Wall clock time and date at job start Sat Apr 11 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.87173 * 2 1 4 4 C 1.54330 * 109.88216 * 238.98730 * 2 1 3 5 5 H 1.08999 * 110.71686 * 336.92656 * 4 2 1 6 6 N 1.46898 * 110.71904 * 100.02544 * 4 2 1 7 7 C 1.46906 * 110.99888 * 205.00077 * 6 4 2 8 8 C 1.52999 * 109.46897 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.46623 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.53775 * 113.61849 * 274.13370 * 10 9 8 12 12 C 1.53952 * 87.02542 * 220.05090 * 11 10 9 13 13 C 1.53784 * 113.61221 * 176.52717 * 10 9 8 14 14 C 1.55158 * 102.94024 * 218.38682 * 4 2 1 15 15 C 1.54910 * 101.58096 * 35.50219 * 14 4 2 16 16 N 1.47023 * 109.88559 * 121.17650 * 2 1 3 17 17 C 1.34775 * 125.64897 * 298.32636 * 16 2 1 18 18 O 1.21281 * 120.00054 * 359.97438 * 17 16 2 19 19 C 1.50705 * 119.99984 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.46918 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99577 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00303 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99490 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00089 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99778 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46845 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47200 * 119.99659 * 25 23 21 28 28 H 1.48498 * 109.46810 * 240.00068 * 25 23 21 29 29 H 1.09005 * 109.47144 * 181.01342 * 1 2 3 30 30 H 1.09000 * 109.47316 * 301.01006 * 1 2 3 31 31 H 1.08997 * 109.47104 * 61.01180 * 1 2 3 32 32 H 1.00896 * 111.00084 * 328.95487 * 6 4 2 33 33 H 1.09000 * 109.47033 * 59.99886 * 7 6 4 34 34 H 1.09001 * 109.46544 * 299.99942 * 7 6 4 35 35 H 1.09000 * 109.47486 * 60.00024 * 8 7 6 36 36 H 1.09001 * 109.47362 * 299.99301 * 8 7 6 37 37 H 1.08993 * 109.46955 * 300.00075 * 9 8 7 38 38 H 1.09000 * 109.47050 * 59.99904 * 9 8 7 39 39 H 1.09001 * 112.84839 * 45.34013 * 10 9 8 40 40 H 1.08998 * 113.61412 * 334.57637 * 11 10 9 41 41 H 1.09002 * 113.61297 * 105.47408 * 11 10 9 42 42 H 1.08996 * 113.54056 * 270.81919 * 12 11 10 43 43 H 1.08998 * 113.74443 * 139.94369 * 12 11 10 44 44 H 1.09000 * 113.61541 * 254.53175 * 13 10 9 45 45 H 1.09004 * 113.61223 * 25.43675 * 13 10 9 46 46 H 1.09007 * 111.00276 * 153.57454 * 14 4 2 47 47 H 1.08999 * 111.00424 * 277.42859 * 14 4 2 48 48 H 1.09007 * 110.36343 * 204.14919 * 15 14 4 49 49 H 1.09002 * 110.45884 * 81.87872 * 15 14 4 50 50 H 1.08998 * 109.46632 * 299.99835 * 19 17 16 51 51 H 1.09000 * 109.47072 * 59.99396 * 19 17 16 52 52 H 0.97001 * 119.99764 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4565 0.2019 -2.2901 7 6 2.3871 -0.4191 -3.6196 8 6 2.8122 0.5981 -4.6804 9 6 2.7405 -0.0490 -6.0651 10 6 3.1651 0.9685 -7.1260 11 6 2.0171 1.8703 -7.6090 12 6 2.6038 1.7227 -9.0247 13 6 3.2092 0.3909 -8.5505 14 6 3.2876 -1.5132 -0.6946 15 6 2.8145 -1.8804 0.7341 16 7 2.0300 -0.7157 1.1829 17 6 1.8086 -0.3648 2.4652 18 8 1.1458 0.6187 2.7189 19 6 2.3844 -1.1945 3.5837 20 16 1.9152 -0.4707 5.1750 21 6 2.6976 -1.6075 6.2706 22 1 3.2570 -2.4418 5.8740 23 6 2.5947 -1.4306 7.6435 24 7 1.9133 -0.4135 8.1268 25 14 3.4247 -2.6354 8.8051 26 1 4.1230 -3.6821 8.0165 27 1 4.4092 -1.9113 9.6487 28 1 2.4012 -3.2707 9.6734 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5294 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 1.8956 1.0398 -2.2526 33 1 1.3653 -0.7439 -3.8160 34 1 3.0549 -1.2799 -3.6538 35 1 3.8341 0.9226 -4.4839 36 1 2.1447 1.4592 -4.6464 37 1 3.4082 -0.9098 -6.0988 38 1 1.7188 -0.3737 -6.2619 39 1 4.0651 1.5176 -6.8495 40 1 1.0309 1.4200 -7.4959 41 1 2.0665 2.8868 -7.2187 42 1 3.3498 2.4793 -9.2678 43 1 1.8492 1.6070 -9.8027 44 1 4.2197 0.2148 -8.9192 45 1 2.5495 -0.4647 -8.6954 46 1 3.4852 -2.4092 -1.2831 47 1 4.1654 -0.8678 -0.6617 48 1 3.6717 -2.0357 1.3893 49 1 2.1892 -2.7729 0.7107 50 1 1.9971 -2.2113 3.5183 51 1 3.4710 -1.2135 3.4997 52 1 1.8418 -0.2898 9.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331858508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:04 Heat of formation + Delta-G solvation = -53.172055 kcal Electronic energy + Delta-G solvation = -26562.775696 eV Core-core repulsion = 22880.260595 eV Total energy + Delta-G solvation = -3682.515101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30248 -39.84124 -38.99732 -36.68770 -34.59527 -33.96278 -32.56541 -31.69661 -29.90069 -27.86990 -27.64962 -26.44551 -25.69769 -23.99433 -23.44940 -22.06933 -21.52173 -20.41146 -20.17063 -19.45168 -18.10426 -17.45993 -16.90136 -16.88716 -16.52574 -16.38749 -16.12813 -15.72165 -15.66283 -15.28894 -14.82170 -14.71436 -14.53611 -14.28545 -14.06287 -13.83189 -13.55673 -13.32714 -13.27759 -13.20607 -13.15574 -13.03737 -12.91550 -12.72027 -12.57295 -12.45455 -12.18407 -12.07084 -11.93456 -11.73504 -11.67847 -11.52162 -11.35504 -11.16452 -10.95072 -10.90977 -10.78103 -10.28819 -9.72605 -9.39836 -8.68664 -8.35457 -6.14085 1.22995 1.41241 1.44192 1.56513 1.57097 2.04968 2.26481 2.98852 3.11534 3.20257 3.41306 3.63025 3.74242 3.82034 3.86312 3.89209 4.02346 4.02965 4.19579 4.21278 4.26554 4.28780 4.33139 4.40346 4.44189 4.51417 4.54245 4.65448 4.71158 4.74199 4.80526 4.87538 4.90301 4.92625 4.97921 5.00749 5.02340 5.08605 5.12621 5.16478 5.19014 5.25278 5.33799 5.41164 5.43262 5.47257 5.53027 5.69872 6.10142 6.19287 6.34872 6.43605 7.05772 7.12733 8.74169 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.001540 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.044668 B =18175.986568 C =18603.644941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 H 0.065 0.935 4 C 0.092 3.908 5 H 0.078 0.922 6 N -0.685 5.685 7 C 0.063 3.937 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.111 4.111 11 C -0.140 4.140 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.110 4.110 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.563 6.563 19 C -0.120 4.120 20 S -0.150 6.150 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.345 0.655 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -3.710 -35.244 35.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.083 0.917 4 C -0.019 4.019 5 H 0.096 0.904 6 N -0.317 5.317 7 C -0.066 4.066 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.129 4.129 11 C -0.177 4.177 12 C -0.184 4.184 13 C -0.176 4.176 14 C -0.149 4.149 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.334 3.666 18 O -0.441 6.441 19 C -0.271 4.271 20 S 0.077 5.923 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.124 0.876 51 H 0.123 0.877 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.718 -2.274 -34.595 34.776 hybrid contribution -0.016 -1.228 0.766 1.447 sum 2.702 -3.503 -33.830 34.118 Atomic orbital electron populations 1.22104 0.94718 1.02390 1.02420 1.21746 0.94374 0.96404 0.84765 0.91691 1.22515 0.96381 0.93576 0.89383 0.90441 1.60546 1.60134 1.07733 1.03315 1.22048 0.99789 0.97725 0.87040 1.21475 1.01890 0.97991 0.93434 1.21470 1.01513 0.97879 0.93149 1.22548 0.98779 0.97229 0.94377 1.23022 0.98297 0.99926 0.96502 1.22867 1.00504 0.98040 0.96971 1.22957 1.01298 0.97367 0.95982 1.22809 0.97657 1.01271 0.93140 1.22675 0.95671 0.88100 0.96836 1.48440 1.53033 1.29567 1.03652 1.19757 0.79641 0.84425 0.82739 1.90672 1.40997 1.28882 1.83552 1.23306 1.04583 1.02824 0.96355 1.85576 1.70953 1.40014 0.95742 1.23225 1.38364 1.14069 0.93681 0.89945 1.26134 0.95701 0.97958 0.99266 1.70191 1.40213 1.30307 1.14081 0.84894 0.77902 0.77699 0.77380 1.17966 1.19889 1.19865 0.91999 0.94329 0.89641 0.83609 0.94646 0.90558 0.91923 0.92294 0.91537 0.91770 0.89682 0.90086 0.91961 0.90250 0.91383 0.91536 0.89888 0.87446 0.90360 0.89858 0.89610 0.87636 0.87725 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.09 71.98 0.65 -3.12 16 2 C 0.13 3.12 2.97 45.34 0.13 3.25 16 3 H 0.07 1.78 7.89 -2.39 -0.02 1.76 16 4 C 0.09 1.44 2.81 46.11 0.13 1.57 16 5 H 0.08 1.05 7.53 -2.39 -0.02 1.03 16 6 N -0.69 -9.64 6.34 -485.43 -3.08 -12.71 16 7 C 0.06 0.66 5.55 86.30 0.48 1.14 16 8 C -0.11 -1.09 5.47 30.60 0.17 -0.92 16 9 C -0.10 -0.86 5.04 30.60 0.15 -0.71 16 10 C -0.11 -1.01 3.64 -10.27 -0.04 -1.05 16 11 C -0.14 -1.31 7.65 31.18 0.24 -1.07 16 12 C -0.15 -1.28 8.09 31.18 0.25 -1.03 16 13 C -0.14 -1.18 7.65 31.12 0.24 -0.94 16 14 C -0.11 -1.65 6.77 31.99 0.22 -1.43 16 15 C 0.09 1.76 6.69 86.86 0.58 2.34 16 16 N -0.61 -17.60 3.06 -788.04 -2.41 -20.01 16 17 C 0.55 21.76 7.66 87.66 0.67 22.43 16 18 O -0.56 -27.38 14.92 -3.03 -0.05 -27.43 16 19 C -0.12 -5.00 5.16 71.24 0.37 -4.63 16 20 S -0.15 -8.54 20.57 -56.49 -1.16 -9.71 16 21 C -0.55 -31.59 9.50 67.96 0.65 -30.95 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.81 5.49 84.86 0.47 1.28 16 24 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 25 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.04 1.23 6.91 -2.39 -0.02 1.21 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.34 4.82 8.31 -89.70 -0.75 4.07 16 33 H 0.04 0.35 8.08 -2.39 -0.02 0.33 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.52 7.87 -2.39 -0.02 0.51 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.73 7.92 -2.39 -0.02 0.71 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 0.65 8.10 -2.38 -0.02 0.63 16 46 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.63 7.48 -2.38 -0.02 1.61 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 51 H 0.10 4.01 7.85 -2.40 -0.02 3.99 16 52 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.29 424.39 1.10 -74.20 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.12 Total: 19.82 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.36 Total: -13.84 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.21 Total: -88.96 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -75.29 1.10 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.023 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds