Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99764 * 2 1 4 4 C 1.53004 * 109.46789 * 125.00113 * 3 2 1 5 5 C 1.53002 * 109.46644 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46941 * 55.00205 * 5 4 3 7 7 C 1.52998 * 109.46780 * 175.00111 * 5 4 3 8 8 N 1.46898 * 109.47155 * 294.99966 * 5 4 3 9 9 C 1.46903 * 110.99585 * 155.00184 * 8 5 4 10 10 C 1.52996 * 109.46971 * 179.97438 * 9 8 5 11 11 H 1.08998 * 109.49973 * 54.93400 * 10 9 8 12 12 C 1.53042 * 109.50066 * 174.99852 * 10 9 8 13 13 C 1.53039 * 109.54198 * 181.31673 * 12 10 9 14 14 C 1.53196 * 109.33748 * 298.62051 * 13 12 10 15 15 N 1.46992 * 108.73878 * 54.61838 * 14 13 12 16 16 C 1.34784 * 120.60795 * 126.38575 * 15 14 13 17 17 O 1.21283 * 119.99359 * 180.02562 * 16 15 14 18 18 C 1.50691 * 120.00259 * 0.02599 * 16 15 14 19 19 S 1.81005 * 109.47111 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00250 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00267 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99787 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00113 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47390 * 59.99695 * 24 22 20 26 26 H 1.48503 * 109.46918 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47222 * 299.99764 * 24 22 20 28 28 C 1.46922 * 118.75940 * 306.41163 * 15 14 13 29 29 H 1.08000 * 120.00159 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99949 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00159 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47045 * 4.99874 * 3 2 1 33 33 H 1.09000 * 109.46903 * 245.00040 * 3 2 1 34 34 H 1.08999 * 109.47019 * 59.99930 * 4 3 2 35 35 H 1.08997 * 109.46933 * 299.99963 * 4 3 2 36 36 H 1.09001 * 109.47307 * 60.00318 * 7 5 4 37 37 H 1.09003 * 109.47229 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.46967 * 299.99764 * 7 5 4 39 39 H 1.00900 * 111.00256 * 278.95015 * 8 5 4 40 40 H 1.09000 * 109.47654 * 60.00312 * 9 8 5 41 41 H 1.09005 * 109.47443 * 299.99919 * 9 8 5 42 42 H 1.09006 * 109.45643 * 61.29307 * 12 10 9 43 43 H 1.08997 * 109.46149 * 301.33933 * 12 10 9 44 44 H 1.09002 * 109.49756 * 58.58775 * 13 12 10 45 45 H 1.09000 * 109.49883 * 178.65518 * 13 12 10 46 46 H 1.09001 * 109.58261 * 174.43824 * 14 13 12 47 47 H 1.08996 * 109.58319 * 294.86146 * 14 13 12 48 48 H 1.09001 * 109.47360 * 299.99598 * 18 16 15 49 49 H 1.08998 * 109.47712 * 59.99943 * 18 16 15 50 50 H 0.97005 * 119.99678 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.58306 * 293.82373 * 28 15 14 52 52 H 1.08994 * 109.70589 * 173.46329 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 1 3.0923 3.4866 1.1811 7 6 4.6801 2.7390 2.4305 8 7 4.6450 2.7351 -0.0182 9 6 4.9198 4.1323 -0.3793 10 6 5.8005 4.1720 -1.6298 11 1 5.3252 3.6016 -2.4278 12 6 5.9845 5.6233 -2.0792 13 6 6.8381 5.6618 -3.3488 14 6 8.2192 5.0702 -3.0497 15 7 8.0440 3.7266 -2.4799 16 6 8.6735 2.6645 -3.0205 17 8 8.5207 1.5607 -2.5417 18 6 9.5673 2.8484 -4.2198 19 16 10.2617 1.2490 -4.7057 20 6 11.2359 1.7455 -6.0874 21 1 11.2610 2.7832 -6.3855 22 6 11.9703 0.8028 -6.7933 23 7 11.9393 -0.4621 -6.4303 24 14 13.0025 1.3290 -8.2586 25 1 14.0182 2.3189 -7.8186 26 1 13.6852 0.1427 -8.8347 27 1 12.1251 1.9437 -9.2870 28 6 7.1695 3.5631 -1.3107 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 5.3882 1.9103 2.4306 37 1 5.2250 3.6830 2.4305 38 1 4.0533 2.6817 3.3205 39 1 5.5027 2.2193 0.1096 40 1 5.4363 4.6257 0.4441 41 1 3.9803 4.6475 -0.5796 42 1 6.4816 6.1876 -1.2901 43 1 5.0099 6.0666 -2.2834 44 1 6.3535 5.0772 -4.1309 45 1 6.9487 6.6938 -3.6817 46 1 8.7961 5.0045 -3.9722 47 1 8.7414 5.7052 -2.3341 48 1 8.9868 3.2589 -5.0460 49 1 10.3764 3.5341 -3.9683 50 1 12.4529 -1.1209 -6.9235 51 1 7.6063 4.0752 -0.4533 52 1 7.0540 2.5034 -1.0834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317144836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -60.388849 kcal Electronic energy + Delta-G solvation = -27300.492635 eV Core-core repulsion = 23617.664590 eV Total energy + Delta-G solvation = -3682.828045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22686 -39.23874 -38.13457 -36.03454 -34.59451 -34.50004 -32.92995 -31.51476 -30.36053 -29.43251 -27.70743 -26.14490 -26.07050 -24.52889 -22.79110 -21.80650 -21.19118 -20.52515 -20.34525 -19.47324 -18.16850 -17.12020 -16.88148 -16.73903 -16.61031 -16.39240 -15.90586 -15.68368 -15.56145 -15.14275 -14.90259 -14.64075 -14.50846 -14.42066 -14.21543 -14.03508 -13.77216 -13.61217 -13.43896 -13.27941 -13.17012 -12.88222 -12.86420 -12.65913 -12.49443 -12.30823 -12.10279 -12.01258 -11.80835 -11.72057 -11.67980 -11.59034 -11.47904 -11.22048 -11.13139 -10.82756 -10.26905 -10.17709 -9.64131 -9.22485 -8.67975 -8.34576 -6.13332 1.25284 1.43824 1.44943 1.45556 1.55321 1.58145 2.11949 2.27474 2.99256 3.21029 3.25228 3.63649 3.80257 3.85252 3.87241 4.03683 4.08976 4.14401 4.23272 4.24935 4.28801 4.30222 4.40358 4.43992 4.51679 4.57332 4.59126 4.66827 4.69769 4.79054 4.84035 4.85954 4.88215 4.91004 4.97359 5.04244 5.10104 5.13409 5.18776 5.26702 5.27606 5.35311 5.40886 5.44582 5.49876 5.60400 5.80582 5.95072 6.19211 6.22768 6.30625 6.44370 7.06152 7.15557 8.74472 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.002200 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.480816 B =12721.762509 C =13925.980196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.082 4.082 4 C -0.099 4.099 5 C 0.087 3.913 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.697 5.697 9 C 0.076 3.924 10 C -0.092 4.092 11 H 0.059 0.941 12 C -0.106 4.106 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.606 5.606 16 C 0.530 3.470 17 O -0.566 6.566 18 C -0.122 4.122 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.261 1.261 28 C 0.116 3.884 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.337 0.663 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.078 0.922 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.314 16.448 15.463 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.182 4.182 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.023 4.023 6 H 0.102 0.898 7 C -0.238 4.238 8 N -0.329 5.329 9 C -0.054 4.054 10 C -0.111 4.111 11 H 0.077 0.923 12 C -0.144 4.144 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.340 5.340 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.273 4.273 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.007 4.007 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.019 14.610 15.717 29.347 hybrid contribution 1.585 0.889 -0.761 1.970 sum -18.435 15.499 14.956 28.350 Atomic orbital electron populations 1.23963 0.95816 1.02330 1.01681 1.23167 0.96464 0.99031 0.99559 1.20608 0.97500 0.94392 0.99431 1.21491 0.97300 0.96902 0.97970 1.21583 0.94834 0.98304 0.87578 0.89775 1.22461 1.00491 1.01704 0.99170 1.60612 1.22330 1.12973 1.36958 1.21918 0.99090 0.89192 0.95152 1.21468 0.93609 0.97612 0.98435 0.92269 1.21515 1.01019 0.94428 0.97470 1.21906 0.94331 1.02320 0.98285 1.22090 0.99010 0.81522 0.99891 1.48106 1.46521 1.07892 1.31439 1.20138 0.79950 0.84156 0.83954 1.90669 1.64149 1.26325 1.63372 1.23356 1.01563 1.03489 0.98925 1.85595 1.58997 1.08984 1.38970 1.23157 1.32705 0.97503 1.16019 0.89902 1.26153 0.97626 0.94352 1.01103 1.70186 1.40884 1.02455 1.41263 0.84995 0.77990 0.77952 0.77007 1.18552 1.20396 1.18600 1.21707 0.90068 1.01761 0.87125 0.88020 0.88077 0.88042 0.91605 0.91395 0.93005 0.91074 0.93153 0.92422 0.91164 0.84413 0.93931 0.89817 0.90193 0.90006 0.92835 0.87941 0.89700 0.89104 0.87745 0.87548 0.91988 0.90411 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.05 14.32 67.78 0.97 -2.08 16 2 C -0.16 -2.84 9.52 25.65 0.24 -2.59 16 3 C -0.08 -1.38 5.55 29.85 0.17 -1.22 16 4 C -0.10 -1.50 4.87 30.60 0.15 -1.35 16 5 C 0.09 1.20 2.59 44.92 0.12 1.31 16 6 H 0.08 1.04 7.80 -2.39 -0.02 1.02 16 7 C -0.18 -2.24 9.16 71.98 0.66 -1.58 16 8 N -0.70 -11.90 5.70 -491.56 -2.80 -14.70 16 9 C 0.08 1.06 4.94 86.30 0.43 1.49 16 10 C -0.09 -1.61 2.55 -10.72 -0.03 -1.64 16 11 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 12 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 13 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 14 C 0.10 1.86 6.34 86.35 0.55 2.41 16 15 N -0.61 -16.77 2.97 -818.74 -2.43 -19.21 16 16 C 0.53 20.81 7.72 87.65 0.68 21.48 16 17 O -0.57 -27.40 15.28 -3.04 -0.05 -27.45 16 18 C -0.12 -5.05 4.50 71.23 0.32 -4.73 16 19 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 20 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 24 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 28 C 0.12 2.69 5.35 86.36 0.46 3.15 16 29 H 0.10 1.35 7.84 -2.91 -0.02 1.32 16 30 H 0.10 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.10 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 33 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 37 H 0.06 0.68 7.45 -2.39 -0.02 0.66 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.34 6.69 6.86 -89.69 -0.62 6.07 16 40 H 0.04 0.51 7.44 -2.39 -0.02 0.49 16 41 H 0.08 1.04 8.06 -2.38 -0.02 1.02 16 42 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.73 5.94 -2.39 -0.01 1.71 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 3.95 7.69 -2.39 -0.02 3.93 16 49 H 0.11 3.97 7.94 -2.40 -0.02 3.95 16 50 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.07 1.95 5.82 -2.39 -0.01 1.94 16 Total: -1.00 -75.57 422.43 2.29 -73.28 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.25 Total: 26.40 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 6.17 Total: -17.96 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -4.95 Total: -90.28 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -75.57 2.29 -73.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317144836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.894 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds