Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.53004 * 109.46772 * 119.99437 * 2 1 3 5 5 C 1.53002 * 109.46951 * 177.45262 * 4 2 1 6 6 H 1.08998 * 109.47139 * 53.72627 * 5 4 2 7 7 C 1.52994 * 109.47324 * 293.72065 * 5 4 2 8 8 C 1.53001 * 109.47123 * 173.71989 * 5 4 2 9 9 N 1.46892 * 109.47319 * 184.99892 * 8 5 4 10 10 C 1.47812 * 110.72767 * 61.01682 * 9 8 5 11 11 C 1.56010 * 105.11021 * 122.75300 * 10 9 8 12 12 H 1.09002 * 116.85495 * 159.12224 * 11 10 9 13 13 C 1.57407 * 99.75797 * 32.59571 * 11 10 9 14 14 C 1.49714 * 111.00140 * 178.62079 * 9 8 5 15 15 H 1.09001 * 116.79392 * 75.75551 * 14 9 8 16 16 C 1.56016 * 104.08465 * 306.12741 * 14 9 8 17 17 N 1.47860 * 105.11079 * 288.80296 * 16 14 9 18 18 C 1.34778 * 126.92485 * 181.90296 * 17 16 14 19 19 O 1.21280 * 119.99828 * 180.02562 * 18 17 16 20 20 C 1.50694 * 120.00228 * 0.02562 * 18 17 16 21 21 S 1.80999 * 109.47466 * 180.02562 * 20 18 17 22 22 C 1.76205 * 100.00108 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00006 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 120.00455 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47403 * 89.99805 * 26 24 22 28 28 H 1.48506 * 109.46958 * 210.00022 * 26 24 22 29 29 H 1.48509 * 109.47412 * 329.99784 * 26 24 22 30 30 H 1.08996 * 109.47179 * 184.94167 * 1 2 3 31 31 H 1.09003 * 109.46993 * 304.94513 * 1 2 3 32 32 H 1.08999 * 109.46377 * 64.94459 * 1 2 3 33 33 H 1.08997 * 109.47274 * 239.99239 * 2 1 3 34 34 H 1.08995 * 109.47297 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46904 * 299.99495 * 3 2 1 36 36 H 1.08997 * 109.47616 * 59.99449 * 3 2 1 37 37 H 1.08998 * 109.47296 * 57.45514 * 4 2 1 38 38 H 1.09002 * 109.47156 * 297.45093 * 4 2 1 39 39 H 1.08999 * 109.47293 * 185.47256 * 7 5 4 40 40 H 1.08997 * 109.47140 * 305.47677 * 7 5 4 41 41 H 1.09007 * 109.47076 * 65.47010 * 7 5 4 42 42 H 1.09008 * 109.46901 * 64.99537 * 8 5 4 43 43 H 1.09006 * 109.47139 * 305.00408 * 8 5 4 44 44 H 1.08999 * 110.42822 * 3.77969 * 10 9 8 45 45 H 1.08998 * 110.26076 * 241.65218 * 10 9 8 46 46 H 1.08996 * 112.51182 * 191.80129 * 13 11 10 47 47 H 1.08997 * 112.38940 * 64.31674 * 13 11 10 48 48 H 1.09001 * 110.31368 * 169.88956 * 16 14 9 49 49 H 1.09004 * 110.31496 * 47.71131 * 16 14 9 50 50 H 1.08999 * 109.47425 * 300.00630 * 20 18 17 51 51 H 1.08999 * 109.47324 * 60.00332 * 20 18 17 52 52 H 0.96994 * 120.00617 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5686 -0.7769 1.2178 6 1 3.9662 0.2289 1.0824 7 6 4.0227 -1.6653 0.0579 8 6 4.0852 -1.3562 2.5363 9 7 5.5529 -1.2992 2.5546 10 6 6.0234 0.0984 2.4537 11 6 6.9058 0.3229 3.7206 12 1 7.6242 1.1417 3.6815 13 6 7.4984 -1.1251 3.8930 14 6 6.0944 -1.8280 3.8463 15 1 6.0874 -2.9103 3.9757 16 6 5.3511 -0.9974 4.9380 17 7 5.9252 0.3620 4.8454 18 6 5.6203 1.4240 5.6173 19 8 6.1715 2.4879 5.4300 20 6 4.5947 1.2894 6.7131 21 16 4.4083 2.8763 7.5635 22 6 3.1867 2.4424 8.7568 23 1 2.7961 1.4361 8.7884 24 6 2.7272 3.3937 9.6571 25 7 1.8150 3.0695 10.5489 26 14 3.4035 5.1342 9.6030 27 1 2.5737 5.9595 8.6889 28 1 3.3703 5.7207 10.9669 29 1 4.8042 5.1060 9.1102 30 1 -0.3633 -1.0238 0.0885 31 1 -0.3633 0.5887 0.8424 32 1 -0.3632 0.4352 -0.9310 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6398 -1.7348 1.2726 38 1 1.7144 -0.1815 2.1387 39 1 5.1056 -1.7839 0.0934 40 1 3.5472 -2.6426 0.1409 41 1 3.7387 -1.2023 -0.8872 42 1 3.7606 -2.3926 2.6298 43 1 3.6885 -0.7748 3.3687 44 1 5.1774 0.7857 2.4550 45 1 6.6177 0.2323 1.5498 46 1 7.9979 -1.2601 4.8523 47 1 8.1353 -1.4152 3.0574 48 1 5.5356 -1.4198 5.9258 49 1 4.2813 -0.9714 4.7306 50 1 3.6383 0.9944 6.2814 51 1 4.9210 0.5314 7.4252 52 1 1.4937 3.7344 11.1778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318187975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -34.294852 kcal Electronic energy + Delta-G solvation = -28585.890708 eV Core-core repulsion = 24904.194184 eV Total energy + Delta-G solvation = -3681.696524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.34695 -39.84733 -38.59363 -35.59153 -34.72464 -33.77982 -31.79589 -30.79953 -30.09038 -28.07918 -27.90934 -27.55381 -26.33859 -25.75819 -22.99484 -21.72508 -21.46370 -20.38927 -20.00576 -19.24653 -18.31382 -17.75263 -17.22046 -17.12786 -16.45483 -16.33684 -16.02613 -15.99857 -15.21651 -14.93176 -14.87992 -14.72703 -14.54565 -14.17730 -13.97710 -13.68857 -13.57001 -13.51860 -13.38656 -13.26691 -13.07741 -13.05986 -12.83632 -12.70907 -12.61191 -12.37875 -12.26780 -12.17279 -12.12469 -12.00148 -11.90292 -11.84581 -11.35820 -11.21808 -11.16683 -11.10298 -11.07668 -10.61667 -9.81293 -9.25717 -9.07159 -8.56211 -6.28449 0.89322 1.27613 1.39945 1.43295 1.48394 1.92404 2.20863 2.61195 2.80544 2.81893 3.26066 3.41758 3.64618 3.67885 3.79566 3.90320 3.95466 4.02362 4.05212 4.12778 4.27352 4.27897 4.31146 4.42967 4.46409 4.48918 4.63970 4.70997 4.75981 4.76133 4.81135 4.82605 4.86435 4.91031 4.96161 4.99478 5.02233 5.05896 5.07740 5.15832 5.20694 5.22705 5.32986 5.36747 5.46721 5.53984 5.62084 5.65758 5.79875 6.00443 6.05695 6.30694 6.88458 6.97309 8.56361 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.003169 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.639568 B = 8833.205989 C =10534.248120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.108 4.108 5 C -0.087 4.087 6 H 0.061 0.939 7 C -0.130 4.130 8 C 0.042 3.958 9 N -0.499 5.499 10 C 0.034 3.966 11 C 0.097 3.903 12 H 0.114 0.886 13 C -0.118 4.118 14 C 0.067 3.933 15 H 0.166 0.834 16 C 0.048 3.952 17 N -0.617 5.617 18 C 0.549 3.451 19 O -0.563 6.563 20 C -0.101 4.101 21 S -0.171 6.171 22 C -0.531 4.531 23 H 0.060 0.940 24 C 0.048 3.952 25 N -0.915 5.915 26 Si 0.914 3.086 27 H -0.262 1.262 28 H -0.256 1.256 29 H -0.238 1.238 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.027 0.973 44 H 0.042 0.958 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.107 0.893 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -15.126 -23.842 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.146 4.146 5 C -0.106 4.106 6 H 0.079 0.921 7 C -0.187 4.187 8 C -0.086 4.086 9 N -0.222 5.222 10 C -0.095 4.095 11 C -0.006 4.006 12 H 0.132 0.868 13 C -0.157 4.157 14 C -0.041 4.041 15 H 0.184 0.816 16 C -0.075 4.075 17 N -0.352 5.352 18 C 0.337 3.663 19 O -0.441 6.441 20 C -0.252 4.252 21 S 0.056 5.944 22 C -0.678 4.678 23 H 0.078 0.922 24 C -0.158 4.158 25 N -0.553 5.553 26 Si 0.735 3.265 27 H -0.186 1.186 28 H -0.180 1.180 29 H -0.162 1.162 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.134 0.866 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.119 0.881 51 H 0.125 0.875 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.272 -13.768 -24.356 28.908 hybrid contribution -1.484 0.346 1.719 2.297 sum 5.788 -13.422 -22.637 26.946 Atomic orbital electron populations 1.21854 0.95214 1.01931 1.01588 1.21102 0.95622 0.95788 0.98575 1.21907 1.01025 0.96557 1.01271 1.21662 0.94870 1.00707 0.97411 1.21200 0.94792 0.99583 0.95006 0.92082 1.21677 1.01820 0.98754 0.96425 1.22523 0.87595 1.01782 0.96665 1.65007 1.09087 1.15889 1.32219 1.23548 0.98234 0.90013 0.97675 1.24356 0.90961 1.00024 0.85279 0.86760 1.23977 0.96242 0.91304 1.04130 1.24871 0.93429 1.00301 0.85486 0.81638 1.23618 0.99501 0.81822 1.02530 1.49212 1.42294 1.10239 1.33458 1.19596 0.82168 0.82927 0.81564 1.90678 1.54263 1.28240 1.70963 1.23171 1.01235 1.01778 0.98999 1.84679 1.54052 1.15572 1.40116 1.22416 1.25583 1.00600 1.19234 0.92175 1.25545 0.94046 1.02743 0.93419 1.70004 1.29243 1.36880 1.19147 0.85884 0.81540 0.79726 0.79325 1.18639 1.17979 1.16158 0.92082 0.93762 0.92235 0.90123 0.92673 0.92271 0.94220 0.91052 0.93848 0.91849 0.92631 0.93076 0.89194 0.95494 0.93948 0.87987 0.89513 0.86591 0.89987 0.90212 0.88134 0.87513 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.09 -1.39 2.78 -10.79 -0.03 -1.42 16 3 C -0.15 -2.59 8.91 71.98 0.64 -1.95 16 4 C -0.11 -1.73 4.17 30.60 0.13 -1.60 16 5 C -0.09 -1.34 2.07 -10.79 -0.02 -1.36 16 6 H 0.06 1.13 4.48 -2.39 -0.01 1.12 16 7 C -0.13 -1.66 8.79 71.98 0.63 -1.03 16 8 C 0.04 0.67 3.68 86.31 0.32 0.98 16 9 N -0.50 -7.35 4.70 -840.93 -3.95 -11.30 16 10 C 0.03 0.63 5.43 87.17 0.47 1.10 16 11 C 0.10 2.03 5.24 47.05 0.25 2.27 16 12 H 0.11 2.68 8.06 -2.39 -0.02 2.66 16 13 C -0.12 -1.59 6.83 33.58 0.23 -1.36 16 14 C 0.07 0.85 5.28 46.85 0.25 1.10 16 15 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 16 C 0.05 0.94 5.64 87.16 0.49 1.43 16 17 N -0.62 -16.49 2.95 -767.77 -2.26 -18.75 16 18 C 0.55 20.55 7.91 87.65 0.69 21.25 16 19 O -0.56 -25.42 16.21 -3.03 -0.05 -25.47 16 20 C -0.10 -4.10 5.44 71.23 0.39 -3.71 16 21 S -0.17 -8.92 18.55 -56.49 -1.05 -9.97 16 22 C -0.53 -31.53 10.04 67.95 0.68 -30.84 16 23 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 24 C 0.05 2.86 5.50 84.86 0.47 3.33 16 25 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 26 Si 0.91 45.49 27.74 68.60 1.90 47.39 16 27 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.08 6.62 -2.39 -0.02 1.06 16 34 H 0.05 0.96 6.36 -2.39 -0.02 0.94 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.86 7.61 -2.39 -0.02 0.85 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.05 0.63 6.82 -2.38 -0.02 0.61 16 42 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.03 0.55 5.49 -2.38 -0.01 0.53 16 44 H 0.04 1.00 6.47 -2.39 -0.02 0.98 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.63 5.21 -2.38 -0.01 1.62 16 50 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 51 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 52 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.46 405.68 1.98 -70.48 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.84 Total: 16.78 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 6.25 Total: -13.35 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -5.91 Total: -85.87 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -72.46 1.98 -70.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318187975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.185 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds