Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46987 * 2 1 4 4 C 1.53000 * 109.47747 * 119.99857 * 2 1 3 5 5 N 1.46892 * 109.47616 * 174.85229 * 4 2 1 6 6 C 1.46900 * 111.00165 * 199.25494 * 5 4 2 7 7 C 1.46901 * 111.00238 * 75.29815 * 5 4 2 8 8 C 1.52996 * 109.47124 * 190.00194 * 7 5 4 9 9 C 1.53950 * 113.57940 * 274.24196 * 8 7 5 10 10 C 1.53075 * 86.72489 * 220.69355 * 9 8 7 11 11 C 1.52908 * 121.17112 * 150.58787 * 10 9 8 12 12 C 1.53956 * 86.78409 * 100.75091 * 11 10 9 13 13 C 1.52909 * 121.06792 * 259.12302 * 10 9 8 14 14 C 1.52903 * 88.06878 * 24.83695 * 10 9 8 15 15 N 1.46498 * 109.47156 * 240.00156 * 2 1 3 16 16 C 1.34778 * 120.00049 * 82.26502 * 15 2 1 17 17 O 1.21281 * 120.00194 * 0.02562 * 16 15 2 18 18 C 1.50705 * 120.00097 * 180.27668 * 16 15 2 19 19 S 1.80998 * 109.47288 * 179.72455 * 18 16 15 20 20 C 1.76199 * 100.00087 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99760 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99965 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99692 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99930 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47377 * 89.99871 * 24 22 20 26 26 H 1.48503 * 109.46867 * 210.00121 * 24 22 20 27 27 H 1.48498 * 109.46932 * 329.99766 * 24 22 20 28 28 H 1.09003 * 109.46882 * 299.99623 * 1 2 3 29 29 H 1.08997 * 109.47260 * 59.99882 * 1 2 3 30 30 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46762 * 294.85690 * 4 2 1 32 32 H 1.09008 * 109.46771 * 54.84795 * 4 2 1 33 33 H 1.09006 * 109.46954 * 53.14945 * 6 5 4 34 34 H 1.08998 * 109.47172 * 173.14419 * 6 5 4 35 35 H 1.08993 * 109.47331 * 293.14750 * 6 5 4 36 36 H 1.08999 * 109.46994 * 310.00207 * 7 5 4 37 37 H 1.09003 * 109.46511 * 69.99874 * 7 5 4 38 38 H 1.08996 * 112.82561 * 45.33460 * 8 7 5 39 39 H 1.08999 * 113.66268 * 335.14246 * 9 8 7 40 40 H 1.08998 * 113.65994 * 106.19541 * 9 8 7 41 41 H 1.09004 * 113.66229 * 215.22151 * 11 10 9 42 42 H 1.09000 * 113.66775 * 346.27832 * 11 10 9 43 43 H 1.08996 * 113.57625 * 270.13181 * 12 11 10 44 44 H 1.08990 * 113.65110 * 139.34352 * 12 11 10 45 45 H 1.08998 * 113.65998 * 13.62899 * 13 10 9 46 46 H 1.08995 * 113.66243 * 144.68775 * 13 10 9 47 47 H 1.08997 * 113.66052 * 220.69629 * 14 10 9 48 48 H 1.09003 * 113.74933 * 89.65096 * 14 10 9 49 49 H 0.97002 * 120.00452 * 262.26962 * 15 2 1 50 50 H 1.08999 * 109.47160 * 299.72897 * 18 16 15 51 51 H 1.09004 * 109.46923 * 59.72491 * 18 16 15 52 52 H 0.96992 * 119.99566 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5038 -0.8297 1.1887 6 6 3.9918 -1.8790 2.0936 7 6 4.1401 0.4603 1.4867 8 6 5.6353 0.3759 1.1734 9 6 6.4769 -0.1856 2.3337 10 6 7.5146 0.8835 1.9824 11 6 8.4344 1.4750 3.0511 12 6 9.5235 0.5287 2.5139 13 6 8.7648 0.5343 1.1743 14 6 6.3818 1.7079 1.3699 15 7 2.0183 -0.6906 -1.1962 16 6 2.0948 -0.0328 -2.3700 17 8 1.7598 1.1310 -2.4360 18 6 2.5913 -0.7449 -3.6019 19 16 2.5697 0.3950 -5.0077 20 6 3.1804 -0.6682 -6.2731 21 1 3.4364 -1.6916 -6.0416 22 6 3.3324 -0.1905 -7.5675 23 7 3.7882 -0.9850 -8.5129 24 14 2.8902 1.5797 -7.9676 25 1 4.0823 2.4436 -7.7742 26 1 2.4373 1.6698 -9.3791 27 1 1.7992 2.0329 -7.0679 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7540 -0.1569 2.1367 32 1 1.6034 -1.7188 1.2966 33 1 3.4672 -2.8115 1.8851 34 1 5.0615 -2.0219 1.9408 35 1 3.8087 -1.5822 3.1262 36 1 3.6844 1.2399 0.8761 37 1 4.0027 0.6981 2.5415 38 1 5.8402 -0.1016 0.2152 39 1 6.0195 -0.0463 3.3133 40 1 6.8248 -1.2052 2.1683 41 1 8.6588 2.5309 2.8995 42 1 8.1226 1.2490 4.0708 43 1 9.5357 -0.4448 3.0040 44 1 10.5112 0.9861 2.4575 45 1 8.7167 -0.4433 0.6947 46 1 9.0819 1.3257 0.4952 47 1 6.6539 2.1988 0.4356 48 1 5.8969 2.3810 2.0769 49 1 2.2865 -1.6213 -1.1434 50 1 3.6097 -1.0950 -3.4336 51 1 1.9449 -1.5964 -3.8146 52 1 3.8940 -0.6513 -9.4174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322117870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -1.622507 kcal Electronic energy + Delta-G solvation = -27766.038137 eV Core-core repulsion = 24085.758392 eV Total energy + Delta-G solvation = -3680.279745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81149 -39.45479 -37.87051 -35.52987 -34.18916 -32.38938 -31.39808 -28.56903 -28.30880 -27.41326 -26.01237 -25.88474 -25.55769 -23.95264 -22.39888 -21.15552 -20.39192 -19.96223 -18.15232 -17.79889 -16.53445 -16.37812 -15.98151 -15.66639 -15.54057 -15.34520 -14.92862 -14.75292 -14.60977 -14.20080 -13.90576 -13.32827 -13.24897 -13.10868 -12.94390 -12.76574 -12.73901 -12.61670 -12.29505 -12.28469 -12.13809 -11.96773 -11.86504 -11.70445 -11.46340 -11.21300 -11.09341 -10.97709 -10.95570 -10.63862 -10.52163 -10.36035 -10.24518 -9.86215 -9.80857 -9.35163 -8.95883 -8.76217 -8.56133 -8.42502 -6.84618 -6.24258 -3.94691 2.86996 3.15225 3.35924 3.40452 3.54474 3.60160 3.82141 4.16324 4.17501 4.37374 4.37717 4.46345 4.55840 4.57796 4.69677 4.81697 4.90847 5.04358 5.09894 5.14846 5.16859 5.17699 5.23050 5.30431 5.31387 5.40850 5.44047 5.45431 5.47580 5.49825 5.52840 5.56352 5.63551 5.65835 5.67216 5.72383 5.75859 5.82295 5.88510 5.89475 6.01818 6.11702 6.13135 6.17825 6.26197 6.33537 6.71491 6.83325 6.89464 7.85940 7.99224 8.46972 8.69243 9.22339 10.85158 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.002807 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.957219 B = 9973.901789 C =11971.712119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.082 0.918 4 C 0.045 3.955 5 N -0.535 5.535 6 C 0.022 3.978 7 C 0.065 3.935 8 C -0.098 4.098 9 C -0.110 4.110 10 C -0.105 4.105 11 C -0.128 4.128 12 C -0.140 4.140 13 C -0.117 4.117 14 C -0.123 4.123 15 N -0.714 5.714 16 C 0.533 3.467 17 O -0.527 6.527 18 C -0.122 4.122 19 S -0.144 6.144 20 C -0.519 4.519 21 H 0.087 0.913 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.400 0.600 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -0.366 28.289 28.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.083 4.083 5 N -0.258 5.258 6 C -0.126 4.126 7 C -0.063 4.063 8 C -0.117 4.117 9 C -0.148 4.148 10 C -0.105 4.105 11 C -0.166 4.166 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.161 4.161 15 N -0.368 5.368 16 C 0.319 3.681 17 O -0.403 6.403 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.105 0.895 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.235 0.765 50 H 0.114 0.886 51 H 0.112 0.888 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.533 1.406 27.524 27.786 hybrid contribution 0.243 -0.981 0.511 1.132 sum 3.775 0.426 28.035 28.292 Atomic orbital electron populations 1.22170 0.95332 1.02103 1.02694 1.20811 0.93301 0.97359 0.84019 0.89952 1.22466 0.88118 1.01123 0.96595 1.61913 1.04896 1.06464 1.52574 1.22519 1.01897 0.94682 0.93530 1.22180 0.94465 0.91148 0.98464 1.22485 0.92549 0.97191 0.99432 1.22869 0.95916 0.97610 0.98366 1.22433 0.92724 0.97858 0.97465 1.22748 0.96555 0.99166 0.98112 1.22812 0.97767 0.99891 0.97289 1.22648 0.94558 1.02034 0.96202 1.22811 0.96201 0.96153 1.00971 1.45758 1.67727 1.15404 1.07870 1.20188 0.77069 0.86944 0.83945 1.90676 1.47974 1.16565 1.85060 1.23258 1.04476 1.03244 0.96265 1.84746 1.86649 1.18955 1.01389 1.22337 1.49661 1.00109 0.94543 0.89453 1.24717 0.93512 0.98106 0.95039 1.69944 1.43955 1.35976 1.02038 0.86731 0.81179 0.84785 0.79138 1.19252 1.20045 1.15906 0.92133 0.91343 0.92502 0.93443 0.90302 0.91716 0.90643 0.96020 0.90428 0.94966 0.88220 0.90363 0.91390 0.90136 0.91765 0.90436 0.91662 0.91277 0.89792 0.91083 0.90221 0.76546 0.88636 0.88775 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.45 37.15 0.35 -1.38 16 2 C 0.15 1.69 2.54 -67.93 -0.17 1.52 16 3 H 0.08 1.10 6.46 -51.93 -0.34 0.77 16 4 C 0.05 0.38 4.54 -3.83 -0.02 0.36 16 5 N -0.54 -4.78 4.42 -242.92 -1.07 -5.86 16 6 C 0.02 0.16 8.87 60.06 0.53 0.69 16 7 C 0.07 0.60 4.70 -3.83 -0.02 0.58 16 8 C -0.10 -0.90 3.49 -89.64 -0.31 -1.21 16 9 C -0.11 -0.85 5.64 -26.20 -0.15 -1.00 16 10 C -0.10 -0.85 1.11 -154.63 -0.17 -1.02 16 11 C -0.13 -0.94 7.84 -26.28 -0.21 -1.15 16 12 C -0.14 -1.01 8.08 -25.74 -0.21 -1.22 16 13 C -0.12 -0.97 7.84 -26.28 -0.21 -1.18 16 14 C -0.12 -1.11 7.40 -26.28 -0.19 -1.30 16 15 N -0.71 -9.37 4.83 -53.81 -0.26 -9.63 16 16 C 0.53 9.61 7.78 -10.98 -0.09 9.53 16 17 O -0.53 -11.43 15.48 5.56 0.09 -11.35 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 20 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 24 Si 0.86 22.10 27.74 -169.99 -4.72 17.38 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.36 8.01 -51.93 -0.42 -0.05 16 32 H 0.08 0.58 7.79 -51.92 -0.40 0.17 16 33 H 0.06 0.43 7.91 -51.93 -0.41 0.02 16 34 H 0.07 0.56 5.50 -51.93 -0.29 0.28 16 35 H 0.02 0.15 8.11 -51.93 -0.42 -0.27 16 36 H 0.08 0.86 6.69 -51.93 -0.35 0.51 16 37 H 0.03 0.28 7.83 -51.93 -0.41 -0.13 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 40 H 0.07 0.52 7.28 -51.93 -0.38 0.14 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.40 4.47 8.58 -40.82 -0.35 4.12 16 50 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 51 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 52 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 419.18 15.07 6.32 6.32 Total: -1.00 -33.02 419.18 -10.94 -43.96 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -9.66 Total: 2.17 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.42 Total: -11.11 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.56 Total: -41.67 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.72 Total: 17.38 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.02 -10.94 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322117870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.336 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds