Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 5 5 C 1.34769 * 120.00011 * 275.00046 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.53004 * 109.46855 * 240.00522 * 2 1 3 23 23 C 1.53000 * 109.47361 * 180.02562 * 22 2 1 24 24 C 1.52996 * 109.47164 * 179.97438 * 23 22 2 25 25 C 1.53009 * 109.47143 * 60.00144 * 24 23 22 26 26 F 1.39894 * 109.47058 * 59.99696 * 25 24 23 27 27 C 1.52998 * 109.46639 * 299.99802 * 25 24 23 28 28 C 1.53000 * 109.47204 * 59.99497 * 22 2 1 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 31 31 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 32 32 H 0.97004 * 120.00150 * 94.99368 * 4 2 1 33 33 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 34 34 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 35 35 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 36 36 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 37 37 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 38 38 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 40 40 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 41 41 H 1.09008 * 109.47085 * 299.99968 * 22 2 1 42 42 H 1.09001 * 109.46847 * 299.99624 * 23 22 2 43 43 H 1.09002 * 109.46871 * 59.99900 * 23 22 2 44 44 H 1.08994 * 109.47428 * 300.00131 * 24 23 22 45 45 H 1.09002 * 109.46953 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46904 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47154 * 299.99975 * 27 25 24 48 48 H 1.09007 * 109.47196 * 179.97438 * 27 25 24 49 49 H 1.09003 * 109.47395 * 300.00204 * 28 22 2 50 50 H 1.08994 * 109.46742 * 60.00353 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8590 1.1591 2.4115 7 6 2.6450 -0.7231 3.5774 8 8 3.0205 -1.8746 3.5023 9 7 2.6769 -0.0797 4.7611 10 6 3.2665 -0.7313 5.9333 11 6 3.0698 0.1570 7.1635 12 6 3.7929 1.4789 7.1329 13 1 3.2802 2.3671 6.7943 14 6 5.1071 1.5554 7.5426 15 7 5.7023 0.4954 8.0444 16 14 6.0424 3.1647 7.3850 17 1 5.8689 3.9617 8.6260 18 1 7.4850 2.8805 7.1769 19 1 5.5169 3.9313 6.2267 20 6 1.7060 0.1136 7.8554 21 6 2.9224 -0.5364 8.5193 22 6 2.0399 -0.7212 -1.2494 23 6 3.5699 -0.7218 -1.2492 24 6 4.0798 -1.4435 -2.4981 25 6 3.5702 -0.7222 -3.7477 26 9 4.0371 0.5965 -3.7478 27 6 2.0403 -0.7217 -3.7478 28 6 1.5298 0.0001 -2.4985 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 2.2491 -1.6319 1.1525 33 1 2.3095 0.8148 4.8371 34 1 4.3320 -0.8876 5.7647 35 1 2.7798 -1.6926 6.0978 36 1 6.6022 0.5669 8.3993 37 1 1.3316 1.0412 8.2886 38 1 0.9489 -0.5482 7.4346 39 1 2.9651 -1.6255 8.5350 40 1 3.3487 -0.0367 9.3892 41 1 1.6765 -1.7489 -1.2494 42 1 3.9336 0.3058 -1.2489 43 1 3.9329 -1.2360 -0.3592 44 1 3.7160 -2.4709 -2.4980 45 1 5.1698 -1.4435 -2.4982 46 1 3.9331 -1.2367 -4.6375 47 1 1.6765 -1.7492 -3.7477 48 1 1.6772 -0.2075 -4.6378 49 1 0.4397 0.0001 -2.4985 50 1 1.8931 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328110886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -125.337210 kcal Electronic energy + Delta-G solvation = -30149.909523 eV Core-core repulsion = 25898.051930 eV Total energy + Delta-G solvation = -4251.857593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.92135 -40.46377 -39.01670 -37.90791 -36.71637 -35.30293 -33.41616 -31.97569 -31.89607 -31.12176 -29.00699 -27.08922 -25.51841 -24.60600 -23.07829 -22.86562 -21.19793 -20.84866 -20.34156 -19.73726 -19.43676 -18.02348 -16.89265 -16.70638 -16.15117 -15.88497 -15.66283 -15.52935 -15.38500 -14.79340 -14.68842 -14.26978 -14.15662 -14.03201 -13.78712 -13.51435 -13.36739 -12.99420 -12.84866 -12.73447 -12.67496 -12.32806 -12.03665 -11.89439 -11.72099 -11.61749 -11.46942 -11.34364 -11.25771 -10.99428 -10.94601 -10.84940 -10.52444 -10.45603 -10.37993 -10.25234 -9.61601 -9.23743 -9.18197 -9.08996 -8.53385 -8.38865 -8.18324 -6.08814 -4.18480 1.80044 2.68197 3.27098 3.35051 3.39238 3.60851 4.00196 4.05983 4.15632 4.23391 4.36255 4.42760 4.61326 4.68849 4.74029 4.91927 4.92394 5.02435 5.05403 5.18193 5.18878 5.22148 5.34117 5.36063 5.46527 5.49880 5.58884 5.63772 5.75038 5.75453 5.81394 5.93592 5.95700 6.05207 6.11887 6.28157 6.34359 6.39593 6.47347 6.66445 6.74786 6.99857 7.08098 7.24752 7.33117 7.49878 7.81142 7.87761 8.16384 8.31494 8.52571 8.83747 9.49319 10.98191 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002438 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.200137 B =11483.165170 C =12303.730590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 H 0.092 0.908 4 N -0.702 5.702 5 C 0.509 3.491 6 O -0.518 6.518 7 C 0.494 3.506 8 O -0.542 6.542 9 N -0.666 5.666 10 C 0.159 3.841 11 C 0.021 3.979 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.094 4.094 23 C -0.120 4.120 24 C -0.145 4.145 25 C 0.090 3.910 26 F -0.212 7.212 27 C -0.144 4.144 28 C -0.115 4.115 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -5.430 -22.410 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.110 0.890 4 N -0.356 5.356 5 C 0.290 3.710 6 O -0.393 6.393 7 C 0.274 3.726 8 O -0.421 6.421 9 N -0.316 5.316 10 C 0.037 3.963 11 C 0.020 3.980 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.512 5.512 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.178 4.178 22 C -0.113 4.113 23 C -0.157 4.157 24 C -0.183 4.183 25 C 0.054 3.946 26 F -0.193 7.193 27 C -0.182 4.182 28 C -0.153 4.153 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.996 -5.421 -22.364 24.361 hybrid contribution 0.653 0.817 0.060 1.048 sum -7.342 -4.604 -22.304 23.928 Atomic orbital electron populations 1.22244 0.94947 1.02343 1.02873 1.21053 0.94200 0.97709 0.82995 0.88987 1.45818 1.66167 1.14779 1.08836 1.20484 0.78489 0.87089 0.84914 1.90757 1.48083 1.15436 1.84982 1.19967 0.81055 0.86783 0.84814 1.90706 1.49053 1.16690 1.85693 1.45893 1.57030 1.20415 1.08220 1.21208 0.97824 0.93746 0.83534 1.19030 0.93750 0.96254 0.88932 1.20387 0.95699 0.92223 1.45518 0.92003 1.24985 0.97299 0.96249 0.94528 1.69988 1.14123 1.28370 1.38710 0.86617 0.79219 0.83749 0.78664 1.20646 1.21158 1.19602 1.23032 0.91822 1.01760 1.08103 1.22475 0.99874 0.96740 0.98678 1.21467 0.95929 1.00140 0.93752 1.21588 0.94536 1.01970 0.97637 1.22128 1.01802 1.00044 0.94300 1.21575 0.94667 0.78902 0.99487 1.92808 1.90122 1.38538 1.97850 1.22127 0.94320 1.02412 0.99310 1.21587 1.00997 1.00077 0.92613 0.92302 0.91775 0.91207 0.75393 0.75011 0.90821 0.93430 0.92859 0.90217 0.91661 0.91743 0.89387 0.90293 0.90993 0.90846 0.90086 0.90663 0.90216 0.90093 0.90724 0.90710 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.13 37.16 0.34 -1.14 16 2 C 0.14 1.44 2.16 -67.93 -0.15 1.30 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 N -0.70 -8.53 4.38 -54.23 -0.24 -8.77 16 5 C 0.51 8.23 7.85 -11.59 -0.09 8.14 16 6 O -0.52 -9.47 16.16 5.49 0.09 -9.38 16 7 C 0.49 9.21 7.88 -11.59 -0.09 9.12 16 8 O -0.54 -10.85 16.47 5.50 0.09 -10.76 16 9 N -0.67 -13.35 5.46 -60.73 -0.33 -13.68 16 10 C 0.16 3.54 5.53 -4.04 -0.02 3.52 16 11 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 12 C -0.50 -13.02 8.59 -34.44 -0.30 -13.32 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 15 N -0.88 -24.12 12.65 55.43 0.70 -23.42 16 16 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 21 C -0.14 -3.16 9.14 -26.70 -0.24 -3.40 16 22 C -0.09 -0.71 1.82 -90.62 -0.17 -0.87 16 23 C -0.12 -1.04 4.92 -26.73 -0.13 -1.17 16 24 C -0.15 -1.00 5.72 -26.73 -0.15 -1.16 16 25 C 0.09 0.61 4.12 -26.73 -0.11 0.50 16 26 F -0.21 -2.14 16.05 2.25 0.04 -2.11 16 27 C -0.14 -0.80 5.72 -26.71 -0.15 -0.96 16 28 C -0.11 -0.76 4.73 -26.71 -0.13 -0.89 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 32 H 0.41 4.51 7.87 -40.82 -0.32 4.19 16 33 H 0.41 8.25 7.84 -40.82 -0.32 7.93 16 34 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 41 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 43 H 0.07 0.69 7.44 -51.93 -0.39 0.31 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 50 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -29.67 405.44 -8.91 -38.57 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.36 Total: 10.43 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.98 Total: -2.84 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.13 Total: -45.87 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.67 -8.91 -38.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328110886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.762 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds