Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00230 * 2 1 4 4 C 1.53002 * 109.46691 * 125.00174 * 3 2 1 5 5 C 1.53001 * 109.46736 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47128 * 304.99899 * 5 4 3 7 7 C 1.53002 * 109.47184 * 184.99979 * 5 4 3 8 8 N 1.46899 * 109.47550 * 65.00280 * 5 4 3 9 9 C 1.46898 * 111.00290 * 205.00045 * 8 5 4 10 10 C 1.53004 * 109.47102 * 179.97438 * 9 8 5 11 11 C 1.52995 * 110.29246 * 60.67888 * 10 9 8 12 12 C 1.54620 * 110.32598 * 182.92862 * 10 9 8 13 13 C 1.54942 * 102.84217 * 140.73797 * 12 10 9 14 14 N 1.48113 * 103.25098 * 322.62061 * 13 12 10 15 15 C 1.34781 * 127.02791 * 219.55349 * 14 13 12 16 16 O 1.21288 * 119.99677 * 179.68848 * 15 14 13 17 17 C 1.50699 * 120.00343 * 359.68155 * 15 14 13 18 18 S 1.80993 * 109.47142 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99928 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00209 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46885 * 59.99957 * 23 21 19 25 25 H 1.48493 * 109.47325 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47005 * 300.00217 * 23 21 19 27 27 C 1.47486 * 105.93573 * 39.29221 * 14 13 12 28 28 H 1.07999 * 120.00218 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99859 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99561 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47122 * 5.00712 * 3 2 1 32 32 H 1.08997 * 109.47578 * 245.00284 * 3 2 1 33 33 H 1.08991 * 109.47450 * 60.00310 * 4 3 2 34 34 H 1.09006 * 109.46982 * 300.00120 * 4 3 2 35 35 H 1.09001 * 109.46821 * 59.99814 * 7 5 4 36 36 H 1.08994 * 109.47636 * 180.02562 * 7 5 4 37 37 H 1.09010 * 109.46985 * 300.00125 * 7 5 4 38 38 H 1.00903 * 111.00516 * 81.03874 * 8 5 4 39 39 H 1.09005 * 109.47100 * 59.99602 * 9 8 5 40 40 H 1.08996 * 109.46758 * 299.99739 * 9 8 5 41 41 H 1.08998 * 109.47270 * 299.31679 * 11 10 9 42 42 H 1.08994 * 109.47285 * 59.31961 * 11 10 9 43 43 H 1.09001 * 109.46934 * 179.32070 * 11 10 9 44 44 H 1.09002 * 110.73166 * 259.07796 * 12 10 9 45 45 H 1.08999 * 110.74254 * 22.21331 * 12 10 9 46 46 H 1.08997 * 110.66229 * 204.17862 * 13 12 10 47 47 H 1.08998 * 110.65593 * 81.06389 * 13 12 10 48 48 H 1.09001 * 109.47046 * 300.00464 * 17 15 14 49 49 H 1.09008 * 109.46600 * 60.00211 * 17 15 14 50 50 H 0.96997 * 120.00213 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.91088 * 93.91448 * 27 14 13 52 52 H 1.08998 * 109.91112 * 215.18998 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6581 1.1820 6 1 4.2857 2.7975 0.2164 7 6 4.8578 2.6362 2.2870 8 7 2.8631 3.7639 1.4229 9 6 3.3793 5.0217 0.8668 10 6 2.3784 6.1472 1.1362 11 6 2.1766 6.3286 2.6419 12 6 2.8679 7.4662 0.4949 13 6 1.5595 8.0880 -0.0550 14 7 0.8027 6.9115 -0.5414 15 6 0.0592 6.8316 -1.6628 16 8 -0.5060 5.7957 -1.9431 17 6 -0.0699 8.0293 -2.5682 18 16 -1.1234 7.6086 -3.9786 19 6 -1.1014 9.1426 -4.8451 20 1 -0.5402 9.9771 -4.4516 21 6 -1.8063 9.2788 -6.0330 22 7 -2.4917 8.2621 -6.5120 23 14 -1.7837 10.9053 -6.9515 24 1 -0.3864 11.2448 -7.3225 25 1 -2.6080 10.7909 -8.1813 26 1 -2.3380 11.9730 -6.0809 27 6 1.0341 5.8434 0.4490 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3587 2.1316 0.0897 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2353 2.1130 35 1 5.5528 1.8157 2.1083 36 1 5.4022 3.5804 2.2877 37 1 4.3717 2.4968 3.2528 38 1 2.6617 3.8593 2.4071 39 1 3.5217 4.9122 -0.2084 40 1 4.3327 5.2626 1.3369 41 1 1.7834 5.4063 3.0695 42 1 3.1312 6.5681 3.1102 43 1 1.4712 7.1405 2.8187 44 1 3.3187 8.1160 1.2450 45 1 3.5719 7.2649 -0.3125 46 1 1.7743 8.7731 -0.8750 47 1 1.0122 8.5963 0.7389 48 1 -0.5153 8.8564 -2.0154 49 1 0.9171 8.3216 -2.9269 50 1 -2.9840 8.3571 -7.3423 51 1 0.2319 5.8413 1.1870 52 1 1.0834 4.8768 -0.0522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324695772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -52.432895 kcal Electronic energy + Delta-G solvation = -27685.013117 eV Core-core repulsion = 24002.530068 eV Total energy + Delta-G solvation = -3682.483049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24244 -39.48517 -38.22099 -35.97013 -34.59721 -34.42221 -31.83439 -30.92084 -30.21296 -29.42739 -27.76843 -27.26312 -26.08028 -24.62490 -23.58610 -21.57094 -20.75446 -20.55001 -20.01211 -19.45690 -18.03541 -17.19362 -16.89070 -16.75991 -16.60600 -16.33398 -15.90530 -15.86478 -15.59102 -15.07745 -14.70828 -14.61516 -14.46078 -14.17872 -14.05936 -13.84871 -13.55808 -13.49509 -13.38577 -13.18550 -13.08888 -12.87594 -12.85361 -12.75225 -12.63297 -12.46908 -12.44859 -11.94657 -11.87375 -11.73955 -11.68677 -11.55210 -11.45250 -11.24406 -11.13508 -10.92668 -10.29226 -10.17822 -9.70978 -9.19031 -8.69285 -8.34907 -6.14254 1.23638 1.42910 1.43809 1.44655 1.54995 1.58506 2.12542 2.27034 2.98842 3.15986 3.27000 3.56769 3.65169 3.80230 3.86668 3.93161 4.13696 4.18686 4.22879 4.29553 4.31935 4.38897 4.41362 4.42803 4.46083 4.59953 4.67917 4.68749 4.71564 4.78393 4.83094 4.89226 4.92132 4.96419 5.03460 5.06895 5.07925 5.13613 5.21103 5.25505 5.31033 5.32854 5.35649 5.40300 5.45096 5.55154 5.78093 5.96636 6.18535 6.18868 6.47014 6.61159 7.05532 7.14776 8.74285 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.002469 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.100774 B =11339.856476 C =12930.945700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.088 4.088 4 C -0.091 4.091 5 C 0.084 3.916 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.691 5.691 9 C 0.081 3.919 10 C -0.061 4.061 11 C -0.134 4.134 12 C -0.116 4.116 13 C 0.090 3.910 14 N -0.622 5.622 15 C 0.546 3.454 16 O -0.570 6.570 17 C -0.117 4.117 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.261 1.261 27 C 0.122 3.878 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.347 0.653 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.271 0.729 51 H 0.059 0.941 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.468 -6.672 24.003 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.173 4.173 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.026 4.026 6 H 0.084 0.916 7 C -0.232 4.232 8 N -0.324 5.324 9 C -0.048 4.048 10 C -0.062 4.062 11 C -0.191 4.191 12 C -0.155 4.155 13 C -0.032 4.032 14 N -0.356 5.356 15 C 0.334 3.666 16 O -0.449 6.449 17 C -0.269 4.269 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.185 1.185 27 C 0.000 4.000 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.168 0.832 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.082 -8.418 22.846 29.742 hybrid contribution 0.682 1.842 -0.176 1.972 sum 17.764 -6.577 22.670 29.542 Atomic orbital electron populations 1.23962 0.96576 1.01762 1.02200 1.23179 0.95983 0.99128 0.99003 1.20647 0.98539 0.94759 0.98606 1.21443 0.97397 0.96377 0.97697 1.21565 0.91338 0.91139 0.98567 0.91632 1.22403 0.99349 1.02398 0.99048 1.60510 1.45776 1.04034 1.22107 1.21903 0.95512 0.88361 0.99039 1.21448 0.92850 0.95049 0.96861 1.21851 1.02975 1.02420 0.91859 1.22828 0.95841 0.95636 1.01186 1.22875 0.92354 0.87963 0.99976 1.48824 1.48878 1.16184 1.21725 1.19775 0.77802 0.88536 0.80505 1.90688 1.47905 1.32762 1.73572 1.23282 1.04833 0.99440 0.99299 1.85627 1.63514 1.21177 1.22232 1.23151 1.36930 0.98268 1.11017 0.89886 1.26170 0.93731 1.02017 0.97308 1.70187 1.30396 1.33030 1.21230 0.84977 0.78916 0.76746 0.77181 1.18556 1.20356 1.18543 1.22126 0.97252 0.90746 0.89881 0.87536 0.90057 0.86128 0.92463 0.92569 0.90759 0.91834 0.91582 0.92491 0.91815 0.83202 0.93168 0.92955 0.91893 0.90371 0.91915 0.86714 0.90969 0.89687 0.89011 0.87664 0.87683 0.91959 0.92228 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.53 14.32 67.78 0.97 -3.56 16 2 C -0.16 -3.09 9.52 25.64 0.24 -2.84 16 3 C -0.09 -1.82 5.55 29.85 0.17 -1.65 16 4 C -0.09 -1.33 4.87 30.60 0.15 -1.19 16 5 C 0.08 1.13 2.59 44.92 0.12 1.25 16 6 H 0.07 1.05 7.80 -2.39 -0.02 1.03 16 7 C -0.17 -1.60 9.16 71.98 0.66 -0.94 16 8 N -0.69 -10.19 5.12 -491.57 -2.51 -12.71 16 9 C 0.08 1.20 4.19 86.30 0.36 1.56 16 10 C -0.06 -0.91 0.76 -51.29 -0.04 -0.95 16 11 C -0.13 -1.31 7.88 71.98 0.57 -0.74 16 12 C -0.12 -1.57 6.17 31.81 0.20 -1.37 16 13 C 0.09 1.73 6.95 86.73 0.60 2.33 16 14 N -0.62 -18.44 3.29 -809.40 -2.66 -21.10 16 15 C 0.55 22.57 7.91 87.66 0.69 23.26 16 16 O -0.57 -29.24 16.20 -3.06 -0.05 -29.29 16 17 C -0.12 -5.01 5.09 71.24 0.36 -4.64 16 18 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 19 C -0.55 -31.86 9.50 67.95 0.65 -31.22 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.72 5.49 84.86 0.47 1.18 16 22 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 23 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 27 C 0.12 3.07 6.06 86.53 0.52 3.60 16 28 H 0.11 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.08 2.04 7.84 -2.91 -0.02 2.01 16 30 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.06 1.48 7.40 -2.39 -0.02 1.46 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.50 7.45 -2.39 -0.02 0.49 16 37 H 0.06 0.52 8.13 -2.38 -0.02 0.50 16 38 H 0.35 4.14 6.63 -89.69 -0.59 3.54 16 39 H 0.05 1.00 8.05 -2.38 -0.02 0.98 16 40 H 0.05 0.58 7.43 -2.39 -0.02 0.57 16 41 H 0.06 0.62 6.69 -2.39 -0.02 0.61 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.11 0.86 7.86 -2.39 -0.02 0.84 16 45 H 0.07 1.07 7.86 -2.39 -0.02 1.05 16 46 H 0.08 1.62 7.23 -2.39 -0.02 1.60 16 47 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 49 H 0.10 4.07 7.90 -2.39 -0.02 4.05 16 50 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 51 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 52 H 0.06 1.86 7.32 -2.39 -0.02 1.85 16 Total: -1.00 -78.73 425.91 2.88 -75.85 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.27 Total: 23.91 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 6.69 Total: -15.93 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.89 Total: -90.65 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -78.73 2.88 -75.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324695772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.417 kcal (2) G-P(sol) polarization free energy of solvation -78.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds