Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46941 * 2 1 4 4 N 1.46499 * 109.47014 * 240.00469 * 2 1 3 5 5 C 1.34780 * 120.00447 * 84.99691 * 4 2 1 6 6 O 1.21278 * 119.99450 * 359.97438 * 5 4 2 7 7 C 1.50691 * 119.99963 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.47024 * 179.97438 * 7 5 4 9 9 C 1.76201 * 100.00123 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.38800 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99860 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99895 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47406 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46734 * 120.00341 * 13 11 9 16 16 H 1.48501 * 109.46895 * 239.99827 * 13 11 9 17 17 C 1.52990 * 109.47472 * 120.00129 * 2 1 3 18 18 C 1.53507 * 114.17384 * 185.05327 * 17 2 1 19 19 N 1.47485 * 87.93613 * 139.67125 * 18 17 2 20 20 C 1.46902 * 111.00005 * 221.29834 * 19 18 17 21 21 C 1.53003 * 109.46873 * 169.99758 * 20 19 18 22 22 C 1.52999 * 109.46828 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47137 * 180.02562 * 22 21 20 24 24 C 1.53776 * 113.61668 * 184.99743 * 23 22 21 25 25 C 1.53779 * 87.17310 * 220.06022 * 24 23 22 26 26 C 1.53780 * 87.08177 * 25.39011 * 25 24 23 27 27 C 1.47479 * 87.83236 * 332.99069 * 19 18 17 28 28 H 1.09003 * 109.47383 * 299.16328 * 1 2 3 29 29 H 1.08999 * 109.47599 * 59.16914 * 1 2 3 30 30 H 1.09001 * 109.47388 * 179.16450 * 1 2 3 31 31 H 0.97006 * 120.00080 * 264.99502 * 4 2 1 32 32 H 1.09000 * 109.47385 * 299.99963 * 7 5 4 33 33 H 1.09004 * 109.47464 * 60.00509 * 7 5 4 34 34 H 0.97002 * 119.99699 * 180.02562 * 12 11 9 35 35 H 1.09002 * 113.26039 * 52.10177 * 17 2 1 36 36 H 1.09003 * 113.47535 * 24.90309 * 18 17 2 37 37 H 1.09005 * 113.53615 * 254.44510 * 18 17 2 38 38 H 1.08999 * 109.46784 * 49.99855 * 20 19 18 39 39 H 1.08992 * 109.46916 * 289.99936 * 20 19 18 40 40 H 1.08994 * 109.47030 * 60.00059 * 21 20 19 41 41 H 1.08996 * 109.47025 * 299.99899 * 21 20 19 42 42 H 1.09000 * 109.47603 * 59.99739 * 22 21 20 43 43 H 1.09009 * 109.46965 * 300.00000 * 22 21 20 44 44 H 1.09002 * 112.90442 * 316.25378 * 23 22 21 45 45 H 1.08997 * 113.61563 * 105.46936 * 24 23 22 46 46 H 1.08999 * 113.61833 * 334.65246 * 24 23 22 47 47 H 1.09006 * 113.61140 * 139.94162 * 25 24 23 48 48 H 1.08995 * 113.61759 * 270.84040 * 25 24 23 49 49 H 1.09002 * 113.61040 * 89.11383 * 26 25 24 50 50 H 1.08994 * 113.61506 * 219.92719 * 26 25 24 51 51 H 1.08996 * 113.47749 * 141.77642 * 27 19 18 52 52 H 1.09001 * 113.47884 * 272.24512 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1585 -2.4117 7 6 2.6498 -0.7284 -3.5875 8 16 2.7098 0.4345 -4.9733 9 6 3.3144 -0.6303 -6.2403 10 1 3.5253 -1.6664 -6.0199 11 6 3.5208 -0.1373 -7.5212 12 7 3.2653 1.1257 -7.7894 13 14 4.1612 -1.2664 -8.8646 14 1 4.3670 -2.6284 -8.3101 15 1 3.1739 -1.3274 -9.9723 16 1 5.4511 -0.7409 -9.3796 17 6 2.0400 -0.7212 1.2491 18 6 3.5648 -0.6782 1.4213 19 7 3.3425 -0.4656 2.8637 20 6 4.2714 0.5398 3.3970 21 6 3.8541 0.9156 4.8202 22 6 4.8212 1.9631 5.3754 23 6 4.4043 2.3385 6.7988 24 6 5.2414 3.4766 7.4060 25 6 5.2091 2.6924 8.7284 26 6 5.0083 1.4250 7.8809 27 6 2.0454 0.1446 2.5168 28 1 -0.3634 0.5008 0.8974 29 1 -0.3634 0.5267 -0.8824 30 1 -0.3634 -1.0275 -0.0150 31 1 2.2490 -1.6317 -1.1527 32 1 3.6491 -1.1202 -3.3979 33 1 1.9776 -1.5507 -3.8326 34 1 3.4091 1.4702 -8.6847 35 1 1.6036 -1.7110 1.3830 36 1 4.0341 0.1710 0.9244 37 1 4.0556 -1.6242 1.1924 38 1 4.2479 1.4275 2.7650 39 1 5.2813 0.1301 3.4107 40 1 3.8775 0.0278 5.4521 41 1 2.8441 1.3252 4.8064 42 1 4.7974 2.8508 4.7434 43 1 5.8314 1.5538 5.3890 44 1 3.3290 2.4846 6.9013 45 1 4.7149 4.4299 7.4507 46 1 6.2384 3.5636 6.9742 47 1 6.1549 2.7103 9.2699 48 1 4.3543 2.9355 9.3595 49 1 5.9415 0.9499 7.5782 50 1 4.2949 0.7214 8.3098 51 1 1.2474 -0.1045 3.2162 52 1 2.1091 1.2134 2.3123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329972072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -7.320401 kcal Electronic energy + Delta-G solvation = -26348.923901 eV Core-core repulsion = 22668.397077 eV Total energy + Delta-G solvation = -3680.526824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80969 -39.36510 -38.95933 -35.52680 -34.04162 -32.43125 -31.46387 -29.48154 -28.46953 -26.32802 -26.13204 -25.92039 -25.47596 -23.51507 -21.90437 -21.16408 -20.37096 -19.87389 -19.74504 -17.84279 -16.55919 -16.46355 -16.26556 -15.86172 -15.60361 -15.14997 -14.98040 -14.80695 -14.73004 -14.32733 -14.05433 -13.59984 -13.20687 -13.17875 -13.04278 -12.86196 -12.82740 -12.68528 -12.59778 -12.16434 -11.98772 -11.93098 -11.66232 -11.60669 -11.15227 -11.12687 -11.07186 -11.01951 -10.92483 -10.89690 -10.75064 -10.66233 -10.49421 -10.29745 -9.80395 -9.38761 -9.22668 -9.07809 -8.84579 -8.23109 -6.49989 -6.22113 -3.92393 3.01663 3.10737 3.21293 3.27745 3.32255 3.64816 3.66999 4.15207 4.20185 4.20433 4.25690 4.30786 4.44064 4.45601 4.62050 4.75347 4.85925 4.97495 5.04626 5.08463 5.13272 5.17747 5.19265 5.23545 5.26026 5.32166 5.34437 5.36019 5.37921 5.40431 5.47833 5.49148 5.53448 5.55073 5.58420 5.60630 5.70428 5.79382 5.85183 5.88719 5.89663 5.98676 6.02699 6.07294 6.13950 6.14750 6.23426 6.67582 6.76533 7.59751 7.74238 8.35250 8.63525 9.23528 10.85391 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.001575 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.997807 B =17778.867359 C =18327.550275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.085 0.915 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.123 4.123 18 C 0.005 3.995 19 N -0.473 5.473 20 C 0.018 3.982 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.137 4.137 27 C 0.010 3.990 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -2.235 30.893 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.103 0.897 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.165 5.835 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.143 4.143 18 C -0.124 4.124 19 N -0.195 5.195 20 C -0.111 4.111 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.177 4.177 25 C -0.182 4.182 26 C -0.175 4.175 27 C -0.120 4.120 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.104 0.896 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.289 -0.657 31.166 31.174 hybrid contribution 0.921 -1.787 -1.308 2.398 sum 1.209 -2.444 29.859 29.983 Atomic orbital electron populations 1.22150 0.95193 1.02140 1.02555 1.20837 0.94191 0.96975 0.83093 0.89650 1.46036 1.69297 1.13937 1.09390 1.20299 0.76797 0.87210 0.83762 1.90694 1.48398 1.15811 1.84402 1.23533 1.03644 1.04845 0.98395 1.85389 1.86260 1.12990 0.98822 1.22914 1.50780 0.98225 0.96388 0.90888 1.24990 0.95104 0.95523 0.97956 1.70029 1.45640 1.13221 1.21417 0.86121 0.78523 0.80149 0.80731 1.19611 1.20565 1.20574 1.23046 0.96358 1.00672 0.94199 1.23815 0.96476 1.02794 0.89336 1.68936 1.02981 1.33203 1.14361 1.22716 0.97683 0.94276 0.96415 1.21478 0.99110 0.99092 0.95161 1.21551 0.99181 0.98687 0.95323 1.22575 0.99643 0.96601 0.93970 1.22951 1.00546 0.97562 0.96639 1.22813 1.01860 0.97057 0.96492 1.23007 1.01079 0.96380 0.97003 1.23789 0.94353 0.97870 0.95964 0.91941 0.91651 0.92475 0.76870 0.89286 0.89254 0.92250 0.87524 0.90922 0.89589 0.93925 0.90642 0.91205 0.92109 0.91895 0.91818 0.89372 0.91663 0.90158 0.91632 0.90354 0.90173 0.91669 0.89587 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.47 37.16 0.35 -1.38 16 2 C 0.15 1.73 2.34 -67.94 -0.16 1.57 16 3 H 0.09 1.14 7.43 -51.93 -0.39 0.75 16 4 N -0.73 -9.39 4.96 -53.81 -0.27 -9.66 16 5 C 0.53 9.71 7.81 -10.99 -0.09 9.62 16 6 O -0.52 -11.55 15.52 5.56 0.09 -11.46 16 7 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 10 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 13 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 C -0.12 -1.06 3.49 -90.10 -0.31 -1.37 16 18 C 0.00 0.04 7.17 -7.55 -0.05 -0.01 16 19 N -0.47 -4.24 6.41 -244.63 -1.57 -5.81 16 20 C 0.02 0.15 4.82 -3.82 -0.02 0.13 16 21 C -0.11 -0.78 5.31 -26.73 -0.14 -0.93 16 22 C -0.11 -0.70 5.05 -26.73 -0.14 -0.83 16 23 C -0.11 -0.66 3.66 -89.72 -0.33 -0.99 16 24 C -0.14 -0.80 7.64 -25.92 -0.20 -1.00 16 25 C -0.14 -0.79 8.08 -25.92 -0.21 -1.00 16 26 C -0.14 -0.79 7.64 -25.83 -0.20 -0.99 16 27 C 0.01 0.08 6.56 -7.55 -0.05 0.03 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.37 7.56 -51.93 -0.39 -0.02 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 7.85 -51.92 -0.41 0.00 16 44 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.46 7.90 -51.93 -0.41 0.05 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.07 0.61 7.56 -51.93 -0.39 0.21 16 LS Contribution 428.53 15.07 6.46 6.46 Total: -1.00 -33.15 428.53 -12.78 -45.93 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.87 Total: 0.38 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.12 Total: -12.92 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -1.10 Total: -40.89 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -33.15 -12.78 -45.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329972072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.612 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds