 49 H 1.08998 * 109.47712 * 59.99943 * 18 16 15 50 50 H 0.97005 * 119.99678 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.58306 * 293.82373 * 28 15 14 52 52 H 1.08994 * 109.70589 * 173.46329 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 1 3.0923 3.4866 1.1811 7 6 4.6801 2.7390 2.4305 8 7 4.6450 2.7351 -0.0182 9 6 4.9198 4.1323 -0.3793 10 6 5.8005 4.1720 -1.6298 11 1 5.3252 3.6016 -2.4278 12 6 5.9845 5.6233 -2.0792 13 6 6.8381 5.6618 -3.3488 14 6 8.2192 5.0702 -3.0497 15 7 8.0440 3.7266 -2.4799 16 6 8.6735 2.6645 -3.0205 17 8 8.5207 1.5607 -2.5417 18 6 9.5673 2.8484 -4.2198 19 16 10.2617 1.2490 -4.7057 20 6 11.2359 1.7455 -6.0874 21 1 11.2610 2.7832 -6.3855 22 6 11.9703 0.8028 -6.7933 23 7 11.9393 -0.4621 -6.4303 24 14 13.0025 1.3290 -8.2586 25 1 14.0182 2.3189 -7.8186 26 1 13.6852 0.1427 -8.8347 27 1 12.1251 1.9437 -9.2870 28 6 7.1695 3.5631 -1.3107 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 5.3882 1.9103 2.4306 37 1 5.2250 3.6830 2.4305 38 1 4.0533 2.6817 3.3205 39 1 5.5027 2.2193 0.1096 40 1 5.4363 4.6257 0.4441 41 1 3.9803 4.6475 -0.5796 42 1 6.4816 6.1876 -1.2901 43 1 5.0099 6.0666 -2.2834 44 1 6.3535 5.0772 -4.1309 45 1 6.9487 6.6938 -3.6817 46 1 8.7961 5.0045 -3.9722 47 1 8.7414 5.7052 -2.3341 48 1 8.9868 3.2589 -5.0460 49 1 10.3764 3.5341 -3.9683 50 1 12.4529 -1.1209 -6.9235 51 1 7.6063 4.0752 -0.4533 52 1 7.0540 2.5034 -1.0834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317144836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = -40.872861 kcal Electronic energy + Delta-G solvation = -27299.646358 eV Core-core repulsion = 23617.664590 eV Total energy + Delta-G solvation = -3681.981768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04607 -38.34374 -37.14195 -35.28337 -33.56893 -32.41850 -32.07655 -30.46198 -29.25177 -28.66903 -25.59982 -25.31416 -24.99061 -23.86877 -21.97821 -21.05104 -20.33934 -19.86566 -19.04712 -17.65566 -16.72071 -16.15225 -15.99497 -15.49102 -15.31777 -15.01660 -14.79278 -14.73079 -14.33998 -14.21173 -13.88665 -13.74525 -13.56006 -13.20355 -13.14906 -13.03700 -12.79784 -12.65107 -12.56719 -12.21698 -11.87958 -11.85301 -11.59874 -11.39623 -11.29299 -11.03630 -11.03475 -11.01046 -10.96706 -10.90326 -10.76214 -10.68553 -10.49863 -9.79598 -9.51056 -9.31300 -9.04793 -8.59000 -8.46505 -8.20921 -6.48402 -6.20152 -3.90651 2.11262 2.95968 3.09074 3.24121 3.26777 3.29949 3.61883 3.86017 4.21554 4.41716 4.55604 4.61738 4.68286 4.76951 4.84360 4.87813 4.92176 5.04047 5.07327 5.12063 5.14755 5.20938 5.24039 5.30721 5.36500 5.42851 5.45082 5.49517 5.51115 5.52884 5.60765 5.67384 5.70048 5.71260 5.76801 5.83065 5.84645 5.90985 5.95464 5.98556 6.05034 6.12805 6.13526 6.24441 6.46516 6.61443 6.67797 6.84146 7.16681 7.59251 7.61136 8.36159 8.60053 9.24864 10.87196 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.002200 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.480816 B =12721.762509 C =13925.980196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.088 4.088 4 C -0.102 4.102 5 C 0.083 3.917 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.684 5.684 9 C 0.069 3.931 10 C -0.102 4.102 11 H 0.086 0.914 12 C -0.111 4.111 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.619 5.619 16 C 0.535 3.465 17 O -0.516 6.516 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.118 3.882 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.345 0.655 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.269 0.731 51 H 0.057 0.943 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 12.860 15.319 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.165 4.165 3 C -0.125 4.125 4 C -0.140 4.140 5 C -0.027 4.027 6 H 0.093 0.907 7 C -0.243 4.243 8 N -0.316 5.316 9 C -0.061 4.061 10 C -0.122 4.122 11 H 0.104 0.896 12 C -0.149 4.149 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.391 6.391 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.005 4.005 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.165 0.835 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.279 10.955 15.555 27.087 hybrid contribution 1.474 1.941 -0.803 2.566 sum -17.805 12.896 14.752 26.476 Atomic orbital electron populations 1.23796 0.96047 1.01494 1.03020 1.23108 0.96000 0.99067 0.98308 1.20691 0.97514 0.94185 1.00145 1.21515 0.97616 0.97026 0.97834 1.21592 0.94904 0.98399 0.87810 0.90658 1.22516 1.00681 1.01974 0.99145 1.60596 1.22550 1.12397 1.36029 1.21951 0.98881 0.89505 0.95722 1.21572 0.95368 0.96819 0.98397 0.89586 1.21511 1.00045 0.95840 0.97544 1.21914 0.95921 1.01288 0.98202 1.21731 0.97148 0.83231 0.99507 1.48072 1.48016 1.07771 1.31616 1.20324 0.79595 0.83623 0.84174 1.90687 1.62220 1.24177 1.61988 1.23548 1.00893 1.07944 0.97684 1.85400 1.57714 1.02352 1.37921 1.22818 1.32654 0.96864 1.16029 0.91026 1.24988 0.96351 0.94501 0.97744 1.70011 1.39711 1.00974 1.39576 0.86232 0.79836 0.78113 0.81363 1.19959 1.20816 1.19936 1.21533 0.88868 1.02635 0.87478 0.88883 0.88870 0.87547 0.92342 0.89384 0.91591 0.92047 0.92152 0.92766 0.92110 0.83507 0.95206 0.90892 0.91963 0.91686 0.91178 0.90736 0.89232 0.91680 0.89316 0.89376 0.92141 0.92500 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.65 14.32 29.01 0.42 -1.23 16 2 C -0.15 -1.26 9.52 -36.02 -0.34 -1.61 16 3 C -0.09 -0.74 5.55 -27.88 -0.15 -0.90 16 4 C -0.10 -0.78 4.87 -26.73 -0.13 -0.92 16 5 C 0.08 0.61 2.59 -67.71 -0.18 0.44 16 6 H 0.08 0.54 7.80 -51.93 -0.40 0.14 16 7 C -0.18 -1.26 9.16 37.16 0.34 -0.92 16 8 N -0.68 -5.93 5.70 -106.72 -0.61 -6.54 16 9 C 0.07 0.55 4.94 -3.82 -0.02 0.53 16 10 C -0.10 -0.97 2.55 -90.50 -0.23 -1.20 16 11 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 12 C -0.11 -0.89 5.17 -26.69 -0.14 -1.03 16 13 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 14 C 0.11 1.17 6.34 -3.67 -0.02 1.15 16 15 N -0.62 -8.81 2.97 -172.72 -0.51 -9.32 16 16 C 0.53 10.29 7.72 -10.99 -0.08 10.20 16 17 O -0.52 -11.86 15.28 5.55 0.08 -11.78 16 18 C -0.15 -3.08 4.50 36.00 0.16 -2.92 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 C 0.12 1.41 5.35 -3.71 -0.02 1.39 16 29 H 0.09 0.68 7.84 -52.49 -0.41 0.27 16 30 H 0.09 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 33 H 0.09 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 37 H 0.05 0.37 7.45 -51.93 -0.39 -0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.35 3.30 6.86 -39.29 -0.27 3.03 16 40 H 0.03 0.22 7.44 -51.93 -0.39 -0.16 16 41 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 49 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.09 1.30 5.82 -51.93 -0.30 1.00 16 LS Contribution 422.43 15.07 6.37 6.37 Total: -1.00 -33.08 422.43 -11.08 -44.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -9.55 Total: 1.47 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.36 Total: -11.36 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.39 Total: -41.41 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.08 -11.08 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317144836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.289 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds