Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.78538 * 2 1 4 4 C 1.53237 * 109.63338 * 239.50994 * 2 1 3 5 5 N 1.46903 * 109.33743 * 186.46311 * 4 2 1 6 6 C 1.46904 * 110.99577 * 187.25476 * 5 4 2 7 7 C 1.50702 * 109.47305 * 45.69724 * 6 5 4 8 8 C 1.35311 * 126.14416 * 94.16715 * 7 6 5 9 9 C 1.39917 * 107.93468 * 180.24377 * 8 7 6 10 10 N 1.30873 * 108.24218 * 359.59026 * 9 8 7 11 11 N 1.35225 * 126.14160 * 274.16762 * 7 6 5 12 12 C 1.40179 * 126.05557 * 359.96698 * 11 7 6 13 13 C 1.38847 * 120.06498 * 315.41467 * 12 11 7 14 14 C 1.38120 * 119.92826 * 179.72163 * 13 12 11 15 15 C 1.38273 * 120.06958 * 0.55746 * 14 13 12 16 16 C 1.38279 * 120.13532 * 359.71823 * 15 14 13 17 17 C 1.38120 * 120.06424 * 0.02562 * 16 15 14 18 18 C 1.46895 * 111.27090 * 63.10406 * 5 4 2 19 19 C 1.53234 * 109.34064 * 296.89559 * 18 5 4 20 20 H 1.09002 * 109.62678 * 294.11428 * 19 18 5 21 21 C 1.53001 * 109.63020 * 173.54205 * 19 18 5 22 22 N 1.47075 * 108.52349 * 53.83140 * 19 18 5 23 23 C 1.36933 * 120.88525 * 128.79899 * 22 19 18 24 24 H 1.08005 * 119.99624 * 309.01070 * 23 22 19 25 25 C 1.38809 * 120.00708 * 129.01173 * 23 22 19 26 26 N 1.31618 * 119.99590 * 340.39555 * 25 23 22 27 27 Si 1.86796 * 120.00318 * 160.39782 * 25 23 22 28 28 H 1.48502 * 109.47204 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47226 * 119.99819 * 27 25 23 30 30 H 1.48501 * 109.47052 * 240.00268 * 27 25 23 31 31 H 1.09000 * 109.47647 * 308.24005 * 1 2 3 32 32 H 1.09004 * 109.46860 * 68.24018 * 1 2 3 33 33 H 1.09004 * 109.47219 * 188.23242 * 1 2 3 34 34 H 1.08999 * 109.49071 * 66.50156 * 4 2 1 35 35 H 1.08998 * 109.49136 * 306.41805 * 4 2 1 36 36 H 1.09004 * 109.47076 * 285.69637 * 6 5 4 37 37 H 1.08998 * 109.46897 * 165.69820 * 6 5 4 38 38 H 1.08002 * 126.03390 * 359.97438 * 8 7 6 39 39 H 1.08005 * 125.88493 * 179.76436 * 9 8 7 40 40 H 1.07994 * 120.03279 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.96044 * 180.27784 * 14 13 12 42 42 H 1.08002 * 119.93271 * 179.69614 * 15 14 13 43 43 H 1.07997 * 119.96728 * 179.97438 * 16 15 14 44 44 H 1.08004 * 120.03128 * 179.97438 * 17 16 15 45 45 H 1.09002 * 109.49054 * 56.85487 * 18 5 4 46 46 H 1.08999 * 109.49135 * 176.92852 * 18 5 4 47 47 H 1.08998 * 109.47204 * 59.98972 * 21 19 18 48 48 H 1.08999 * 109.47214 * 180.02562 * 21 19 18 49 49 H 1.09007 * 109.47062 * 299.99779 * 21 19 18 50 50 H 0.97003 * 119.99814 * 175.08702 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7323 -1.2437 5 7 3.5056 -0.8644 -1.1605 6 6 4.0570 -1.4062 -2.4097 7 6 3.4377 -0.6924 -3.5836 8 6 3.9505 0.3832 -4.2247 9 6 3.0651 0.7371 -5.2486 10 7 2.0604 -0.1015 -5.2295 11 7 2.2696 -1.0118 -4.1854 12 6 1.4190 -2.0673 -3.8282 13 6 1.9458 -3.3215 -3.5502 14 6 1.1056 -4.3580 -3.1929 15 6 -0.2597 -4.1505 -3.1233 16 6 -0.7878 -2.9040 -3.4051 17 6 0.0477 -1.8622 -3.7578 18 6 3.9016 -1.6870 -0.0097 19 6 3.4628 -0.9938 1.2845 20 1 4.0176 -0.0637 1.4080 21 6 3.7265 -1.9161 2.4764 22 7 2.0240 -0.7027 1.1940 23 6 1.1669 -1.0763 2.1945 24 1 1.1715 -2.0935 2.5576 25 6 0.2923 -0.1479 2.7420 26 7 0.5264 1.1396 2.6010 27 14 -1.2168 -0.7256 3.6790 28 1 -1.2515 -2.2101 3.6946 29 1 -1.1590 -0.2167 5.0729 30 1 -2.4401 -0.2094 3.0139 31 1 -0.3634 0.6361 0.8071 32 1 -0.3633 0.3810 -0.9545 33 1 -0.3634 -1.0171 0.1472 34 1 1.7812 -0.1639 -2.1356 35 1 1.5925 -1.7226 -1.2960 36 1 3.8342 -2.4714 -2.4734 37 1 5.1370 -1.2595 -2.4238 38 1 4.8773 0.8833 -3.9852 39 1 3.1905 1.5588 -5.9381 40 1 3.0116 -3.4851 -3.6084 41 1 1.5152 -5.3326 -2.9722 42 1 -0.9150 -4.9638 -2.8485 43 1 -1.8546 -2.7451 -3.3503 44 1 -0.3654 -0.8890 -3.9783 45 1 3.4233 -2.6640 -0.0793 46 1 4.9845 -1.8111 -0.0069 47 1 4.7910 -2.1442 2.5308 48 1 3.4131 -1.4209 3.3954 49 1 3.1629 -2.8408 2.3521 50 1 -0.1202 1.7881 2.9209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332724466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = 140.263155 kcal Electronic energy + Delta-G solvation = -31746.840800 eV Core-core repulsion = 27969.562479 eV Total energy + Delta-G solvation = -3777.278321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.76548 -40.05455 -39.83889 -36.77794 -34.73166 -34.24967 -33.43982 -32.21352 -31.59910 -29.89277 -29.47904 -27.84662 -27.41627 -26.15998 -24.29109 -23.96563 -23.16778 -22.17327 -21.73144 -20.92917 -20.73249 -18.48808 -18.15275 -17.47751 -17.28701 -16.68911 -16.35989 -16.14282 -16.06117 -15.65072 -15.59489 -15.27252 -14.90546 -14.79194 -14.64075 -14.47183 -14.33385 -13.90199 -13.67835 -13.39062 -13.35280 -13.32836 -13.05892 -12.74748 -12.65230 -12.51467 -12.39412 -12.28287 -12.20431 -12.13788 -11.97264 -11.71457 -11.57964 -11.53689 -11.22745 -10.90258 -10.11958 -10.05742 -9.99820 -9.29070 -9.14891 -8.39813 -7.69351 -5.55304 -0.07689 0.29476 0.95778 1.41107 1.43122 1.46514 1.54450 1.82723 2.49198 2.67093 3.05506 3.25083 3.46526 3.56149 3.71236 3.80868 3.95401 4.01962 4.15965 4.23930 4.26240 4.35241 4.38274 4.44866 4.51042 4.53704 4.62874 4.66280 4.68247 4.71770 4.80944 4.83818 4.87112 4.91232 4.93564 4.93981 4.98601 5.17055 5.23084 5.26607 5.32218 5.45197 5.47053 5.54267 5.66562 5.68593 5.72356 5.77597 5.79258 6.12094 6.14281 6.24847 6.56667 6.65766 7.23746 7.82917 8.56078 9.16208 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004675 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.246748 B = 5987.808908 C = 6715.781531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.204 3.796 3 H -0.011 1.011 4 C 0.075 3.925 5 N -0.536 5.536 6 C 0.111 3.889 7 C 0.083 3.917 8 C -0.254 4.254 9 C 0.052 3.948 10 N -0.326 5.326 11 N -0.333 5.333 12 C 0.137 3.863 13 C -0.139 4.139 14 C -0.099 4.099 15 C -0.119 4.119 16 C -0.105 4.105 17 C -0.128 4.128 18 C 0.062 3.938 19 C 0.162 3.838 20 H 0.007 0.993 21 C -0.118 4.118 22 N -0.591 5.591 23 C -0.253 4.253 24 H 0.050 0.950 25 C -0.008 4.008 26 N -0.909 5.909 27 Si 0.932 3.068 28 H -0.264 1.264 29 H -0.292 1.292 30 H -0.288 1.288 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.173 0.827 39 H 0.219 0.781 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.113 0.887 45 H 0.028 0.972 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.048 0.952 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -9.920 -13.878 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.007 0.993 4 C -0.054 4.054 5 N -0.261 5.261 6 C -0.017 4.017 7 C -0.041 4.041 8 C -0.283 4.283 9 C -0.134 4.134 10 N -0.145 5.145 11 N -0.111 5.111 12 C 0.047 3.953 13 C -0.159 4.159 14 C -0.117 4.117 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.147 4.147 18 C -0.067 4.067 19 C 0.056 3.944 20 H 0.025 0.975 21 C -0.176 4.176 22 N -0.316 5.316 23 C -0.384 4.384 24 H 0.067 0.933 25 C -0.206 4.206 26 N -0.552 5.552 27 Si 0.760 3.240 28 H -0.188 1.188 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.190 0.810 39 H 0.236 0.764 40 H 0.154 0.846 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.165 0.835 44 H 0.131 0.869 45 H 0.047 0.953 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.608 -9.713 -14.211 17.819 hybrid contribution -0.725 0.205 0.795 1.095 sum 3.883 -9.508 -13.416 16.896 Atomic orbital electron populations 1.21835 0.96104 1.01209 0.99627 1.20081 0.92619 0.92012 0.85486 0.99290 1.22452 0.87346 0.97926 0.97716 1.62040 1.10761 1.50886 1.02421 1.21073 1.00598 0.95880 0.84197 1.21332 0.87590 0.98607 0.96582 1.21640 1.05377 1.00481 1.00800 1.24552 0.91099 0.98639 0.99115 1.77422 1.24945 1.04264 1.07898 1.45920 1.16579 1.23808 1.24789 1.17602 0.89639 0.86083 1.02005 1.21281 1.01256 0.90833 1.02563 1.21376 0.93434 0.99306 0.97578 1.21621 0.95870 0.97685 0.98501 1.21358 1.00815 0.92533 0.97627 1.21086 0.92039 1.00303 1.01320 1.22557 1.00612 0.93543 0.90006 1.20733 0.85355 0.94947 0.93378 0.97497 1.21573 1.00489 0.98457 0.97051 1.44294 1.01981 1.67934 1.17438 1.18863 1.15114 0.92242 1.12161 0.93273 1.26005 1.02676 0.94963 0.96993 1.70296 1.34361 1.00920 1.49584 0.85788 0.81114 0.78854 0.78252 1.18791 1.21847 1.21400 0.91553 0.95185 0.93954 0.93208 0.96060 0.92622 0.85831 0.80979 0.76414 0.84602 0.82284 0.82571 0.83470 0.86881 0.95328 0.88396 0.90677 0.94410 0.93334 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 7.91 71.98 0.57 -5.71 16 2 C 0.20 9.93 3.12 44.96 0.14 10.07 16 3 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 4 C 0.08 3.01 3.45 86.38 0.30 3.30 16 5 N -0.54 -18.46 4.77 -899.82 -4.29 -22.75 16 6 C 0.11 2.94 5.39 85.56 0.46 3.41 16 7 C 0.08 2.40 4.74 41.36 0.20 2.60 16 8 C -0.25 -6.54 10.72 22.00 0.24 -6.30 16 9 C 0.05 1.32 12.03 85.24 1.03 2.34 16 10 N -0.33 -10.26 12.44 -56.97 -0.71 -10.97 16 11 N -0.33 -10.38 2.96 -176.00 -0.52 -10.90 16 12 C 0.14 4.09 3.71 38.09 0.14 4.23 16 13 C -0.14 -3.47 8.25 22.39 0.18 -3.29 16 14 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 15 C -0.12 -2.45 10.04 22.29 0.22 -2.22 16 16 C -0.10 -2.54 10.04 22.25 0.22 -2.32 16 17 C -0.13 -3.78 9.87 22.38 0.22 -3.56 16 18 C 0.06 2.05 4.87 86.38 0.42 2.47 16 19 C 0.16 6.77 3.66 44.96 0.16 6.94 16 20 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 21 C -0.12 -4.35 8.17 71.98 0.59 -3.76 16 22 N -0.59 -29.23 2.83 -650.65 -1.84 -31.08 16 23 C -0.25 -13.39 6.85 84.03 0.58 -12.82 16 24 H 0.05 2.61 7.07 -2.91 -0.02 2.59 16 25 C -0.01 -0.43 3.33 84.86 0.28 -0.15 16 26 N -0.91 -53.07 11.55 21.65 0.25 -52.82 16 27 Si 0.93 43.36 29.60 68.60 2.03 45.39 16 28 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 29 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 30 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 31 H 0.07 3.58 4.84 -2.39 -0.01 3.57 16 32 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.04 2.03 7.65 -2.38 -0.02 2.01 16 34 H 0.05 2.07 5.49 -2.39 -0.01 2.05 16 35 H 0.02 0.88 7.02 -2.39 -0.02 0.86 16 36 H 0.06 1.38 5.03 -2.38 -0.01 1.37 16 37 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.22 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.14 3.02 6.29 -2.91 -0.02 3.00 16 41 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 46 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.58 7.69 -2.39 -0.02 1.56 16 49 H 0.05 1.78 7.54 -2.38 -0.02 1.76 16 50 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 Total: -1.00 -68.88 383.91 2.01 -66.86 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.93 Total: 22.86 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.18 Total: -6.59 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.12 Total: -128.52 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.88 2.01 -66.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332724466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.126 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds