Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.53004 * 109.46772 * 119.99437 * 2 1 3 5 5 C 1.53002 * 109.46951 * 177.45262 * 4 2 1 6 6 H 1.08998 * 109.47139 * 53.72627 * 5 4 2 7 7 C 1.52994 * 109.47324 * 293.72065 * 5 4 2 8 8 C 1.53001 * 109.47123 * 173.71989 * 5 4 2 9 9 N 1.46892 * 109.47319 * 184.99892 * 8 5 4 10 10 C 1.47812 * 110.72767 * 61.01682 * 9 8 5 11 11 C 1.56010 * 105.11021 * 122.75300 * 10 9 8 12 12 H 1.09002 * 116.85495 * 159.12224 * 11 10 9 13 13 C 1.57407 * 99.75797 * 32.59571 * 11 10 9 14 14 C 1.49714 * 111.00140 * 178.62079 * 9 8 5 15 15 H 1.09001 * 116.79392 * 75.75551 * 14 9 8 16 16 C 1.56016 * 104.08465 * 306.12741 * 14 9 8 17 17 N 1.47860 * 105.11079 * 288.80296 * 16 14 9 18 18 C 1.34778 * 126.92485 * 181.90296 * 17 16 14 19 19 O 1.21280 * 119.99828 * 180.02562 * 18 17 16 20 20 C 1.50694 * 120.00228 * 0.02562 * 18 17 16 21 21 S 1.80999 * 109.47466 * 180.02562 * 20 18 17 22 22 C 1.76205 * 100.00108 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00006 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 120.00455 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47403 * 89.99805 * 26 24 22 28 28 H 1.48506 * 109.46958 * 210.00022 * 26 24 22 29 29 H 1.48509 * 109.47412 * 329.99784 * 26 24 22 30 30 H 1.08996 * 109.47179 * 184.94167 * 1 2 3 31 31 H 1.09003 * 109.46993 * 304.94513 * 1 2 3 32 32 H 1.08999 * 109.46377 * 64.94459 * 1 2 3 33 33 H 1.08997 * 109.47274 * 239.99239 * 2 1 3 34 34 H 1.08995 * 109.47297 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46904 * 299.99495 * 3 2 1 36 36 H 1.08997 * 109.47616 * 59.99449 * 3 2 1 37 37 H 1.08998 * 109.47296 * 57.45514 * 4 2 1 38 38 H 1.09002 * 109.47156 * 297.45093 * 4 2 1 39 39 H 1.08999 * 109.47293 * 185.47256 * 7 5 4 40 40 H 1.08997 * 109.47140 * 305.47677 * 7 5 4 41 41 H 1.09007 * 109.47076 * 65.47010 * 7 5 4 42 42 H 1.09008 * 109.46901 * 64.99537 * 8 5 4 43 43 H 1.09006 * 109.47139 * 305.00408 * 8 5 4 44 44 H 1.08999 * 110.42822 * 3.77969 * 10 9 8 45 45 H 1.08998 * 110.26076 * 241.65218 * 10 9 8 46 46 H 1.08996 * 112.51182 * 191.80129 * 13 11 10 47 47 H 1.08997 * 112.38940 * 64.31674 * 13 11 10 48 48 H 1.09001 * 110.31368 * 169.88956 * 16 14 9 49 49 H 1.09004 * 110.31496 * 47.71131 * 16 14 9 50 50 H 1.08999 * 109.47425 * 300.00630 * 20 18 17 51 51 H 1.08999 * 109.47324 * 60.00332 * 20 18 17 52 52 H 0.96994 * 120.00617 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5686 -0.7769 1.2178 6 1 3.9662 0.2289 1.0824 7 6 4.0227 -1.6653 0.0579 8 6 4.0852 -1.3562 2.5363 9 7 5.5529 -1.2992 2.5546 10 6 6.0234 0.0984 2.4537 11 6 6.9058 0.3229 3.7206 12 1 7.6242 1.1417 3.6815 13 6 7.4984 -1.1251 3.8930 14 6 6.0944 -1.8280 3.8463 15 1 6.0874 -2.9103 3.9757 16 6 5.3511 -0.9974 4.9380 17 7 5.9252 0.3620 4.8454 18 6 5.6203 1.4240 5.6173 19 8 6.1715 2.4879 5.4300 20 6 4.5947 1.2894 6.7131 21 16 4.4083 2.8763 7.5635 22 6 3.1867 2.4424 8.7568 23 1 2.7961 1.4361 8.7884 24 6 2.7272 3.3937 9.6571 25 7 1.8150 3.0695 10.5489 26 14 3.4035 5.1342 9.6030 27 1 2.5737 5.9595 8.6889 28 1 3.3703 5.7207 10.9669 29 1 4.8042 5.1060 9.1102 30 1 -0.3633 -1.0238 0.0885 31 1 -0.3633 0.5887 0.8424 32 1 -0.3632 0.4352 -0.9310 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6398 -1.7348 1.2726 38 1 1.7144 -0.1815 2.1387 39 1 5.1056 -1.7839 0.0934 40 1 3.5472 -2.6426 0.1409 41 1 3.7387 -1.2023 -0.8872 42 1 3.7606 -2.3926 2.6298 43 1 3.6885 -0.7748 3.3687 44 1 5.1774 0.7857 2.4550 45 1 6.6177 0.2323 1.5498 46 1 7.9979 -1.2601 4.8523 47 1 8.1353 -1.4152 3.0574 48 1 5.5356 -1.4198 5.9258 49 1 4.2813 -0.9714 4.7306 50 1 3.6383 0.9944 6.2814 51 1 4.9210 0.5314 7.4252 52 1 1.4937 3.7344 11.1778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318187975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -14.719540 kcal Electronic energy + Delta-G solvation = -28585.041859 eV Core-core repulsion = 24904.194184 eV Total energy + Delta-G solvation = -3680.847675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43416 -38.56696 -37.76894 -34.72602 -32.78138 -32.45985 -30.82772 -29.91402 -28.77960 -27.39340 -26.91210 -25.64853 -25.55241 -24.84834 -22.04911 -20.99677 -20.48149 -19.63372 -18.57365 -17.75493 -16.92655 -16.84772 -16.24834 -15.50622 -15.26797 -15.03938 -14.95119 -14.39192 -14.14895 -13.99297 -13.86306 -13.56172 -13.28348 -13.07888 -12.83260 -12.82396 -12.64800 -12.54855 -12.38036 -12.20825 -12.00299 -11.82579 -11.67908 -11.57854 -11.43544 -11.38444 -11.28864 -11.25303 -11.14912 -11.02767 -10.66701 -10.62020 -10.48218 -10.40367 -9.87902 -9.58727 -9.02564 -8.75529 -8.52874 -8.38246 -6.94846 -6.31085 -4.03184 2.60962 2.89563 3.12387 3.31312 3.48687 3.54062 3.56608 4.06238 4.23877 4.31144 4.48815 4.50039 4.59601 4.63718 4.69705 4.75350 4.82783 4.99016 5.00095 5.07940 5.14425 5.17631 5.24883 5.26791 5.38388 5.41453 5.45093 5.47112 5.52715 5.53242 5.57287 5.63215 5.64164 5.69073 5.71598 5.73422 5.74484 5.79500 5.82904 5.89081 5.97233 5.98123 6.03659 6.12107 6.18959 6.22808 6.28595 6.53654 6.76819 7.55998 7.91916 8.38861 8.39509 9.15017 10.78168 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.003169 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.639568 B = 8833.205989 C =10534.248120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.111 4.111 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.137 4.137 8 C 0.040 3.960 9 N -0.508 5.508 10 C 0.026 3.974 11 C 0.112 3.888 12 H 0.125 0.875 13 C -0.134 4.134 14 C 0.053 3.947 15 H 0.134 0.866 16 C 0.060 3.940 17 N -0.626 5.626 18 C 0.550 3.450 19 O -0.518 6.518 20 C -0.117 4.117 21 S -0.141 6.141 22 C -0.521 4.521 23 H 0.087 0.913 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.095 0.905 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -13.323 -22.040 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.149 4.149 5 C -0.110 4.110 6 H 0.093 0.907 7 C -0.195 4.195 8 C -0.088 4.088 9 N -0.231 5.231 10 C -0.103 4.103 11 C 0.008 3.992 12 H 0.143 0.857 13 C -0.172 4.172 14 C -0.055 4.055 15 H 0.151 0.849 16 C -0.064 4.064 17 N -0.364 5.364 18 C 0.338 3.662 19 O -0.392 6.392 20 C -0.267 4.267 21 S 0.085 5.915 22 C -0.669 4.669 23 H 0.105 0.895 24 C -0.112 4.112 25 N -0.517 5.517 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.113 0.887 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.137 -11.905 -22.533 26.213 hybrid contribution -1.115 -0.061 1.249 1.675 sum 5.022 -11.966 -21.284 24.928 Atomic orbital electron populations 1.21855 0.95404 1.01619 1.01728 1.21111 0.95473 0.96369 0.98418 1.21914 1.01172 0.95970 1.01760 1.21694 0.94718 1.00493 0.98031 1.21263 0.94989 1.00077 0.94673 0.90701 1.21754 1.02059 0.98767 0.96895 1.22534 0.87682 1.01379 0.97223 1.64920 1.09180 1.17019 1.32028 1.23628 0.99171 0.89712 0.97776 1.24055 0.91078 0.98188 0.85868 0.85673 1.23998 0.95979 0.94172 1.03054 1.24650 0.94397 0.99141 0.87303 0.84870 1.23288 0.99153 0.83240 1.00762 1.49253 1.42604 1.10227 1.34318 1.19976 0.82580 0.82283 0.81316 1.90703 1.52622 1.26357 1.69532 1.23240 0.99850 1.05133 0.98493 1.84781 1.55309 1.11104 1.40289 1.22298 1.24776 1.01624 1.18184 0.89459 1.24703 0.93809 0.98948 0.93771 1.69931 1.28133 1.35262 1.18331 0.86743 0.82390 0.84315 0.78460 1.19182 1.19879 1.15918 0.92819 0.92589 0.92910 0.91158 0.92465 0.92981 0.92560 0.91950 0.91940 0.91590 0.93273 0.93377 0.90580 0.93502 0.91598 0.89585 0.89732 0.88837 0.90835 0.90068 0.88933 0.88694 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.76 2.78 -90.62 -0.25 -1.01 16 3 C -0.15 -1.31 8.91 37.16 0.33 -0.98 16 4 C -0.11 -0.93 4.17 -26.73 -0.11 -1.04 16 5 C -0.09 -0.76 2.07 -90.62 -0.19 -0.95 16 6 H 0.07 0.71 4.48 -51.93 -0.23 0.48 16 7 C -0.14 -1.05 8.79 37.15 0.33 -0.72 16 8 C 0.04 0.35 3.68 -3.83 -0.01 0.33 16 9 N -0.51 -4.42 4.70 -217.15 -1.02 -5.44 16 10 C 0.03 0.26 5.43 -1.71 -0.01 0.25 16 11 C 0.11 1.25 5.24 -62.38 -0.33 0.92 16 12 H 0.13 1.49 8.06 -51.93 -0.42 1.07 16 13 C -0.13 -1.12 6.83 -22.11 -0.15 -1.27 16 14 C 0.05 0.43 5.28 -62.31 -0.33 0.10 16 15 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.06 0.63 5.64 -1.68 -0.01 0.62 16 17 N -0.63 -8.61 2.95 -156.61 -0.46 -9.07 16 18 C 0.55 10.21 7.91 -10.99 -0.09 10.13 16 19 O -0.52 -11.46 16.21 5.56 0.09 -11.37 16 20 C -0.12 -2.34 5.44 36.00 0.20 -2.15 16 21 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 22 C -0.52 -15.13 10.04 30.94 0.31 -14.81 16 23 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 24 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 25 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 26 Si 0.86 21.89 27.74 -169.99 -4.71 17.18 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.54 6.62 -51.93 -0.34 0.19 16 34 H 0.06 0.50 6.36 -51.93 -0.33 0.17 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.55 7.61 -51.93 -0.40 0.15 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.35 6.82 -51.93 -0.35 0.00 16 42 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.05 0.49 5.49 -51.93 -0.29 0.21 16 44 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.88 5.21 -51.93 -0.27 0.61 16 50 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 51 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 52 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -32.79 405.68 -10.59 -43.37 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -9.31 Total: -0.65 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.07 Total: -8.66 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.71 Total: -40.36 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.79 -10.59 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318187975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.655 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds