Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 5 5 C 1.34769 * 120.00011 * 275.00046 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.53004 * 109.46855 * 240.00522 * 2 1 3 23 23 C 1.53000 * 109.47361 * 180.02562 * 22 2 1 24 24 C 1.52996 * 109.47164 * 179.97438 * 23 22 2 25 25 C 1.53009 * 109.47143 * 60.00144 * 24 23 22 26 26 F 1.39894 * 109.47058 * 59.99696 * 25 24 23 27 27 C 1.52998 * 109.46639 * 299.99802 * 25 24 23 28 28 C 1.53000 * 109.47204 * 59.99497 * 22 2 1 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 31 31 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 32 32 H 0.97004 * 120.00150 * 94.99368 * 4 2 1 33 33 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 34 34 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 35 35 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 36 36 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 37 37 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 38 38 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 40 40 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 41 41 H 1.09008 * 109.47085 * 299.99968 * 22 2 1 42 42 H 1.09001 * 109.46847 * 299.99624 * 23 22 2 43 43 H 1.09002 * 109.46871 * 59.99900 * 23 22 2 44 44 H 1.08994 * 109.47428 * 300.00131 * 24 23 22 45 45 H 1.09002 * 109.46953 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46904 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47154 * 299.99975 * 27 25 24 48 48 H 1.09007 * 109.47196 * 179.97438 * 27 25 24 49 49 H 1.09003 * 109.47395 * 300.00204 * 28 22 2 50 50 H 1.08994 * 109.46742 * 60.00353 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8590 1.1591 2.4115 7 6 2.6450 -0.7231 3.5774 8 8 3.0205 -1.8746 3.5023 9 7 2.6769 -0.0797 4.7611 10 6 3.2665 -0.7313 5.9333 11 6 3.0698 0.1570 7.1635 12 6 3.7929 1.4789 7.1329 13 1 3.2802 2.3671 6.7943 14 6 5.1071 1.5554 7.5426 15 7 5.7023 0.4954 8.0444 16 14 6.0424 3.1647 7.3850 17 1 5.8689 3.9617 8.6260 18 1 7.4850 2.8805 7.1769 19 1 5.5169 3.9313 6.2267 20 6 1.7060 0.1136 7.8554 21 6 2.9224 -0.5364 8.5193 22 6 2.0399 -0.7212 -1.2494 23 6 3.5699 -0.7218 -1.2492 24 6 4.0798 -1.4435 -2.4981 25 6 3.5702 -0.7222 -3.7477 26 9 4.0371 0.5965 -3.7478 27 6 2.0403 -0.7217 -3.7478 28 6 1.5298 0.0001 -2.4985 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 2.2491 -1.6319 1.1525 33 1 2.3095 0.8148 4.8371 34 1 4.3320 -0.8876 5.7647 35 1 2.7798 -1.6926 6.0978 36 1 6.6022 0.5669 8.3993 37 1 1.3316 1.0412 8.2886 38 1 0.9489 -0.5482 7.4346 39 1 2.9651 -1.6255 8.5350 40 1 3.3487 -0.0367 9.3892 41 1 1.6765 -1.7489 -1.2494 42 1 3.9336 0.3058 -1.2489 43 1 3.9329 -1.2360 -0.3592 44 1 3.7160 -2.4709 -2.4980 45 1 5.1698 -1.4435 -2.4982 46 1 3.9331 -1.2367 -4.6375 47 1 1.6765 -1.7492 -3.7477 48 1 1.6772 -0.2075 -4.6378 49 1 0.4397 0.0001 -2.4985 50 1 1.8931 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328110886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -142.926051 kcal Electronic energy + Delta-G solvation = -30150.672232 eV Core-core repulsion = 25898.051930 eV Total energy + Delta-G solvation = -4252.620302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.57044 -41.76032 -40.13774 -39.06360 -38.46315 -36.28103 -34.99713 -33.97619 -32.75258 -31.73582 -29.69893 -28.73065 -27.44062 -25.72290 -24.01646 -23.54406 -22.92069 -21.72711 -21.46418 -21.29348 -20.53888 -19.45332 -18.11816 -17.87381 -17.45707 -17.00835 -16.79565 -16.60610 -16.33434 -16.24241 -16.21317 -15.74324 -15.22647 -14.99988 -14.85013 -14.68717 -14.43210 -14.37891 -13.89763 -13.68173 -13.55076 -13.50007 -13.28704 -12.97127 -12.89129 -12.84359 -12.80648 -12.63952 -12.40588 -12.38249 -12.07544 -12.02260 -11.96095 -11.49264 -11.42924 -11.06991 -10.99214 -10.96899 -10.69943 -10.46556 -10.27410 -10.11621 -9.96890 -8.12225 -6.25747 0.38595 1.38487 1.39129 1.43043 1.51150 2.17845 2.40297 2.71157 3.15380 3.40792 3.45016 3.58595 3.61850 3.68647 3.93416 4.01278 4.10656 4.12006 4.18973 4.34879 4.39213 4.46282 4.50592 4.54279 4.58632 4.61597 4.67715 4.71588 4.85716 4.89978 4.91182 5.01208 5.01405 5.06392 5.10060 5.17416 5.20134 5.25183 5.27688 5.33486 5.37863 5.41940 5.51601 5.52912 5.67733 5.75840 6.02667 6.34573 6.47115 6.78837 6.82465 7.00549 7.43968 8.94332 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002438 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.200137 B =11483.165170 C =12303.730590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.069 0.931 4 N -0.681 5.681 5 C 0.514 3.486 6 O -0.543 6.543 7 C 0.495 3.505 8 O -0.555 6.555 9 N -0.670 5.670 10 C 0.175 3.825 11 C -0.003 4.003 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.029 3.971 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.271 1.271 20 C -0.181 4.181 21 C -0.145 4.145 22 C -0.083 4.083 23 C -0.122 4.122 24 C -0.142 4.142 25 C 0.079 3.921 26 F -0.236 7.236 27 C -0.139 4.139 28 C -0.114 4.114 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.414 0.586 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 -6.446 -24.488 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.087 0.913 4 N -0.334 5.334 5 C 0.294 3.706 6 O -0.421 6.421 7 C 0.276 3.724 8 O -0.435 6.435 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.004 4.004 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.172 4.172 15 N -0.540 5.540 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.218 4.218 21 C -0.183 4.183 22 C -0.102 4.102 23 C -0.160 4.160 24 C -0.180 4.180 25 C 0.044 3.956 26 F -0.217 7.217 27 C -0.177 4.177 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.256 0.744 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.660 -6.451 -24.479 27.095 hybrid contribution 1.161 1.103 0.653 1.729 sum -8.499 -5.348 -23.825 25.855 Atomic orbital electron populations 1.22210 0.93450 1.03403 1.02791 1.21271 0.95294 0.96723 0.82917 0.91307 1.45817 1.64331 1.15031 1.08202 1.20013 0.78820 0.86662 0.85107 1.90754 1.49725 1.16289 1.85283 1.20398 0.80276 0.86590 0.85173 1.90689 1.49480 1.17354 1.85995 1.45811 1.57369 1.20469 1.08333 1.20825 0.95995 0.94047 0.83952 1.19066 0.95862 0.95767 0.89705 1.20656 0.96021 0.93231 1.44733 0.92519 1.25619 0.98192 0.98791 0.94621 1.70081 1.14279 1.29825 1.39827 0.85765 0.77841 0.80729 0.78618 1.20008 1.21328 1.19612 1.23020 0.91079 1.01875 1.05814 1.22397 1.01223 0.97259 0.97448 1.21434 0.94883 1.01171 0.92729 1.21573 0.95581 1.00510 0.98306 1.22127 1.01447 1.01025 0.93367 1.21892 0.95826 0.77750 1.00171 1.92765 1.90532 1.40433 1.97952 1.22136 0.93069 1.03726 0.98742 1.21590 1.01983 0.98987 0.92612 0.90601 0.94149 0.89043 0.74417 0.74964 0.94229 0.92565 0.93043 0.89957 0.89149 0.90572 0.91606 0.87855 0.93665 0.91995 0.87724 0.91413 0.88133 0.87693 0.90050 0.88970 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.13 71.98 0.66 -1.87 16 2 C 0.14 2.66 2.16 44.99 0.10 2.76 16 3 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 4 N -0.68 -15.92 4.38 -443.86 -1.94 -17.87 16 5 C 0.51 16.54 7.85 87.27 0.69 17.22 16 6 O -0.54 -20.07 16.16 -3.27 -0.05 -20.12 16 7 C 0.50 18.42 7.88 87.27 0.69 19.11 16 8 O -0.56 -22.02 16.47 -3.25 -0.05 -22.07 16 9 N -0.67 -26.99 5.46 -464.41 -2.54 -29.53 16 10 C 0.18 7.84 5.53 86.38 0.48 8.32 16 11 C 0.00 -0.15 1.47 -52.93 -0.08 -0.23 16 12 C -0.51 -26.70 8.59 25.60 0.22 -26.48 16 13 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 14 C 0.03 1.56 5.43 84.65 0.46 2.02 16 15 N -0.90 -50.65 12.65 21.45 0.27 -50.38 16 16 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C -0.18 -7.29 9.96 30.61 0.30 -6.98 16 21 C -0.15 -6.54 9.14 30.62 0.28 -6.26 16 22 C -0.08 -1.08 1.82 -10.79 -0.02 -1.10 16 23 C -0.12 -2.02 4.92 30.59 0.15 -1.87 16 24 C -0.14 -1.71 5.72 30.60 0.17 -1.54 16 25 C 0.08 0.92 4.12 30.60 0.13 1.05 16 26 F -0.24 -4.66 16.05 44.97 0.72 -3.94 16 27 C -0.14 -1.11 5.72 30.61 0.18 -0.94 16 28 C -0.11 -1.24 4.73 30.61 0.14 -1.10 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 1.05 6.43 -2.39 -0.02 1.04 16 32 H 0.42 8.54 7.87 -92.71 -0.73 7.81 16 33 H 0.41 16.63 7.84 -92.71 -0.73 15.91 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 36 H 0.26 14.07 8.32 -92.70 -0.77 13.29 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 38 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.04 0.98 7.80 -2.39 -0.02 0.96 16 43 H 0.06 1.14 7.44 -2.39 -0.02 1.12 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.09 0.70 6.43 -2.39 -0.02 0.68 16 50 H 0.05 0.80 7.80 -2.39 -0.02 0.79 16 Total: -1.00 -65.17 405.44 2.47 -62.69 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.50 Total: 33.73 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 4.54 Total: 2.11 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.21 Total: -97.77 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.11 Total: -42.19 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.72 Total: -3.94 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.17 2.47 -62.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328110886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.234 kcal (2) G-P(sol) polarization free energy of solvation -65.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds