Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.78538 * 2 1 4 4 C 1.53237 * 109.63338 * 239.50994 * 2 1 3 5 5 N 1.46903 * 109.33743 * 186.46311 * 4 2 1 6 6 C 1.46904 * 110.99577 * 187.25476 * 5 4 2 7 7 C 1.50702 * 109.47305 * 45.69724 * 6 5 4 8 8 C 1.35311 * 126.14416 * 94.16715 * 7 6 5 9 9 C 1.39917 * 107.93468 * 180.24377 * 8 7 6 10 10 N 1.30873 * 108.24218 * 359.59026 * 9 8 7 11 11 N 1.35225 * 126.14160 * 274.16762 * 7 6 5 12 12 C 1.40179 * 126.05557 * 359.96698 * 11 7 6 13 13 C 1.38847 * 120.06498 * 315.41467 * 12 11 7 14 14 C 1.38120 * 119.92826 * 179.72163 * 13 12 11 15 15 C 1.38273 * 120.06958 * 0.55746 * 14 13 12 16 16 C 1.38279 * 120.13532 * 359.71823 * 15 14 13 17 17 C 1.38120 * 120.06424 * 0.02562 * 16 15 14 18 18 C 1.46895 * 111.27090 * 63.10406 * 5 4 2 19 19 C 1.53234 * 109.34064 * 296.89559 * 18 5 4 20 20 H 1.09002 * 109.62678 * 294.11428 * 19 18 5 21 21 C 1.53001 * 109.63020 * 173.54205 * 19 18 5 22 22 N 1.47075 * 108.52349 * 53.83140 * 19 18 5 23 23 C 1.36933 * 120.88525 * 128.79899 * 22 19 18 24 24 H 1.08005 * 119.99624 * 309.01070 * 23 22 19 25 25 C 1.38809 * 120.00708 * 129.01173 * 23 22 19 26 26 N 1.31618 * 119.99590 * 340.39555 * 25 23 22 27 27 Si 1.86796 * 120.00318 * 160.39782 * 25 23 22 28 28 H 1.48502 * 109.47204 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47226 * 119.99819 * 27 25 23 30 30 H 1.48501 * 109.47052 * 240.00268 * 27 25 23 31 31 H 1.09000 * 109.47647 * 308.24005 * 1 2 3 32 32 H 1.09004 * 109.46860 * 68.24018 * 1 2 3 33 33 H 1.09004 * 109.47219 * 188.23242 * 1 2 3 34 34 H 1.08999 * 109.49071 * 66.50156 * 4 2 1 35 35 H 1.08998 * 109.49136 * 306.41805 * 4 2 1 36 36 H 1.09004 * 109.47076 * 285.69637 * 6 5 4 37 37 H 1.08998 * 109.46897 * 165.69820 * 6 5 4 38 38 H 1.08002 * 126.03390 * 359.97438 * 8 7 6 39 39 H 1.08005 * 125.88493 * 179.76436 * 9 8 7 40 40 H 1.07994 * 120.03279 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.96044 * 180.27784 * 14 13 12 42 42 H 1.08002 * 119.93271 * 179.69614 * 15 14 13 43 43 H 1.07997 * 119.96728 * 179.97438 * 16 15 14 44 44 H 1.08004 * 120.03128 * 179.97438 * 17 16 15 45 45 H 1.09002 * 109.49054 * 56.85487 * 18 5 4 46 46 H 1.08999 * 109.49135 * 176.92852 * 18 5 4 47 47 H 1.08998 * 109.47204 * 59.98972 * 21 19 18 48 48 H 1.08999 * 109.47214 * 180.02562 * 21 19 18 49 49 H 1.09007 * 109.47062 * 299.99779 * 21 19 18 50 50 H 0.97003 * 119.99814 * 175.08702 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7323 -1.2437 5 7 3.5056 -0.8644 -1.1605 6 6 4.0570 -1.4062 -2.4097 7 6 3.4377 -0.6924 -3.5836 8 6 3.9505 0.3832 -4.2247 9 6 3.0651 0.7371 -5.2486 10 7 2.0604 -0.1015 -5.2295 11 7 2.2696 -1.0118 -4.1854 12 6 1.4190 -2.0673 -3.8282 13 6 1.9458 -3.3215 -3.5502 14 6 1.1056 -4.3580 -3.1929 15 6 -0.2597 -4.1505 -3.1233 16 6 -0.7878 -2.9040 -3.4051 17 6 0.0477 -1.8622 -3.7578 18 6 3.9016 -1.6870 -0.0097 19 6 3.4628 -0.9938 1.2845 20 1 4.0176 -0.0637 1.4080 21 6 3.7265 -1.9161 2.4764 22 7 2.0240 -0.7027 1.1940 23 6 1.1669 -1.0763 2.1945 24 1 1.1715 -2.0935 2.5576 25 6 0.2923 -0.1479 2.7420 26 7 0.5264 1.1396 2.6010 27 14 -1.2168 -0.7256 3.6790 28 1 -1.2515 -2.2101 3.6946 29 1 -1.1590 -0.2167 5.0729 30 1 -2.4401 -0.2094 3.0139 31 1 -0.3634 0.6361 0.8071 32 1 -0.3633 0.3810 -0.9545 33 1 -0.3634 -1.0171 0.1472 34 1 1.7812 -0.1639 -2.1356 35 1 1.5925 -1.7226 -1.2960 36 1 3.8342 -2.4714 -2.4734 37 1 5.1370 -1.2595 -2.4238 38 1 4.8773 0.8833 -3.9852 39 1 3.1905 1.5588 -5.9381 40 1 3.0116 -3.4851 -3.6084 41 1 1.5152 -5.3326 -2.9722 42 1 -0.9150 -4.9638 -2.8485 43 1 -1.8546 -2.7451 -3.3503 44 1 -0.3654 -0.8890 -3.9783 45 1 3.4233 -2.6640 -0.0793 46 1 4.9845 -1.8111 -0.0069 47 1 4.7910 -2.1442 2.5308 48 1 3.4131 -1.4209 3.3954 49 1 3.1629 -2.8408 2.3521 50 1 -0.1202 1.7881 2.9209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332724466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = 157.632602 kcal Electronic energy + Delta-G solvation = -31746.087605 eV Core-core repulsion = 27969.562479 eV Total energy + Delta-G solvation = -3776.525125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68764 -38.97603 -38.34885 -35.15736 -33.46186 -32.77531 -31.71054 -31.06245 -30.33931 -28.89466 -27.70017 -26.38744 -25.82214 -24.38447 -23.24449 -22.94405 -21.68990 -20.81830 -20.34217 -19.68506 -19.06916 -17.39793 -16.55121 -16.22722 -15.89576 -15.19113 -15.05288 -14.68104 -14.51183 -14.39260 -14.23098 -13.84951 -13.71695 -13.52591 -13.36781 -13.17914 -12.82133 -12.69856 -12.45332 -12.02423 -11.83527 -11.62011 -11.51267 -11.36510 -11.22988 -11.04888 -10.81922 -10.66787 -10.61662 -10.44460 -10.39434 -10.12800 -9.92016 -9.80253 -9.68819 -9.43397 -9.07822 -8.90009 -8.21968 -8.08063 -7.78033 -6.37303 -5.69171 -3.48277 0.92393 1.26141 2.02296 2.45639 2.86292 3.31715 3.42058 3.43784 3.63491 4.39920 4.47326 4.60471 4.66825 4.77503 4.90685 4.96901 5.12851 5.26019 5.27244 5.34370 5.42145 5.43138 5.61809 5.69243 5.77368 5.83427 5.87751 5.89341 6.08647 6.14993 6.17395 6.22835 6.26450 6.27728 6.38868 6.39382 6.42680 6.48497 6.60073 6.63586 6.73379 6.74850 6.87091 6.98571 7.14134 7.20748 7.24558 7.49251 7.54434 7.67628 7.71764 7.77520 7.89749 8.61822 9.23335 9.78236 10.55762 11.21082 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004675 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.246748 B = 5987.808908 C = 6715.781531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.204 3.796 3 H 0.033 0.967 4 C 0.043 3.957 5 N -0.524 5.524 6 C 0.106 3.894 7 C 0.104 3.896 8 C -0.252 4.252 9 C 0.051 3.949 10 N -0.293 5.293 11 N -0.325 5.325 12 C 0.160 3.840 13 C -0.130 4.130 14 C -0.100 4.100 15 C -0.118 4.118 16 C -0.098 4.098 17 C -0.103 4.103 18 C 0.049 3.951 19 C 0.172 3.828 20 H 0.033 0.967 21 C -0.129 4.129 22 N -0.578 5.578 23 C -0.256 4.256 24 H 0.052 0.948 25 C 0.033 3.967 26 N -0.873 5.873 27 Si 0.879 3.121 28 H -0.274 1.274 29 H -0.288 1.288 30 H -0.286 1.286 31 H 0.091 0.909 32 H 0.016 0.984 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.152 0.848 39 H 0.186 0.814 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -7.587 -13.200 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 H 0.050 0.950 4 C -0.086 4.086 5 N -0.248 5.248 6 C -0.023 4.023 7 C -0.021 4.021 8 C -0.281 4.281 9 C -0.136 4.136 10 N -0.111 5.111 11 N -0.103 5.103 12 C 0.069 3.931 13 C -0.150 4.150 14 C -0.119 4.119 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.080 4.080 19 C 0.066 3.934 20 H 0.051 0.949 21 C -0.187 4.187 22 N -0.302 5.302 23 C -0.386 4.386 24 H 0.070 0.930 25 C -0.169 4.169 26 N -0.514 5.514 27 Si 0.707 3.293 28 H -0.199 1.199 29 H -0.215 1.215 30 H -0.212 1.212 31 H 0.109 0.891 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.411 -7.353 -13.524 15.767 hybrid contribution -0.405 -0.546 0.620 0.920 sum 3.006 -7.899 -12.904 15.426 Atomic orbital electron populations 1.22013 0.95827 1.02205 0.99923 1.20212 0.92715 0.93653 0.83611 0.94963 1.23004 0.85764 0.99327 1.00542 1.62122 1.12381 1.49747 1.00571 1.20993 0.99465 0.95522 0.86354 1.21065 0.87269 0.97751 0.95986 1.21264 1.04681 1.00995 1.01138 1.23936 0.92120 0.98583 0.98962 1.77463 1.23516 1.03247 1.06889 1.45799 1.16282 1.23550 1.24701 1.17308 0.89459 0.85373 1.00943 1.21071 1.00457 0.91118 1.02344 1.20957 0.93428 0.98516 0.99003 1.21228 0.95285 0.97486 0.99638 1.21069 1.00048 0.92436 0.98152 1.21039 0.91459 1.00214 0.99588 1.22733 0.98630 0.94515 0.92095 1.20524 0.87494 0.95105 0.90280 0.94945 1.21695 0.98020 0.99574 0.99455 1.44055 1.00567 1.68120 1.17507 1.18717 1.14976 0.92500 1.12379 0.93026 1.25452 1.00424 0.95050 0.95965 1.70187 1.33561 0.99888 1.47740 0.86645 0.84053 0.78857 0.79770 1.19903 1.21469 1.21220 0.89066 0.96494 0.93544 0.92503 0.95397 0.93747 0.88588 0.83049 0.79713 0.85518 0.85259 0.85458 0.85106 0.85184 0.95385 0.91990 0.94567 0.91581 0.93301 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 7.91 37.16 0.29 -3.04 16 2 C 0.20 4.84 3.12 -67.49 -0.21 4.63 16 3 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.04 0.86 3.45 -3.70 -0.01 0.85 16 5 N -0.52 -9.42 4.77 -235.76 -1.13 -10.55 16 6 C 0.11 1.54 5.39 -4.97 -0.03 1.52 16 7 C 0.10 1.57 4.74 -82.14 -0.39 1.18 16 8 C -0.25 -3.46 10.72 -40.00 -0.43 -3.89 16 9 C 0.05 0.67 12.03 -17.33 -0.21 0.46 16 10 N -0.29 -4.62 12.44 30.64 0.38 -4.24 16 11 N -0.33 -5.14 2.96 -6.98 -0.02 -5.16 16 12 C 0.16 2.42 3.71 -83.59 -0.31 2.11 16 13 C -0.13 -1.73 8.25 -39.40 -0.32 -2.05 16 14 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 15 C -0.12 -1.36 10.04 -39.55 -0.40 -1.75 16 16 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 17 C -0.10 -1.51 9.87 -39.40 -0.39 -1.90 16 18 C 0.05 0.88 4.87 -3.71 -0.02 0.87 16 19 C 0.17 3.67 3.66 -67.50 -0.25 3.42 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.13 -2.48 8.17 37.16 0.30 -2.18 16 22 N -0.58 -14.13 2.83 -157.01 -0.44 -14.57 16 23 C -0.26 -6.71 6.85 -15.06 -0.10 -6.81 16 24 H 0.05 1.38 7.07 -52.48 -0.37 1.01 16 25 C 0.03 0.87 3.33 -17.43 -0.06 0.81 16 26 N -0.87 -24.67 11.55 55.49 0.64 -24.03 16 27 Si 0.88 20.86 29.60 -169.99 -5.03 15.83 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.09 2.38 4.84 -51.93 -0.25 2.13 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 1.10 7.65 -51.93 -0.40 0.70 16 34 H 0.06 1.17 5.49 -51.93 -0.29 0.88 16 35 H 0.03 0.58 7.02 -51.93 -0.36 0.22 16 36 H 0.04 0.62 5.03 -51.93 -0.26 0.36 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.19 1.74 8.06 -52.48 -0.42 1.31 16 40 H 0.13 1.55 6.29 -52.49 -0.33 1.22 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 49 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 50 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -30.56 383.91 -10.82 -41.38 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.68 Total: 4.54 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.32 Total: -8.98 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.57 Total: -58.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.56 -10.82 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332724466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.008 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds