Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47036 * 2 1 4 4 N 1.46502 * 109.47016 * 119.99674 * 2 1 3 5 5 C 1.34774 * 120.00119 * 275.00040 * 4 2 1 6 6 O 1.21280 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00031 * 179.97438 * 5 4 2 8 8 S 1.80996 * 109.46994 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99950 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00022 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00404 * 180.02562 * 9 8 7 12 12 N 1.31636 * 119.99539 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00326 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47448 * 59.99927 * 13 11 9 15 15 H 1.48501 * 109.47228 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47376 * 299.99733 * 13 11 9 17 17 C 1.52999 * 109.47242 * 239.99832 * 2 1 3 18 18 C 1.53517 * 114.16932 * 174.87634 * 17 2 1 19 19 N 1.47481 * 87.92855 * 220.32714 * 18 17 2 20 20 C 1.46909 * 111.00054 * 138.70446 * 19 18 17 21 21 C 1.53000 * 109.47250 * 170.00087 * 20 19 18 22 22 C 1.53774 * 113.61271 * 174.99822 * 21 20 19 23 23 C 1.53787 * 87.08072 * 139.98103 * 22 21 20 24 24 C 1.52998 * 113.61383 * 89.11581 * 23 22 21 25 25 C 1.52997 * 113.61132 * 220.01647 * 23 22 21 26 26 C 1.53778 * 113.61222 * 272.49581 * 21 20 19 27 27 C 1.47477 * 87.83693 * 27.01098 * 19 18 17 28 28 H 1.09007 * 109.46923 * 184.93988 * 1 2 3 29 29 H 1.08994 * 109.47295 * 304.94325 * 1 2 3 30 30 H 1.08996 * 109.46882 * 64.94586 * 1 2 3 31 31 H 0.97001 * 119.99844 * 95.00377 * 4 2 1 32 32 H 1.08998 * 109.46894 * 300.00205 * 7 5 4 33 33 H 1.09002 * 109.46708 * 60.00351 * 7 5 4 34 34 H 0.96999 * 119.99514 * 180.02562 * 12 11 9 35 35 H 1.09006 * 113.25732 * 307.82212 * 17 2 1 36 36 H 1.08995 * 113.47807 * 105.56759 * 18 17 2 37 37 H 1.08997 * 113.47735 * 335.08928 * 18 17 2 38 38 H 1.08993 * 109.47049 * 49.99828 * 20 19 18 39 39 H 1.09006 * 109.46579 * 289.99954 * 20 19 18 40 40 H 1.08999 * 112.90690 * 43.74478 * 21 20 19 41 41 H 1.09001 * 113.61320 * 254.52487 * 22 21 20 42 42 H 1.08993 * 113.61802 * 25.43317 * 22 21 20 43 43 H 1.08998 * 109.47542 * 60.00241 * 24 23 22 44 44 H 1.09006 * 109.46772 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47302 * 300.00172 * 24 23 22 46 46 H 1.09004 * 109.46972 * 60.00478 * 25 23 22 47 47 H 1.09000 * 109.47038 * 179.97438 * 25 23 22 48 48 H 1.08995 * 109.47830 * 299.99795 * 25 23 22 49 49 H 1.08996 * 113.61777 * 334.56511 * 26 21 20 50 50 H 1.08998 * 113.61443 * 105.38894 * 26 21 20 51 51 H 1.08998 * 113.47901 * 87.75691 * 27 19 18 52 52 H 1.09007 * 113.47674 * 218.22551 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3135 -0.6305 6.2405 10 1 3.5220 -1.6673 6.0207 11 6 3.5197 -0.1377 7.5215 12 7 3.2651 1.1257 7.7895 13 14 4.1596 -1.2667 8.8650 14 1 5.4863 -1.8042 8.4697 15 1 4.2929 -0.5030 10.1316 16 1 3.2090 -2.3905 9.0617 17 6 2.0400 -0.7213 -1.2492 18 6 3.5648 -0.6767 -1.4222 19 7 3.3412 -0.4650 -2.8645 20 6 4.2688 0.5411 -3.3990 21 6 4.1816 0.5549 -4.9264 22 6 5.0262 1.6603 -5.5816 23 6 5.3970 0.6288 -6.6602 24 6 4.4238 0.5994 -7.8404 25 6 6.8614 0.6989 -7.0975 26 6 5.1200 -0.4561 -5.6061 27 6 2.0438 0.1441 -2.5171 28 1 -0.3633 -1.0239 0.0885 29 1 -0.3633 0.5886 0.8423 30 1 -0.3633 0.4352 -0.9309 31 1 2.2490 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8326 33 1 3.6479 -1.1212 3.3987 34 1 3.4095 1.4703 8.6846 35 1 1.6045 -1.7116 -1.3824 36 1 4.0556 -1.6226 -1.1933 37 1 4.0334 0.1731 -0.9261 38 1 5.2862 0.2948 -3.0953 39 1 4.0017 1.5240 -3.0108 40 1 3.1560 0.5136 -5.2932 41 1 4.4355 2.4946 -5.9601 42 1 5.8728 1.9808 -4.9745 43 1 4.4040 1.5781 -8.3197 44 1 4.7487 -0.1517 -8.5606 45 1 3.4251 0.3502 -7.4817 46 1 7.5064 0.5167 -6.2379 47 1 7.0498 -0.0576 -7.8593 48 1 7.0717 1.6870 -7.5066 49 1 5.9923 -0.7143 -5.0058 50 1 4.6054 -1.3311 -6.0031 51 1 2.1066 1.2129 -2.3132 52 1 1.2456 -0.1063 -3.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329971131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -22.861604 kcal Electronic energy + Delta-G solvation = -26786.398819 eV Core-core repulsion = 23105.198078 eV Total energy + Delta-G solvation = -3681.200741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70321 -40.66226 -40.02256 -36.37511 -34.58214 -33.38899 -32.27080 -30.11186 -29.36328 -28.28228 -27.66042 -26.85718 -26.58848 -25.82975 -23.14796 -21.69522 -21.24374 -20.77818 -19.76132 -19.12440 -17.85544 -17.62981 -16.87683 -16.75269 -16.50080 -16.39538 -16.03455 -15.67754 -15.56455 -15.20509 -14.85124 -14.60813 -14.57987 -14.34392 -14.00134 -13.83306 -13.68335 -13.60029 -13.39792 -13.21233 -13.16220 -12.86792 -12.80160 -12.69031 -12.60377 -12.55494 -12.23474 -12.07552 -11.93108 -11.73022 -11.51317 -11.46654 -11.34444 -11.12735 -10.90825 -10.88090 -10.73939 -10.27438 -10.16025 -9.80742 -8.66266 -8.34376 -6.12408 1.27319 1.43839 1.47047 1.56864 1.64320 2.24942 2.29517 2.94093 2.99659 3.30428 3.45324 3.59716 3.65820 3.72025 3.78059 3.86670 4.00126 4.15976 4.19180 4.29459 4.30564 4.33544 4.38789 4.47990 4.50702 4.52101 4.55971 4.62348 4.74219 4.77435 4.79039 4.79828 4.82214 4.87529 4.92043 4.97275 5.00311 5.02874 5.04777 5.18996 5.20895 5.27395 5.31431 5.35005 5.38327 5.41689 5.55128 5.58973 5.69518 6.06474 6.19715 6.55242 7.06819 7.28796 8.74541 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.001719 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.425245 B =16288.953357 C =17045.949555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.061 0.939 4 N -0.706 5.706 5 C 0.536 3.464 6 O -0.567 6.567 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.548 4.548 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.107 4.107 18 C 0.002 3.998 19 N -0.471 5.471 20 C 0.029 3.971 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.117 4.117 27 C 0.012 3.988 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.084 0.916 31 H 0.416 0.584 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -6.512 -31.766 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.079 0.921 4 N -0.360 5.360 5 C 0.322 3.678 6 O -0.445 6.445 7 C -0.281 4.281 8 S 0.075 5.925 9 C -0.696 4.696 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.127 4.127 18 C -0.127 4.127 19 N -0.193 5.193 20 C -0.099 4.099 21 C -0.111 4.111 22 C -0.167 4.167 23 C -0.091 4.091 24 C -0.183 4.183 25 C -0.192 4.192 26 C -0.154 4.154 27 C -0.118 4.118 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.950 -4.973 -32.086 32.483 hybrid contribution 0.842 -1.041 1.639 2.116 sum 1.792 -6.014 -30.448 31.088 Atomic orbital electron populations 1.22110 0.94387 1.02843 1.02240 1.20946 0.94726 0.96037 0.83220 0.92088 1.45790 1.67381 1.14577 1.08228 1.20025 0.76641 0.86540 0.84632 1.90686 1.50821 1.17828 1.85181 1.23381 1.05478 1.03174 0.96083 1.85563 1.86718 1.17331 1.02844 1.23185 1.51009 0.98487 0.96892 0.89918 1.26123 0.95060 0.97194 1.00727 1.70182 1.46798 1.15472 1.22302 0.85012 0.79077 0.77763 0.76200 1.18689 1.20404 1.18633 1.22956 0.95842 1.01213 0.92642 1.23792 0.96760 1.02381 0.89766 1.68922 1.03180 1.33497 1.13705 1.22706 0.97331 0.93872 0.96017 1.22307 0.99004 0.97151 0.92678 1.23104 0.99634 0.96508 0.97419 1.21813 0.96041 0.96841 0.94425 1.21578 0.98162 1.02066 0.96533 1.21724 0.94439 1.01848 1.01227 1.23016 0.98890 0.96525 0.96961 1.23901 0.94536 0.97462 0.95866 0.90850 0.94929 0.89678 0.74754 0.87294 0.87325 0.92015 0.85593 0.88960 0.92584 0.91343 0.94051 0.89395 0.91387 0.90339 0.92123 0.92077 0.92551 0.92837 0.92348 0.92400 0.90769 0.91906 0.91453 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.47 71.98 0.68 -2.44 16 2 C 0.16 3.26 2.34 44.99 0.11 3.37 16 3 H 0.06 1.64 7.44 -2.39 -0.02 1.62 16 4 N -0.71 -16.97 4.96 -442.53 -2.19 -19.16 16 5 C 0.54 19.39 7.81 87.66 0.68 20.07 16 6 O -0.57 -26.04 15.52 -3.03 -0.05 -26.09 16 7 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 8 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 9 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 10 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 11 C 0.01 0.78 5.49 84.86 0.47 1.25 16 12 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 13 Si 1.00 43.55 29.55 68.60 2.03 45.57 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 C -0.11 -1.56 3.49 -10.45 -0.04 -1.60 16 18 C 0.00 0.03 7.14 83.58 0.60 0.63 16 19 N -0.47 -7.50 6.33 -927.85 -5.88 -13.38 16 20 C 0.03 0.46 4.65 86.30 0.40 0.86 16 21 C -0.09 -1.26 3.62 -10.27 -0.04 -1.30 16 22 C -0.13 -1.61 6.79 31.12 0.21 -1.40 16 23 C -0.09 -1.07 1.39 -51.66 -0.07 -1.14 16 24 C -0.13 -1.30 9.07 71.98 0.65 -0.64 16 25 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 26 C -0.12 -1.56 6.74 31.12 0.21 -1.35 16 27 C 0.01 0.17 7.26 83.57 0.61 0.77 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.42 7.18 8.60 -92.71 -0.80 6.38 16 32 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 33 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.13 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.12 7.87 -2.39 -0.02 1.10 16 38 H 0.07 1.13 7.78 -2.39 -0.02 1.11 16 39 H 0.04 0.69 7.30 -2.38 -0.02 0.67 16 40 H 0.09 1.25 7.65 -2.39 -0.02 1.23 16 41 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 42 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.06 0.60 7.34 -2.39 -0.02 0.58 16 46 H 0.05 0.60 7.94 -2.38 -0.02 0.58 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 1.05 7.72 -2.39 -0.02 1.03 16 50 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 51 H 0.07 1.05 7.28 -2.39 -0.02 1.03 16 52 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -73.95 426.60 -0.67 -74.62 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.08 Total: 22.88 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 6.22 Total: -19.04 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -7.78 Total: -88.35 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -73.95 -0.67 -74.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329971131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds