Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00400 * 2 1 4 4 C 1.52999 * 109.47251 * 124.99587 * 3 2 1 5 5 C 1.53003 * 109.46857 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46931 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99906 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47404 * 35.00274 * 7 6 5 9 9 C 1.53003 * 109.47281 * 275.00025 * 7 6 5 10 10 C 1.52998 * 109.46993 * 155.00316 * 7 6 5 11 11 C 1.53043 * 109.46159 * 180.02562 * 10 7 6 12 12 C 1.53192 * 109.31235 * 181.38403 * 11 10 7 13 13 N 1.46923 * 108.77880 * 305.36295 * 12 11 10 14 14 C 1.34777 * 120.63281 * 233.59095 * 13 12 11 15 15 O 1.21274 * 120.00135 * 0.27366 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00458 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47358 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.47273 * 210.00381 * 22 20 18 25 25 H 1.48505 * 109.46671 * 329.99771 * 22 20 18 26 26 C 1.46929 * 118.73573 * 53.85825 * 13 12 11 27 27 C 1.53046 * 109.46155 * 300.06873 * 10 7 6 28 28 H 1.07998 * 119.99587 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00643 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99587 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47164 * 4.99378 * 3 2 1 32 32 H 1.09004 * 109.46985 * 244.99709 * 3 2 1 33 33 H 1.09006 * 109.47116 * 60.00278 * 4 3 2 34 34 H 1.08995 * 109.47407 * 300.00018 * 4 3 2 35 35 H 1.09000 * 109.46835 * 60.00815 * 5 4 3 36 36 H 1.08995 * 109.47396 * 300.00355 * 5 4 3 37 37 H 1.00897 * 111.00199 * 303.95725 * 6 5 4 38 38 H 1.09002 * 109.46830 * 59.99709 * 9 7 6 39 39 H 1.08995 * 109.47165 * 180.02562 * 9 7 6 40 40 H 1.09005 * 109.46981 * 300.00193 * 9 7 6 41 41 H 1.09005 * 109.45166 * 60.03107 * 10 7 6 42 42 H 1.08998 * 109.49723 * 61.43203 * 11 10 7 43 43 H 1.09001 * 109.52382 * 301.35208 * 11 10 7 44 44 H 1.09003 * 109.58465 * 185.57606 * 12 11 10 45 45 H 1.09001 * 109.58900 * 65.15124 * 12 11 10 46 46 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 47 47 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 48 48 H 0.97002 * 120.00245 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.58459 * 65.93046 * 26 13 12 50 50 H 1.08999 * 109.58820 * 186.35494 * 26 13 12 51 51 H 1.08999 * 109.49649 * 298.56955 * 27 10 7 52 52 H 1.09002 * 109.49469 * 58.62944 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8006 2.6578 1.1812 6 7 4.7338 2.6844 2.3154 7 6 5.4875 3.9449 2.3475 8 1 4.8490 4.7589 2.0046 9 6 6.7076 3.8330 1.4310 10 6 5.9490 4.2269 3.7787 11 6 6.7337 5.5404 3.8119 12 6 7.2236 5.8019 5.2397 13 7 6.0706 5.7647 6.1496 14 6 5.8203 6.7935 6.9834 15 8 6.5472 7.7642 6.9840 16 6 4.6332 6.7405 7.9104 17 16 4.5686 8.2578 8.8951 18 6 3.1303 7.9351 9.8604 19 1 2.5886 7.0100 9.7295 20 6 2.6930 8.8702 10.7882 21 7 1.6182 8.6293 11.5089 22 14 3.6287 10.4712 11.0130 23 1 3.0817 11.4981 10.0903 24 1 3.4824 10.9374 12.4153 25 1 5.0662 10.2508 10.7121 26 6 5.1990 4.5819 6.1373 27 6 4.7286 4.3370 4.6956 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2356 2.1130 35 1 3.0959 3.4845 1.2706 36 1 4.3584 2.7548 0.2499 37 1 4.2484 2.5314 3.1867 38 1 6.3788 3.6320 0.4113 39 1 7.2671 4.7681 1.4551 40 1 7.3462 3.0189 1.7739 41 1 6.5881 3.4128 4.1211 42 1 6.0875 6.3583 3.4935 43 1 7.5897 5.4704 3.1407 44 1 7.6970 6.7824 5.2897 45 1 7.9405 5.0326 5.5267 46 1 3.7187 6.6479 7.3246 47 1 4.7285 5.8809 8.5738 48 1 1.3123 9.2830 12.1571 49 1 5.7542 3.7151 6.4961 50 1 4.3361 4.7572 6.7798 51 1 4.1016 5.1665 4.3686 52 1 4.1568 3.4100 4.6530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317673384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -57.029333 kcal Electronic energy + Delta-G solvation = -27006.224673 eV Core-core repulsion = 23323.542308 eV Total energy + Delta-G solvation = -3682.682365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31299 -39.54287 -37.71565 -36.41297 -34.68564 -34.28932 -32.61020 -31.93919 -30.71198 -29.58441 -27.87186 -26.76908 -25.53528 -24.02663 -22.70790 -22.26535 -21.10842 -20.59891 -20.37741 -19.53500 -18.25683 -17.22509 -17.18426 -16.86434 -16.65183 -16.42862 -16.02113 -15.79000 -15.43724 -15.14559 -15.07087 -14.92727 -14.68541 -14.46178 -14.34639 -14.04318 -13.61958 -13.50716 -13.39665 -13.35142 -13.32098 -13.03099 -12.90623 -12.65246 -12.53898 -12.42668 -12.34696 -12.16036 -11.87244 -11.79168 -11.63405 -11.46341 -11.37108 -11.26495 -11.18409 -10.87973 -10.52961 -10.19416 -9.70354 -9.34424 -9.01892 -8.52743 -6.23869 0.96386 1.30103 1.41566 1.45068 1.50911 1.53498 2.07558 2.23956 2.66984 2.85345 3.15455 3.50301 3.67403 3.71832 3.92797 3.95161 4.07455 4.08621 4.15912 4.27120 4.29398 4.34745 4.38813 4.42983 4.46761 4.50082 4.54485 4.64485 4.67183 4.70867 4.81656 4.85218 4.90183 4.92942 4.95181 5.00879 5.02921 5.06759 5.12615 5.15941 5.26521 5.37291 5.42001 5.48845 5.58212 5.69607 5.77226 5.90892 6.09937 6.15402 6.25417 6.51344 6.92372 7.07914 8.59521 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.002070 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.651945 B =13524.878092 C =15401.449573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.093 4.093 4 C -0.105 4.105 5 C 0.060 3.940 6 N -0.689 5.689 7 C 0.093 3.907 8 H 0.033 0.967 9 C -0.139 4.139 10 C -0.079 4.079 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.604 5.604 14 C 0.532 3.468 15 O -0.565 6.565 16 C -0.106 4.106 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.238 1.238 26 C 0.101 3.899 27 C -0.129 4.129 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.344 0.656 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.277 0.723 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.054 0.946 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 -18.468 -25.366 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.177 4.177 3 C -0.130 4.130 4 C -0.143 4.143 5 C -0.069 4.069 6 N -0.323 5.323 7 C -0.017 4.017 8 H 0.051 0.949 9 C -0.196 4.196 10 C -0.098 4.098 11 C -0.158 4.158 12 C -0.013 4.013 13 N -0.338 5.338 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.256 4.256 17 S 0.049 5.951 18 C -0.675 4.675 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.162 1.162 26 C -0.021 4.021 27 C -0.167 4.167 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.073 0.927 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.871 -17.355 -25.565 31.886 hybrid contribution -1.904 0.268 0.834 2.096 sum 5.967 -17.087 -24.731 30.647 Atomic orbital electron populations 1.24013 0.96231 1.02299 1.01513 1.23079 0.96147 0.98895 0.99604 1.20718 0.98067 0.95262 0.98986 1.21421 0.97345 0.97433 0.98098 1.21997 0.93424 0.96584 0.94868 1.60623 1.30011 1.34729 1.06903 1.21462 0.95388 0.89885 0.94920 0.94898 1.21822 0.97062 1.02072 0.98675 1.21244 0.96664 0.97871 0.94055 1.21947 1.01178 0.97255 0.95402 1.21728 0.87444 1.03049 0.89033 1.48113 1.29480 1.18091 1.38145 1.20016 0.85093 0.82384 0.80542 1.90664 1.50430 1.33840 1.69485 1.23277 1.00144 1.02003 1.00212 1.84727 1.37250 1.25983 1.47131 1.22435 1.12065 1.08064 1.24963 0.91904 1.25557 0.95198 1.01353 0.93878 1.70013 1.23842 1.37448 1.24032 0.85873 0.81530 0.79906 0.79100 1.18735 1.18220 1.16181 1.22092 0.94442 0.87259 0.98307 1.22075 0.98063 1.02643 0.93906 0.88632 0.87877 0.86813 0.91864 0.90456 0.91066 0.92285 0.95831 0.91070 0.83531 0.93158 0.91667 0.91936 0.89004 0.92984 0.88289 0.91099 0.89500 0.87350 0.87076 0.91344 0.88756 0.89643 0.92712 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.16 -1.74 9.52 25.64 0.24 -1.49 16 3 C -0.09 -0.94 5.66 29.85 0.17 -0.77 16 4 C -0.11 -1.10 5.46 30.59 0.17 -0.93 16 5 C 0.06 0.70 5.48 86.30 0.47 1.17 16 6 N -0.69 -8.25 6.31 -491.56 -3.10 -11.35 16 7 C 0.09 1.16 2.23 44.92 0.10 1.26 16 8 H 0.03 0.49 7.80 -2.39 -0.02 0.48 16 9 C -0.14 -1.58 9.07 71.98 0.65 -0.93 16 10 C -0.08 -1.00 1.87 -10.76 -0.02 -1.02 16 11 C -0.12 -1.83 5.04 30.67 0.15 -1.68 16 12 C 0.11 2.26 6.43 86.36 0.56 2.82 16 13 N -0.60 -15.19 2.97 -818.06 -2.43 -17.62 16 14 C 0.53 19.05 7.72 87.66 0.68 19.72 16 15 O -0.57 -24.83 15.27 -3.01 -0.05 -24.87 16 16 C -0.11 -4.08 4.50 71.24 0.32 -3.76 16 17 S -0.18 -9.10 18.55 -56.49 -1.05 -10.14 16 18 C -0.53 -30.83 10.04 67.96 0.68 -30.15 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 20 C 0.05 2.69 5.50 84.86 0.47 3.15 16 21 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 22 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 26 C 0.10 1.81 6.37 86.51 0.55 2.36 16 27 C -0.13 -1.81 5.17 30.82 0.16 -1.65 16 28 H 0.10 1.03 7.84 -2.91 -0.02 1.01 16 29 H 0.10 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.06 0.68 7.79 -2.39 -0.02 0.66 16 32 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.02 0.30 8.05 -2.39 -0.02 0.28 16 36 H 0.07 0.83 7.43 -2.39 -0.02 0.81 16 37 H 0.34 3.79 6.14 -89.70 -0.55 3.23 16 38 H 0.05 0.59 7.45 -2.39 -0.02 0.57 16 39 H 0.06 0.67 6.40 -2.39 -0.02 0.65 16 40 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.15 6.36 -2.39 -0.02 1.14 16 44 H 0.07 1.83 7.00 -2.39 -0.02 1.82 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.11 3.89 7.70 -2.39 -0.02 3.87 16 47 H 0.11 3.95 7.93 -2.39 -0.02 3.93 16 48 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 49 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.09 1.65 5.93 -2.39 -0.01 1.64 16 51 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.10 0.98 6.16 -2.39 -0.01 0.97 16 Total: -1.00 -71.80 415.87 2.20 -69.61 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.29 Total: 15.85 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 6.32 Total: -13.19 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -5.23 Total: -84.40 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.14 kcal Total: -71.80 2.20 -69.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317673384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.577 kcal (2) G-P(sol) polarization free energy of solvation -71.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds