Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00400 * 2 1 4 4 C 1.52999 * 109.47251 * 124.99587 * 3 2 1 5 5 C 1.53003 * 109.46857 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46931 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99906 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47404 * 35.00274 * 7 6 5 9 9 C 1.53003 * 109.47281 * 275.00025 * 7 6 5 10 10 C 1.52998 * 109.46993 * 155.00316 * 7 6 5 11 11 C 1.53043 * 109.46159 * 180.02562 * 10 7 6 12 12 C 1.53192 * 109.31235 * 181.38403 * 11 10 7 13 13 N 1.46923 * 108.77880 * 305.36295 * 12 11 10 14 14 C 1.34777 * 120.63281 * 233.59095 * 13 12 11 15 15 O 1.21274 * 120.00135 * 0.27366 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00458 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47358 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.47273 * 210.00381 * 22 20 18 25 25 H 1.48505 * 109.46671 * 329.99771 * 22 20 18 26 26 C 1.46929 * 118.73573 * 53.85825 * 13 12 11 27 27 C 1.53046 * 109.46155 * 300.06873 * 10 7 6 28 28 H 1.07998 * 119.99587 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00643 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99587 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47164 * 4.99378 * 3 2 1 32 32 H 1.09004 * 109.46985 * 244.99709 * 3 2 1 33 33 H 1.09006 * 109.47116 * 60.00278 * 4 3 2 34 34 H 1.08995 * 109.47407 * 300.00018 * 4 3 2 35 35 H 1.09000 * 109.46835 * 60.00815 * 5 4 3 36 36 H 1.08995 * 109.47396 * 300.00355 * 5 4 3 37 37 H 1.00897 * 111.00199 * 303.95725 * 6 5 4 38 38 H 1.09002 * 109.46830 * 59.99709 * 9 7 6 39 39 H 1.08995 * 109.47165 * 180.02562 * 9 7 6 40 40 H 1.09005 * 109.46981 * 300.00193 * 9 7 6 41 41 H 1.09005 * 109.45166 * 60.03107 * 10 7 6 42 42 H 1.08998 * 109.49723 * 61.43203 * 11 10 7 43 43 H 1.09001 * 109.52382 * 301.35208 * 11 10 7 44 44 H 1.09003 * 109.58465 * 185.57606 * 12 11 10 45 45 H 1.09001 * 109.58900 * 65.15124 * 12 11 10 46 46 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 47 47 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 48 48 H 0.97002 * 120.00245 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.58459 * 65.93046 * 26 13 12 50 50 H 1.08999 * 109.58820 * 186.35494 * 26 13 12 51 51 H 1.08999 * 109.49649 * 298.56955 * 27 10 7 52 52 H 1.09002 * 109.49469 * 58.62944 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8006 2.6578 1.1812 6 7 4.7338 2.6844 2.3154 7 6 5.4875 3.9449 2.3475 8 1 4.8490 4.7589 2.0046 9 6 6.7076 3.8330 1.4310 10 6 5.9490 4.2269 3.7787 11 6 6.7337 5.5404 3.8119 12 6 7.2236 5.8019 5.2397 13 7 6.0706 5.7647 6.1496 14 6 5.8203 6.7935 6.9834 15 8 6.5472 7.7642 6.9840 16 6 4.6332 6.7405 7.9104 17 16 4.5686 8.2578 8.8951 18 6 3.1303 7.9351 9.8604 19 1 2.5886 7.0100 9.7295 20 6 2.6930 8.8702 10.7882 21 7 1.6182 8.6293 11.5089 22 14 3.6287 10.4712 11.0130 23 1 3.0817 11.4981 10.0903 24 1 3.4824 10.9374 12.4153 25 1 5.0662 10.2508 10.7121 26 6 5.1990 4.5819 6.1373 27 6 4.7286 4.3370 4.6956 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2356 2.1130 35 1 3.0959 3.4845 1.2706 36 1 4.3584 2.7548 0.2499 37 1 4.2484 2.5314 3.1867 38 1 6.3788 3.6320 0.4113 39 1 7.2671 4.7681 1.4551 40 1 7.3462 3.0189 1.7739 41 1 6.5881 3.4128 4.1211 42 1 6.0875 6.3583 3.4935 43 1 7.5897 5.4704 3.1407 44 1 7.6970 6.7824 5.2897 45 1 7.9405 5.0326 5.5267 46 1 3.7187 6.6479 7.3246 47 1 4.7285 5.8809 8.5738 48 1 1.3123 9.2830 12.1571 49 1 5.7542 3.7151 6.4961 50 1 4.3361 4.7572 6.7798 51 1 4.1016 5.1665 4.3686 52 1 4.1568 3.4100 4.6530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317673384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -37.462026 kcal Electronic energy + Delta-G solvation = -27005.376171 eV Core-core repulsion = 23323.542308 eV Total energy + Delta-G solvation = -3681.833863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23971 -38.60649 -36.96225 -35.69183 -33.51939 -32.44607 -31.73983 -31.16878 -29.73792 -28.63760 -26.09558 -25.63018 -24.79462 -23.20285 -21.94040 -21.65369 -20.36597 -20.13170 -19.13902 -17.72196 -16.95191 -16.54137 -15.89402 -15.70814 -15.54655 -15.24478 -14.96075 -14.91278 -14.44432 -14.31231 -13.96220 -13.82262 -13.64749 -13.44117 -13.11259 -12.97123 -12.80204 -12.73026 -12.65758 -12.25013 -12.03640 -11.95539 -11.85926 -11.75807 -11.44609 -11.29146 -11.26301 -11.08530 -11.01554 -10.82352 -10.62593 -10.61086 -10.55084 -9.86286 -9.73523 -9.45638 -9.01173 -8.77859 -8.59166 -8.49532 -6.92735 -6.29745 -4.01440 1.87376 2.71415 2.93546 3.19922 3.32620 3.50095 3.58241 3.72354 4.32028 4.33400 4.38489 4.45152 4.46387 4.56118 4.70256 4.77337 4.86132 4.90784 5.00470 5.03423 5.07176 5.09280 5.09732 5.12676 5.19521 5.21225 5.33017 5.38002 5.41757 5.43156 5.49730 5.52519 5.60661 5.63191 5.67279 5.71033 5.74490 5.76251 5.81775 5.87769 5.91018 5.97910 6.01402 6.14074 6.22166 6.36098 6.58107 6.72212 7.04953 7.47479 7.93260 8.40398 8.44507 9.16496 10.79420 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.002070 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.651945 B =13524.878092 C =15401.449573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.094 4.094 4 C -0.113 4.113 5 C 0.058 3.942 6 N -0.688 5.688 7 C 0.089 3.911 8 H 0.044 0.956 9 C -0.141 4.141 10 C -0.088 4.088 11 C -0.128 4.128 12 C 0.113 3.887 13 N -0.618 5.618 14 C 0.533 3.467 15 O -0.520 6.520 16 C -0.121 4.121 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.109 3.891 27 C -0.134 4.134 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.342 0.658 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.271 0.729 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -17.110 -24.003 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.151 4.151 5 C -0.071 4.071 6 N -0.322 5.322 7 C -0.021 4.021 8 H 0.062 0.938 9 C -0.199 4.199 10 C -0.107 4.107 11 C -0.167 4.167 12 C -0.009 4.009 13 N -0.354 5.354 14 C 0.321 3.679 15 O -0.395 6.395 16 C -0.272 4.272 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.014 4.014 27 C -0.173 4.173 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.109 0.891 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.870 -15.943 -24.175 29.763 hybrid contribution -1.579 0.022 0.529 1.666 sum 5.291 -15.921 -23.646 28.994 Atomic orbital electron populations 1.23883 0.96029 1.01898 1.01482 1.22956 0.96012 0.98518 0.99625 1.20732 0.98161 0.95449 0.98852 1.21508 0.97533 0.97872 0.98185 1.22020 0.93601 0.96505 0.95014 1.60594 1.29850 1.35068 1.06658 1.21532 0.95290 0.90079 0.95194 0.93849 1.21843 0.97356 1.01798 0.98876 1.21312 0.97069 0.98348 0.93933 1.22006 1.00544 0.97176 0.96926 1.21521 0.87919 1.03408 0.88087 1.48075 1.28938 1.18709 1.39676 1.20295 0.85899 0.81705 0.79994 1.90681 1.49118 1.31858 1.67841 1.23310 0.98427 1.05105 1.00332 1.84798 1.39034 1.21563 1.46284 1.22306 1.11111 1.08971 1.24442 0.89418 1.24717 0.94353 0.98215 0.94054 1.69939 1.22500 1.36025 1.23213 0.86731 0.83029 0.83713 0.78361 1.19226 1.19931 1.15922 1.21791 0.94753 0.88000 0.96889 1.22114 0.97781 1.02124 0.95280 0.88611 0.88549 0.87405 0.91579 0.90956 0.90936 0.91933 0.95292 0.91079 0.83762 0.93071 0.92194 0.91970 0.90006 0.91461 0.90338 0.88880 0.91781 0.88651 0.88555 0.91944 0.91200 0.89107 0.91302 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.15 -0.93 9.52 -36.03 -0.34 -1.27 16 3 C -0.09 -0.54 5.66 -27.89 -0.16 -0.70 16 4 C -0.11 -0.68 5.46 -26.73 -0.15 -0.83 16 5 C 0.06 0.38 5.48 -3.82 -0.02 0.36 16 6 N -0.69 -4.92 6.31 -106.72 -0.67 -5.59 16 7 C 0.09 0.65 2.23 -67.71 -0.15 0.50 16 8 H 0.04 0.36 7.80 -51.93 -0.40 -0.04 16 9 C -0.14 -0.98 9.07 37.16 0.34 -0.64 16 10 C -0.09 -0.68 1.87 -90.58 -0.17 -0.85 16 11 C -0.13 -1.12 5.04 -26.61 -0.13 -1.26 16 12 C 0.11 1.28 6.43 -3.71 -0.02 1.25 16 13 N -0.62 -8.27 2.97 -172.50 -0.51 -8.78 16 14 C 0.53 9.70 7.72 -10.98 -0.08 9.61 16 15 O -0.52 -11.36 15.27 5.56 0.08 -11.27 16 16 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 22 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 C 0.11 1.11 6.37 -3.49 -0.02 1.09 16 27 C -0.13 -1.12 5.17 -26.39 -0.14 -1.25 16 28 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 29 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.03 0.21 8.05 -51.93 -0.42 -0.21 16 36 H 0.07 0.48 7.43 -51.93 -0.39 0.09 16 37 H 0.34 2.34 6.14 -39.29 -0.24 2.10 16 38 H 0.05 0.35 7.45 -51.93 -0.39 -0.03 16 39 H 0.06 0.39 6.40 -51.93 -0.33 0.05 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.57 6.36 -51.93 -0.33 0.24 16 44 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 1.74 7.70 -51.92 -0.40 1.34 16 47 H 0.10 1.76 7.93 -51.91 -0.41 1.35 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.07 0.50 6.16 -51.93 -0.32 0.18 16 LS Contribution 415.87 15.07 6.27 6.27 Total: -1.00 -32.95 415.87 -10.37 -43.33 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -9.35 Total: -0.75 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.26 Total: -8.92 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.41 Total: -40.12 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.95 -10.37 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317673384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.865 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds