Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46941 * 2 1 4 4 N 1.46499 * 109.47014 * 240.00469 * 2 1 3 5 5 C 1.34780 * 120.00447 * 84.99691 * 4 2 1 6 6 O 1.21278 * 119.99450 * 359.97438 * 5 4 2 7 7 C 1.50691 * 119.99963 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.47024 * 179.97438 * 7 5 4 9 9 C 1.76201 * 100.00123 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.38800 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99860 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99895 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47406 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46734 * 120.00341 * 13 11 9 16 16 H 1.48501 * 109.46895 * 239.99827 * 13 11 9 17 17 C 1.52990 * 109.47472 * 120.00129 * 2 1 3 18 18 C 1.53507 * 114.17384 * 185.05327 * 17 2 1 19 19 N 1.47485 * 87.93613 * 139.67125 * 18 17 2 20 20 C 1.46902 * 111.00005 * 221.29834 * 19 18 17 21 21 C 1.53003 * 109.46873 * 169.99758 * 20 19 18 22 22 C 1.52999 * 109.46828 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47137 * 180.02562 * 22 21 20 24 24 C 1.53776 * 113.61668 * 184.99743 * 23 22 21 25 25 C 1.53779 * 87.17310 * 220.06022 * 24 23 22 26 26 C 1.53780 * 87.08177 * 25.39011 * 25 24 23 27 27 C 1.47479 * 87.83236 * 332.99069 * 19 18 17 28 28 H 1.09003 * 109.47383 * 299.16328 * 1 2 3 29 29 H 1.08999 * 109.47599 * 59.16914 * 1 2 3 30 30 H 1.09001 * 109.47388 * 179.16450 * 1 2 3 31 31 H 0.97006 * 120.00080 * 264.99502 * 4 2 1 32 32 H 1.09000 * 109.47385 * 299.99963 * 7 5 4 33 33 H 1.09004 * 109.47464 * 60.00509 * 7 5 4 34 34 H 0.97002 * 119.99699 * 180.02562 * 12 11 9 35 35 H 1.09002 * 113.26039 * 52.10177 * 17 2 1 36 36 H 1.09003 * 113.47535 * 24.90309 * 18 17 2 37 37 H 1.09005 * 113.53615 * 254.44510 * 18 17 2 38 38 H 1.08999 * 109.46784 * 49.99855 * 20 19 18 39 39 H 1.08992 * 109.46916 * 289.99936 * 20 19 18 40 40 H 1.08994 * 109.47030 * 60.00059 * 21 20 19 41 41 H 1.08996 * 109.47025 * 299.99899 * 21 20 19 42 42 H 1.09000 * 109.47603 * 59.99739 * 22 21 20 43 43 H 1.09009 * 109.46965 * 300.00000 * 22 21 20 44 44 H 1.09002 * 112.90442 * 316.25378 * 23 22 21 45 45 H 1.08997 * 113.61563 * 105.46936 * 24 23 22 46 46 H 1.08999 * 113.61833 * 334.65246 * 24 23 22 47 47 H 1.09006 * 113.61140 * 139.94162 * 25 24 23 48 48 H 1.08995 * 113.61759 * 270.84040 * 25 24 23 49 49 H 1.09002 * 113.61040 * 89.11383 * 26 25 24 50 50 H 1.08994 * 113.61506 * 219.92719 * 26 25 24 51 51 H 1.08996 * 113.47749 * 141.77642 * 27 19 18 52 52 H 1.09001 * 113.47884 * 272.24512 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1585 -2.4117 7 6 2.6498 -0.7284 -3.5875 8 16 2.7098 0.4345 -4.9733 9 6 3.3144 -0.6303 -6.2403 10 1 3.5253 -1.6664 -6.0199 11 6 3.5208 -0.1373 -7.5212 12 7 3.2653 1.1257 -7.7894 13 14 4.1612 -1.2664 -8.8646 14 1 4.3670 -2.6284 -8.3101 15 1 3.1739 -1.3274 -9.9723 16 1 5.4511 -0.7409 -9.3796 17 6 2.0400 -0.7212 1.2491 18 6 3.5648 -0.6782 1.4213 19 7 3.3425 -0.4656 2.8637 20 6 4.2714 0.5398 3.3970 21 6 3.8541 0.9156 4.8202 22 6 4.8212 1.9631 5.3754 23 6 4.4043 2.3385 6.7988 24 6 5.2414 3.4766 7.4060 25 6 5.2091 2.6924 8.7284 26 6 5.0083 1.4250 7.8809 27 6 2.0454 0.1446 2.5168 28 1 -0.3634 0.5008 0.8974 29 1 -0.3634 0.5267 -0.8824 30 1 -0.3634 -1.0275 -0.0150 31 1 2.2490 -1.6317 -1.1527 32 1 3.6491 -1.1202 -3.3979 33 1 1.9776 -1.5507 -3.8326 34 1 3.4091 1.4702 -8.6847 35 1 1.6036 -1.7110 1.3830 36 1 4.0341 0.1710 0.9244 37 1 4.0556 -1.6242 1.1924 38 1 4.2479 1.4275 2.7650 39 1 5.2813 0.1301 3.4107 40 1 3.8775 0.0278 5.4521 41 1 2.8441 1.3252 4.8064 42 1 4.7974 2.8508 4.7434 43 1 5.8314 1.5538 5.3890 44 1 3.3290 2.4846 6.9013 45 1 4.7149 4.4299 7.4507 46 1 6.2384 3.5636 6.9742 47 1 6.1549 2.7103 9.2699 48 1 4.3543 2.9355 9.3595 49 1 5.9415 0.9499 7.5782 50 1 4.2949 0.7214 8.3098 51 1 1.2474 -0.1045 3.2162 52 1 2.1091 1.2134 2.3123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329972072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -28.620473 kcal Electronic energy + Delta-G solvation = -26349.847542 eV Core-core repulsion = 22668.397077 eV Total energy + Delta-G solvation = -3681.450464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62435 -40.35772 -39.76578 -36.57837 -34.80427 -34.58332 -32.64434 -30.38564 -29.68367 -27.66632 -26.96131 -26.81647 -26.40981 -24.24965 -22.67551 -21.90964 -21.50111 -20.80440 -20.21506 -19.76967 -17.85855 -17.61151 -16.94386 -16.88226 -16.45318 -16.37189 -16.34732 -16.04868 -15.62471 -15.45744 -15.08395 -14.70595 -14.58212 -14.24396 -13.94915 -13.88810 -13.55195 -13.49431 -13.29898 -13.23004 -13.15697 -12.91659 -12.89125 -12.64902 -12.55281 -12.43935 -12.17036 -11.92230 -11.79592 -11.68950 -11.62596 -11.38070 -11.36782 -11.15894 -10.97572 -10.89551 -10.80456 -10.26666 -10.17022 -9.85275 -8.66277 -8.34913 -6.12631 1.27523 1.41216 1.47421 1.58503 1.64304 2.24569 2.29171 2.95123 2.99493 3.30232 3.44052 3.65468 3.68531 3.74639 3.82192 3.97444 4.00387 4.03298 4.14717 4.17962 4.24750 4.30755 4.37886 4.41498 4.44871 4.52101 4.52429 4.62216 4.69154 4.74512 4.77994 4.78501 4.81942 4.86300 4.88775 4.94946 4.99123 5.01286 5.09073 5.11110 5.19933 5.24241 5.33406 5.35099 5.42176 5.42217 5.47474 5.55156 5.66395 6.05235 6.20056 6.55160 7.06752 7.28742 8.74575 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.001575 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.997807 B =17778.867359 C =18327.550275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.061 0.939 4 N -0.707 5.707 5 C 0.536 3.464 6 O -0.566 6.566 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.912 5.912 13 Si 0.998 3.002 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.108 4.108 18 C 0.002 3.998 19 N -0.477 5.477 20 C 0.018 3.982 21 C -0.102 4.102 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.137 4.137 27 C 0.012 3.988 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.416 0.584 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -4.723 32.320 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.079 0.921 4 N -0.360 5.360 5 C 0.321 3.679 6 O -0.445 6.445 7 C -0.281 4.281 8 S 0.075 5.925 9 C -0.693 4.693 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.200 1.200 17 C -0.127 4.127 18 C -0.127 4.127 19 N -0.198 5.198 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.179 4.179 25 C -0.181 4.181 26 C -0.175 4.175 27 C -0.117 4.117 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.252 0.748 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.119 0.881 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.425 -3.191 32.645 32.803 hybrid contribution 0.861 -1.019 -1.608 2.089 sum 1.286 -4.210 31.037 31.347 Atomic orbital electron populations 1.22108 0.94346 1.03050 1.02058 1.20941 0.94758 0.96028 0.83208 0.92096 1.45790 1.67395 1.14587 1.08225 1.20025 0.76657 0.86547 0.84626 1.90686 1.50806 1.17808 1.85169 1.23379 1.05480 1.03173 0.96071 1.85572 1.86659 1.17427 1.02857 1.23244 1.50725 0.98508 0.96862 0.89934 1.26117 0.95077 0.97169 1.00732 1.70191 1.46935 1.15488 1.22208 0.84912 0.77825 0.78253 0.76998 1.18002 1.19941 1.19958 1.22969 0.95805 1.01246 0.92688 1.23807 0.96815 1.02508 0.89587 1.68950 1.03390 1.33511 1.13992 1.22717 0.97595 0.93800 0.96912 1.21391 0.99177 0.99063 0.94303 1.21506 0.99033 0.98272 0.95527 1.22573 0.99673 0.96908 0.93704 1.22970 1.00480 0.97567 0.96903 1.22826 1.02244 0.96660 0.96372 1.23010 1.01055 0.96491 0.96926 1.23801 0.94459 0.97530 0.95897 0.89810 0.94921 0.90693 0.74755 0.87315 0.87291 0.92016 0.85534 0.92527 0.88867 0.94714 0.90795 0.91440 0.92130 0.92358 0.91816 0.89400 0.91606 0.90210 0.91294 0.89934 0.90213 0.91533 0.88099 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.47 71.98 0.68 -2.44 16 2 C 0.16 3.27 2.34 44.99 0.11 3.38 16 3 H 0.06 1.64 7.43 -2.38 -0.02 1.62 16 4 N -0.71 -17.00 4.96 -442.56 -2.19 -19.19 16 5 C 0.54 19.38 7.81 87.65 0.68 20.06 16 6 O -0.57 -25.99 15.52 -3.02 -0.05 -26.04 16 7 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 8 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 9 C -0.55 -31.15 9.50 67.95 0.65 -30.51 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.78 5.49 84.86 0.47 1.25 16 12 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 13 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 C -0.11 -1.59 3.49 -10.45 -0.04 -1.62 16 18 C 0.00 0.03 7.17 83.57 0.60 0.63 16 19 N -0.48 -7.70 6.41 -927.87 -5.95 -13.65 16 20 C 0.02 0.29 4.82 86.30 0.42 0.70 16 21 C -0.10 -1.33 5.31 30.60 0.16 -1.16 16 22 C -0.11 -1.27 5.05 30.59 0.15 -1.11 16 23 C -0.11 -1.22 3.66 -10.21 -0.04 -1.26 16 24 C -0.14 -1.52 7.64 31.12 0.24 -1.28 16 25 C -0.14 -1.40 8.08 31.12 0.25 -1.15 16 26 C -0.14 -1.43 7.64 31.18 0.24 -1.20 16 27 C 0.01 0.18 6.56 83.57 0.55 0.73 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.42 7.19 8.60 -92.70 -0.80 6.39 16 32 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 33 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.14 7.73 -2.39 -0.02 1.12 16 37 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.03 0.59 7.56 -2.39 -0.02 0.58 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.77 7.85 -2.38 -0.02 0.75 16 44 H 0.09 0.99 8.13 -2.39 -0.02 0.97 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 47 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.84 7.90 -2.39 -0.02 0.82 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 52 H 0.07 1.05 7.56 -2.39 -0.02 1.03 16 Total: -1.00 -74.12 428.53 -1.41 -75.53 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.07 Total: 22.80 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.56 Total: -19.64 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -7.86 Total: -88.66 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -74.12 -1.41 -75.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329972072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.910 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds