Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87339 * 2 1 4 4 C 1.54323 * 109.88342 * 238.97997 * 2 1 3 5 5 H 1.09004 * 110.71764 * 144.41483 * 4 2 1 6 6 N 1.46894 * 110.87107 * 21.21407 * 4 2 1 7 7 C 1.46901 * 111.00061 * 159.93392 * 6 4 2 8 8 C 1.52991 * 109.47498 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47549 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47496 * 180.02562 * 9 8 7 11 11 C 1.53779 * 113.61482 * 274.13907 * 10 9 8 12 12 C 1.53946 * 87.02042 * 220.04599 * 11 10 9 13 13 C 1.53780 * 113.61327 * 176.53003 * 10 9 8 14 14 C 1.55160 * 102.94127 * 262.77576 * 4 2 1 15 15 C 1.54908 * 101.58344 * 324.49914 * 14 4 2 16 16 N 1.47192 * 109.94391 * 121.10492 * 2 1 3 17 17 C 1.34775 * 125.73680 * 300.50040 * 16 2 1 18 18 O 1.21283 * 119.99641 * 359.88379 * 17 16 2 19 19 C 1.50699 * 120.00079 * 179.88358 * 17 16 2 20 20 S 1.81000 * 109.47312 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00024 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99821 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00113 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99945 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46930 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47397 * 120.00139 * 25 23 21 28 28 H 1.48505 * 109.47215 * 240.00069 * 25 23 21 29 29 H 1.09001 * 109.47137 * 181.01671 * 1 2 3 30 30 H 1.08998 * 109.47444 * 301.01692 * 1 2 3 31 31 H 1.08997 * 109.47272 * 61.01974 * 1 2 3 32 32 H 1.00903 * 110.99840 * 283.88075 * 6 4 2 33 33 H 1.08996 * 109.46951 * 300.00278 * 7 6 4 34 34 H 1.09008 * 109.46798 * 59.99322 * 7 6 4 35 35 H 1.08996 * 109.47781 * 300.00424 * 8 7 6 36 36 H 1.09008 * 109.47115 * 60.00171 * 8 7 6 37 37 H 1.09004 * 109.47150 * 300.00707 * 9 8 7 38 38 H 1.09003 * 109.46627 * 60.00518 * 9 8 7 39 39 H 1.08998 * 112.84701 * 45.33633 * 10 9 8 40 40 H 1.09005 * 113.61215 * 334.57185 * 11 10 9 41 41 H 1.09001 * 113.61391 * 105.46701 * 11 10 9 42 42 H 1.09000 * 113.54190 * 270.81160 * 12 11 10 43 43 H 1.09000 * 113.67041 * 139.92913 * 12 11 10 44 44 H 1.09000 * 113.61499 * 254.52837 * 13 10 9 45 45 H 1.08999 * 113.61463 * 25.43221 * 13 10 9 46 46 H 1.08995 * 110.99972 * 206.42545 * 14 4 2 47 47 H 1.09000 * 111.03564 * 82.58736 * 14 4 2 48 48 H 1.09002 * 110.36632 * 155.84970 * 15 14 4 49 49 H 1.08995 * 110.36781 * 278.06207 * 15 14 4 50 50 H 1.09000 * 109.47019 * 300.00562 * 19 17 16 51 51 H 1.09006 * 109.46871 * 59.99615 * 19 17 16 52 52 H 0.97006 * 119.99748 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2437 5 1 2.9657 -0.2810 -1.6185 6 7 1.0296 -0.8001 -2.2943 7 6 1.6339 -1.0637 -3.6071 8 6 0.5376 -1.1115 -4.6730 9 6 1.1671 -1.3854 -6.0404 10 6 0.0707 -1.4325 -7.1065 11 6 -0.5858 -2.8153 -7.2543 12 6 -0.5793 -2.5670 -8.7736 13 6 0.6083 -1.6194 -8.5351 14 6 2.3519 -2.1686 -0.6952 15 6 2.8568 -1.8508 0.7344 16 7 2.0321 -0.7148 1.1847 17 6 1.7786 -0.3878 2.4674 18 8 1.0828 0.5723 2.7223 19 6 2.3598 -1.2152 3.5849 20 16 1.8426 -0.5271 5.1771 21 6 2.6409 -1.6540 6.2712 22 1 3.2313 -2.4662 5.8735 23 6 2.5101 -1.4986 7.6442 24 7 1.7892 -0.5096 8.1289 25 14 3.3558 -2.6938 8.8043 26 1 4.0988 -3.7083 8.0145 27 1 4.3043 -1.9524 9.6738 28 1 2.3372 -3.3704 9.6469 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8807 31 1 -0.3634 0.4979 -0.8990 32 1 0.3236 -1.4875 -2.0768 33 1 2.3408 -0.2697 -3.8476 34 1 2.1568 -2.0199 -3.5809 35 1 -0.1690 -1.9057 -4.4323 36 1 0.0144 -0.1555 -4.6993 37 1 1.8734 -0.5908 -6.2809 38 1 1.6904 -2.3412 -6.0144 39 1 -0.6460 -0.6166 -7.0129 40 1 0.0567 -3.6391 -6.9436 41 1 -1.5859 -2.8719 -6.8245 42 1 -1.4747 -2.0622 -9.1361 43 1 -0.3228 -3.4493 -9.3600 44 1 0.5707 -0.7120 -9.1379 45 1 1.5779 -2.1157 -8.5753 46 1 3.1270 -2.6601 -1.2831 47 1 1.4455 -2.7733 -0.6640 48 1 2.7087 -2.7099 1.3887 49 1 3.9095 -1.5696 0.7111 50 1 2.0041 -2.2420 3.4996 51 1 3.4478 -1.2010 3.5195 52 1 1.6982 -0.4008 9.0886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331858510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -49.125000 kcal Electronic energy + Delta-G solvation = -26672.125926 eV Core-core repulsion = 22989.786318 eV Total energy + Delta-G solvation = -3682.339607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.32630 -39.83572 -39.06797 -36.62495 -34.59799 -33.99123 -32.34975 -31.59706 -29.85390 -27.73307 -27.55438 -26.43853 -26.01714 -24.02267 -23.52022 -22.03481 -21.47727 -20.19817 -20.18877 -19.54038 -18.10255 -17.31438 -16.91005 -16.88359 -16.55333 -16.38956 -16.03557 -15.77355 -15.64240 -15.41437 -14.88406 -14.54505 -14.47543 -14.18851 -13.79341 -13.73705 -13.56153 -13.31772 -13.26984 -13.19324 -13.12362 -13.02351 -12.96572 -12.91483 -12.62337 -12.49589 -12.13667 -12.03451 -11.81994 -11.76738 -11.66385 -11.52847 -11.34697 -11.16778 -10.94204 -10.87154 -10.76727 -10.28727 -9.69851 -9.28431 -8.68969 -8.35661 -6.14444 1.23186 1.40905 1.44215 1.56334 1.58822 2.06865 2.26228 2.98551 3.10360 3.23725 3.52693 3.56765 3.76225 3.83297 3.88970 3.91867 4.03088 4.06024 4.17908 4.21819 4.26904 4.33543 4.36454 4.41373 4.45905 4.51089 4.66315 4.70799 4.74919 4.77855 4.82218 4.88446 4.91395 4.96972 4.98049 5.00112 5.08388 5.09164 5.10784 5.14213 5.17569 5.34829 5.37908 5.40641 5.48022 5.50900 5.54348 5.70579 6.10755 6.18872 6.42843 6.46420 7.05435 7.15414 8.73952 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034074 B = 0.001558 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.554015 B =17967.494641 C =18314.521920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.137 3.863 3 H 0.058 0.942 4 C 0.098 3.902 5 H 0.105 0.895 6 N -0.682 5.682 7 C 0.063 3.937 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.111 4.111 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.148 4.148 15 C 0.091 3.909 16 N -0.615 5.615 17 C 0.546 3.454 18 O -0.563 6.563 19 C -0.119 4.119 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.348 0.652 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -7.904 -35.090 36.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.076 0.924 4 C -0.013 4.013 5 H 0.123 0.877 6 N -0.313 5.313 7 C -0.066 4.066 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.129 4.129 11 C -0.176 4.176 12 C -0.184 4.184 13 C -0.177 4.177 14 C -0.188 4.188 15 C -0.031 4.031 16 N -0.350 5.350 17 C 0.334 3.666 18 O -0.441 6.441 19 C -0.270 4.270 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.122 0.878 51 H 0.123 0.877 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.428 -5.695 -34.622 35.090 hybrid contribution 1.109 -2.142 1.024 2.621 sum 1.537 -7.837 -33.598 34.534 Atomic orbital electron populations 1.21831 0.94667 1.01662 1.01847 1.21609 0.95218 0.95567 0.84240 0.92382 1.22425 0.94890 0.94427 0.89604 0.87729 1.60376 1.13800 1.55636 1.01498 1.22004 0.96843 1.00079 0.87665 1.21469 0.97720 1.01957 0.93650 1.21470 0.97320 1.01934 0.93294 1.22547 0.97913 0.97759 0.94730 1.23018 1.00935 0.97321 0.96367 1.22870 0.98909 0.99931 0.96708 1.22960 0.98410 0.99781 0.96521 1.23475 1.03227 0.97605 0.94487 1.22559 0.95433 0.88486 0.96646 1.48580 1.51190 1.31427 1.03801 1.19743 0.79925 0.84202 0.82764 1.90677 1.39709 1.30176 1.83531 1.23305 1.04521 1.02786 0.96408 1.85598 1.68568 1.42405 0.95779 1.23221 1.36579 1.15855 0.93699 0.89957 1.26138 0.95775 0.97912 0.99261 1.70198 1.39054 1.31496 1.14039 0.84891 0.77909 0.77667 0.77376 1.17970 1.19873 1.19868 0.92761 0.95503 0.89056 0.83223 0.91076 0.94114 0.92109 0.92118 0.91780 0.91602 0.89781 0.89974 0.91930 0.90298 0.91373 0.91657 0.89866 0.87137 0.90189 0.90072 0.89682 0.87757 0.87733 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.20 71.98 0.59 -3.11 16 2 C 0.14 3.36 3.48 45.31 0.16 3.52 16 3 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.10 1.45 3.10 46.11 0.14 1.60 16 5 H 0.10 1.38 7.89 -2.39 -0.02 1.37 16 6 N -0.68 -8.74 4.88 -485.46 -2.37 -11.11 16 7 C 0.06 0.60 5.54 86.30 0.48 1.07 16 8 C -0.11 -1.02 5.47 30.59 0.17 -0.85 16 9 C -0.10 -0.82 5.04 30.60 0.15 -0.67 16 10 C -0.11 -0.99 3.64 -10.27 -0.04 -1.02 16 11 C -0.14 -1.23 7.65 31.18 0.24 -1.00 16 12 C -0.15 -1.25 8.09 31.18 0.25 -1.00 16 13 C -0.14 -1.17 7.65 31.12 0.24 -0.94 16 14 C -0.15 -1.83 6.63 31.99 0.21 -1.62 16 15 C 0.09 1.71 6.69 86.85 0.58 2.29 16 16 N -0.61 -17.55 3.09 -787.66 -2.43 -19.98 16 17 C 0.55 21.82 7.65 87.66 0.67 22.49 16 18 O -0.56 -27.71 14.79 -3.04 -0.04 -27.75 16 19 C -0.12 -4.98 5.16 71.24 0.37 -4.61 16 20 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 21 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.80 5.49 84.86 0.47 1.26 16 24 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 25 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.05 1.30 7.89 -2.39 -0.02 1.28 16 30 H 0.03 0.91 6.78 -2.39 -0.02 0.90 16 31 H 0.09 2.05 7.41 -2.39 -0.02 2.03 16 32 H 0.35 4.27 7.57 -89.69 -0.68 3.59 16 33 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.04 0.32 8.13 -2.38 -0.02 0.30 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.07 0.49 7.88 -2.39 -0.02 0.47 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.69 7.92 -2.38 -0.02 0.67 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 45 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 1.00 7.82 -2.39 -0.02 0.98 16 48 H 0.08 1.51 7.48 -2.39 -0.02 1.50 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.10 3.97 7.85 -2.39 -0.02 3.95 16 51 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 52 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -75.85 421.02 1.82 -74.03 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.19 Total: 18.53 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 5.32 Total: -13.54 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.52 Total: -87.39 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.04 Total: -27.75 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -75.85 1.82 -74.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.901 kcal (2) G-P(sol) polarization free energy of solvation -75.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds