Wall clock time and date at job start Sat Apr 11 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 119.99692 * 2 1 4 4 O 1.21285 * 119.99706 * 180.02562 * 3 2 1 5 5 C 1.50690 * 119.99904 * 359.97438 * 3 2 1 6 6 S 1.81001 * 109.47106 * 179.97438 * 5 3 2 7 7 C 1.76200 * 100.00261 * 180.02562 * 6 5 3 8 8 H 1.07998 * 120.00177 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00171 * 180.02562 * 7 6 5 10 10 N 1.31637 * 120.00144 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00248 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46996 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47209 * 119.99560 * 11 9 7 14 14 H 1.48503 * 109.47337 * 239.99886 * 11 9 7 15 15 C 1.46502 * 120.00351 * 179.97438 * 2 1 3 16 16 C 1.53513 * 114.16896 * 300.00473 * 15 2 1 17 17 N 1.47473 * 87.93506 * 87.80957 * 16 15 2 18 18 C 1.46897 * 111.00081 * 138.70157 * 17 16 15 19 19 C 1.53005 * 109.47308 * 169.99776 * 18 17 16 20 20 C 1.50476 * 108.87573 * 174.99874 * 19 18 17 21 21 C 1.54245 * 108.51856 * 214.83311 * 20 19 18 22 22 C 1.45542 * 112.40792 * 280.00900 * 21 20 19 23 23 C 1.54245 * 112.32700 * 61.98392 * 22 21 20 24 24 C 1.50546 * 108.48390 * 279.88442 * 23 22 21 25 25 C 1.54056 * 108.79964 * 297.92944 * 19 18 17 26 26 C 1.47484 * 87.83790 * 27.00690 * 17 16 15 27 27 H 1.09002 * 109.47179 * 269.99958 * 1 2 3 28 28 H 1.08997 * 109.47249 * 30.00278 * 1 2 3 29 29 H 1.09007 * 109.46841 * 150.00077 * 1 2 3 30 30 H 1.08996 * 109.47785 * 299.99673 * 5 3 2 31 31 H 1.08998 * 109.47617 * 60.00312 * 5 3 2 32 32 H 0.96998 * 120.00694 * 180.02562 * 10 9 7 33 33 H 1.08996 * 113.25426 * 167.04859 * 15 2 1 34 34 H 1.09002 * 113.47871 * 333.04052 * 16 15 2 35 35 H 1.09003 * 113.52843 * 202.58427 * 16 15 2 36 36 H 1.09004 * 109.47359 * 49.99920 * 18 17 16 37 37 H 1.08996 * 109.47414 * 289.99716 * 18 17 16 38 38 H 1.09005 * 108.84758 * 56.44250 * 19 18 17 39 39 H 1.09002 * 109.62685 * 95.12861 * 20 19 18 40 40 H 1.08995 * 109.63266 * 334.54454 * 20 19 18 41 41 H 1.08997 * 108.89530 * 159.25760 * 21 20 19 42 42 H 1.09002 * 108.89487 * 40.76592 * 21 20 19 43 43 H 1.09002 * 108.89596 * 182.69054 * 22 21 20 44 44 H 1.09003 * 108.89788 * 301.28088 * 22 21 20 45 45 H 1.09000 * 109.62486 * 39.68278 * 23 22 21 46 46 H 1.08999 * 109.63051 * 160.25691 * 23 22 21 47 47 H 1.09000 * 108.92627 * 333.51136 * 24 23 22 48 48 H 1.09003 * 108.91864 * 215.01792 * 24 23 22 49 49 H 1.09000 * 108.81295 * 318.41635 * 25 19 18 50 50 H 1.08999 * 108.81700 * 76.69765 * 25 19 18 51 51 H 1.09005 * 113.47002 * 87.75700 * 26 17 16 52 52 H 1.08989 * 113.47866 * 218.22132 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4722 -0.0006 6 16 2.5614 3.8481 0.0003 7 6 1.4413 5.2082 0.0002 8 1 0.3760 5.0305 -0.0007 9 6 1.9279 6.5081 0.0003 10 7 3.2263 6.7248 0.0009 11 14 0.7405 7.9500 -0.0005 12 1 -0.6550 7.4421 -0.0018 13 1 0.9655 8.7773 1.2120 14 1 0.9668 8.7770 -1.2130 15 6 2.1976 -1.2687 0.0006 16 6 1.9053 -2.1627 1.2138 17 7 0.7753 -2.7311 0.4556 18 6 0.6943 -4.1858 0.6430 19 6 -0.6196 -4.7035 0.0541 20 6 -0.6341 -6.2056 0.1421 21 6 -1.3677 -6.7618 -1.0955 22 6 -2.8151 -6.6942 -0.9594 23 6 -3.3231 -5.2449 -0.8158 24 6 -3.1229 -4.8081 0.6109 25 6 -1.7932 -4.0570 0.8143 26 6 1.5089 -2.3973 -0.7796 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5139 30 1 0.7590 2.5299 -0.8908 31 1 0.7583 2.5302 0.8891 32 1 3.5665 7.6331 0.0013 33 1 3.2579 -1.1534 -0.2239 34 1 1.5980 -1.6062 2.0993 35 1 2.6949 -2.8845 1.4227 36 1 0.7316 -4.4177 1.7074 37 1 1.5327 -4.6646 0.1372 38 1 -0.6748 -4.4111 -0.9946 39 1 -1.1573 -6.5142 1.0472 40 1 0.3889 -6.5812 0.1609 41 1 -1.0751 -7.8016 -1.2415 42 1 -1.0682 -6.1864 -1.9715 43 1 -3.2739 -7.1435 -1.8402 44 1 -3.1137 -7.2618 -0.0780 45 1 -2.7603 -4.5919 -1.4829 46 1 -4.3833 -5.2020 -1.0656 47 1 -3.1331 -5.6876 1.2546 48 1 -3.9455 -4.1533 0.8987 49 1 -1.5572 -4.0420 1.8783 50 1 -1.9131 -3.0302 0.4686 51 1 2.1931 -3.1816 -1.1035 52 1 0.8656 -2.0398 -1.5834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323887439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:16 Heat of formation + Delta-G solvation = -30.702222 kcal Electronic energy + Delta-G solvation = -27749.332686 eV Core-core repulsion = 24067.791950 eV Total energy + Delta-G solvation = -3681.540736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92010 -40.24828 -39.43660 -36.04156 -34.58246 -34.24499 -33.08256 -31.21227 -29.42083 -27.85855 -27.66015 -26.95402 -25.87150 -25.40270 -23.09952 -21.94466 -21.36777 -19.95662 -19.83864 -19.39143 -18.25856 -17.29451 -16.91787 -16.87829 -16.71145 -16.36774 -16.32174 -15.88004 -15.44586 -15.11130 -14.98735 -14.64972 -14.52553 -14.46694 -14.11310 -13.81914 -13.57691 -13.50400 -13.20047 -13.14325 -13.04146 -12.98356 -12.91433 -12.90913 -12.58967 -12.55489 -12.04559 -11.87851 -11.69030 -11.55780 -11.46856 -11.24092 -11.15577 -11.11835 -11.00876 -10.98236 -10.84927 -10.26576 -9.81537 -9.63323 -8.67051 -8.34546 -6.12711 1.25221 1.41626 1.45511 1.54072 1.57531 2.07726 2.27445 2.98216 2.99496 3.26800 3.49002 3.67908 3.76808 3.79747 3.86335 3.95912 4.10722 4.20317 4.22894 4.31560 4.38127 4.42037 4.43262 4.46570 4.49721 4.55536 4.57129 4.64424 4.65456 4.72720 4.79432 4.84176 4.86450 4.91003 4.98424 5.05783 5.12903 5.22110 5.29198 5.32979 5.36000 5.39766 5.42374 5.42415 5.50900 5.53351 5.62427 5.65268 5.70785 6.07142 6.20346 6.31429 7.06719 7.13538 8.74946 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002002 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.759818 B =13979.818060 C =14928.660329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.584 5.584 3 C 0.533 3.467 4 O -0.565 6.565 5 C -0.122 4.122 6 S -0.151 6.151 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.012 3.988 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.257 1.257 13 H -0.274 1.274 14 H -0.273 1.273 15 C 0.101 3.899 16 C -0.005 4.005 17 N -0.464 5.464 18 C 0.022 3.978 19 C -0.067 4.067 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.095 4.095 26 C 0.003 3.997 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.055 0.945 51 H 0.098 0.902 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -30.497 -0.515 33.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.317 5.317 3 C 0.321 3.679 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.076 5.924 7 C -0.692 4.692 8 H 0.100 0.900 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.180 1.180 13 H -0.199 1.199 14 H -0.199 1.199 15 C -0.004 4.004 16 C -0.135 4.135 17 N -0.187 5.187 18 C -0.107 4.107 19 C -0.086 4.086 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.133 4.133 26 C -0.127 4.127 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.115 0.885 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.597 -30.194 -0.393 32.719 hybrid contribution -0.780 0.721 0.042 1.063 sum -13.377 -29.473 -0.351 32.369 Atomic orbital electron populations 1.21944 0.76935 1.04039 1.02832 1.47363 1.08135 1.03578 1.72591 1.20138 0.87249 0.85341 0.75144 1.90668 1.15582 1.87465 1.50654 1.23353 1.02680 0.94943 1.06280 1.85552 1.12606 0.97220 1.97014 1.23220 0.94612 0.92623 1.58744 0.89968 1.26141 0.97632 1.01696 0.93765 1.70191 1.14078 1.22419 1.48076 0.84897 0.78176 0.76724 0.78093 1.18016 1.19919 1.19879 1.22111 0.96811 0.83062 0.98407 1.24213 0.94159 0.97330 0.97809 1.68953 1.33072 1.12826 1.03814 1.22973 0.97940 0.88278 1.01481 1.20781 0.93453 0.94671 0.99684 1.21372 1.00542 0.94455 0.98467 1.20448 0.95710 1.01144 0.97977 1.20484 0.96353 0.96649 1.01917 1.21338 1.00667 0.96466 0.96930 1.21369 0.97162 1.00099 0.96935 1.21742 0.93200 0.98974 0.99343 1.24291 0.96793 0.96248 0.95323 0.92111 0.91223 0.88149 0.87438 0.87728 0.91991 0.88956 0.90561 0.88929 0.90953 0.92730 0.91884 0.91713 0.91528 0.91994 0.92557 0.92281 0.92205 0.92148 0.92086 0.92271 0.92791 0.93272 0.92589 0.88456 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.79 9.34 127.77 1.19 2.98 16 2 N -0.58 -16.35 3.11 -821.59 -2.56 -18.91 16 3 C 0.53 20.70 7.69 87.65 0.67 21.37 16 4 O -0.57 -26.84 15.37 -3.05 -0.05 -26.89 16 5 C -0.12 -5.01 4.71 71.23 0.34 -4.68 16 6 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 7 C -0.54 -31.41 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.71 5.49 84.86 0.47 1.17 16 10 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 11 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 C 0.10 2.36 4.66 45.45 0.21 2.57 16 16 C -0.01 -0.09 7.31 83.58 0.61 0.52 16 17 N -0.46 -7.13 4.52 -927.91 -4.19 -11.32 16 18 C 0.02 0.26 3.93 86.31 0.34 0.60 16 19 C -0.07 -0.76 1.91 -11.25 -0.02 -0.78 16 20 C -0.11 -1.07 5.13 30.20 0.15 -0.91 16 21 C -0.12 -1.09 5.26 28.74 0.15 -0.94 16 22 C -0.12 -1.13 5.27 28.74 0.15 -0.98 16 23 C -0.12 -1.28 5.61 30.22 0.17 -1.11 16 24 C -0.12 -1.38 5.32 30.16 0.16 -1.22 16 25 C -0.09 -1.23 4.88 31.31 0.15 -1.08 16 26 C 0.00 0.05 6.73 83.58 0.56 0.61 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.47 6.44 -2.39 -0.02 1.46 16 29 H 0.10 1.77 5.70 -2.38 -0.01 1.76 16 30 H 0.11 4.03 7.40 -2.40 -0.02 4.01 16 31 H 0.10 3.97 8.11 -2.40 -0.02 3.96 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 33 H 0.09 2.55 7.28 -2.39 -0.02 2.53 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 36 H 0.07 0.90 8.01 -2.38 -0.02 0.88 16 37 H 0.05 0.58 7.11 -2.39 -0.02 0.57 16 38 H 0.06 0.82 6.63 -2.38 -0.02 0.80 16 39 H 0.06 0.66 6.98 -2.39 -0.02 0.64 16 40 H 0.07 0.59 7.59 -2.39 -0.02 0.57 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.58 7.47 -2.39 -0.02 0.56 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.57 7.46 -2.39 -0.02 0.55 16 45 H 0.06 0.74 6.97 -2.39 -0.02 0.73 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.67 6.63 -2.39 -0.02 0.65 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.05 0.70 7.92 -2.39 -0.02 0.68 16 50 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 51 H 0.10 1.23 7.42 -2.38 -0.02 1.21 16 52 H 0.09 1.48 7.27 -2.39 -0.02 1.46 16 Total: -1.00 -73.00 403.78 1.19 -71.81 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.96 Total: -12.65 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -6.46 Total: -86.29 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -73.00 1.19 -71.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323887439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -73.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds