Wall clock time and date at job start Sat Apr 11 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50701 * 120.00523 * 2 1 4 4 C 1.31006 * 119.99814 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99719 * 353.79232 * 4 2 1 6 6 N 1.46901 * 109.46793 * 236.18526 * 5 4 2 7 7 C 1.46843 * 111.00430 * 170.00030 * 6 5 4 8 8 C 1.53035 * 109.52793 * 185.84208 * 7 6 5 9 9 C 1.53126 * 109.27607 * 300.81914 * 8 7 6 10 10 C 1.52997 * 109.52014 * 177.56082 * 9 8 7 11 11 H 1.09000 * 109.47150 * 300.12398 * 10 9 8 12 12 C 1.52998 * 109.47255 * 60.13104 * 10 9 8 13 13 N 1.46504 * 109.46874 * 180.12656 * 10 9 8 14 14 C 1.34772 * 120.00169 * 154.99739 * 13 10 9 15 15 O 1.21279 * 120.00068 * 0.02562 * 14 13 10 16 16 C 1.50696 * 120.00176 * 179.97438 * 14 13 10 17 17 S 1.80998 * 109.47329 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00254 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00140 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00257 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00104 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46955 * 59.99326 * 22 20 18 24 24 H 1.48492 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46941 * 299.99868 * 22 20 18 26 26 C 1.53119 * 109.21362 * 57.61887 * 9 8 7 27 27 C 1.46848 * 111.00018 * 294.21309 * 6 5 4 28 28 H 1.08996 * 109.47209 * 265.04494 * 1 2 3 29 29 H 1.09007 * 109.46585 * 25.04326 * 1 2 3 30 30 H 1.09002 * 109.47321 * 145.03772 * 1 2 3 31 31 H 1.09000 * 109.47115 * 269.99960 * 3 2 1 32 32 H 1.09001 * 109.46419 * 29.99921 * 3 2 1 33 33 H 1.09004 * 109.47302 * 149.99855 * 3 2 1 34 34 H 1.07996 * 119.99986 * 173.77965 * 4 2 1 35 35 H 1.08999 * 109.47351 * 116.18943 * 5 4 2 36 36 H 1.08998 * 109.47564 * 356.18170 * 5 4 2 37 37 H 1.08996 * 109.46211 * 65.81798 * 7 6 5 38 38 H 1.09008 * 109.44943 * 305.85165 * 7 6 5 39 39 H 1.09000 * 109.50167 * 180.87955 * 8 7 6 40 40 H 1.08997 * 109.53639 * 60.77683 * 8 7 6 41 41 H 1.09000 * 109.51865 * 297.68659 * 9 8 7 42 42 H 1.09000 * 109.46607 * 299.99527 * 12 10 9 43 43 H 1.08999 * 109.47024 * 179.97438 * 12 10 9 44 44 H 1.08991 * 109.47446 * 59.99675 * 12 10 9 45 45 H 0.97008 * 119.99873 * 335.00041 * 13 10 9 46 46 H 1.09000 * 109.47692 * 300.00773 * 16 14 13 47 47 H 1.09008 * 109.46711 * 60.00441 * 16 14 13 48 48 H 0.96998 * 119.99908 * 180.02562 * 21 20 18 49 49 H 1.09010 * 109.49569 * 62.31877 * 26 9 8 50 50 H 1.08995 * 109.50348 * 182.43486 * 26 9 8 51 51 H 1.09008 * 109.46161 * 294.17489 * 27 6 5 52 52 H 1.08996 * 109.46796 * 54.15066 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1619 -1.1346 0.0005 5 6 1.4149 -2.4357 0.1422 6 7 1.9456 -3.1823 1.2907 7 6 1.0952 -4.3372 1.6061 8 6 1.5936 -5.0039 2.8902 9 6 3.0447 -5.4528 2.6964 10 6 3.5684 -6.0656 3.9968 11 1 3.5195 -5.3234 4.7936 12 6 2.7098 -7.2749 4.3727 13 7 4.9576 -6.4919 3.8110 14 6 5.7821 -6.5840 4.8731 15 8 5.3738 -6.3146 5.9829 16 6 7.2109 -7.0231 4.6821 17 16 8.0540 -7.0473 6.2835 18 6 9.6561 -7.5787 5.7780 19 1 9.8546 -7.7790 4.7354 20 6 10.6627 -7.7409 6.7197 21 7 10.4207 -7.4973 7.9905 22 14 12.3610 -8.3049 6.1839 23 1 12.9259 -7.3271 5.2195 24 1 13.2488 -8.3986 7.3705 25 1 12.2585 -9.6369 5.5353 26 6 3.9012 -4.2405 2.3205 27 6 3.3349 -3.5949 1.0538 28 1 -0.3633 -0.0888 1.0238 29 1 -0.3633 0.9311 -0.4351 30 1 -0.3634 -0.8422 -0.5889 31 1 2.4423 1.6197 -1.0277 32 1 1.6714 2.0647 0.5138 33 1 3.2130 1.1746 0.5139 34 1 3.2371 -1.1374 -0.1008 35 1 1.5401 -3.0272 -0.7647 36 1 0.3559 -2.2315 0.2996 37 1 1.1362 -5.0533 0.7854 38 1 0.0669 -4.0034 1.7457 39 1 0.9717 -5.8703 3.1154 40 1 1.5397 -4.2930 3.7147 41 1 3.0931 -6.1943 1.8989 42 1 1.6762 -6.9577 4.5110 43 1 3.0832 -7.7117 5.2989 44 1 2.7587 -8.0170 3.5759 45 1 5.2842 -6.7077 2.9234 46 1 7.2290 -8.0224 4.2471 47 1 7.7187 -6.3270 4.0143 48 1 11.1243 -7.6103 8.6485 49 1 3.8847 -3.5167 3.1354 50 1 4.9268 -4.5618 2.1391 51 1 3.3655 -4.3146 0.2357 52 1 3.9334 -2.7222 0.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332932556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:29 Heat of formation + Delta-G solvation = -40.158602 kcal Electronic energy + Delta-G solvation = -27052.987466 eV Core-core repulsion = 23371.036670 eV Total energy + Delta-G solvation = -3681.950795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.06664 -38.92609 -37.17870 -35.58402 -32.95391 -32.40941 -31.32005 -30.68161 -28.82910 -28.32115 -27.91994 -25.51267 -25.31731 -23.29523 -23.04766 -21.27664 -20.35106 -19.78102 -18.12574 -17.81719 -16.62758 -16.23697 -15.94808 -15.63837 -15.20741 -14.90502 -14.78870 -14.54608 -14.34300 -14.15841 -14.04023 -13.91822 -13.66730 -13.29293 -13.12725 -12.85673 -12.77600 -12.65027 -12.54549 -12.36660 -12.20996 -11.96774 -11.85824 -11.63081 -11.43101 -11.37345 -11.13900 -11.02737 -11.02718 -10.77968 -10.75720 -10.55952 -10.39583 -9.79877 -9.31001 -9.13690 -9.04537 -8.81514 -8.52235 -8.21207 -6.47479 -6.19690 -3.90006 1.79588 3.07498 3.16277 3.24484 3.28707 3.33061 3.70168 3.75975 4.22385 4.35776 4.41904 4.55281 4.61603 4.64546 4.87661 4.94807 5.00823 5.03939 5.11512 5.15009 5.15300 5.17784 5.19638 5.28000 5.31471 5.33276 5.39055 5.44322 5.47766 5.49713 5.53649 5.58945 5.59768 5.66436 5.69546 5.75175 5.78519 5.85044 5.92323 5.95207 6.08665 6.16919 6.21563 6.31785 6.33200 6.57946 6.74609 6.80344 6.82256 7.60882 7.79099 8.36737 8.69091 9.25392 10.87641 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.001904 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.484615 B =14704.412708 C =15827.412766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.158 4.158 5 C 0.081 3.919 6 N -0.532 5.532 7 C 0.058 3.942 8 C -0.109 4.109 9 C -0.093 4.093 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.111 4.111 27 C 0.056 3.944 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.395 0.605 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.030 0.970 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.851 10.562 -19.887 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.174 4.174 4 C -0.177 4.177 5 C -0.045 4.045 6 N -0.256 5.256 7 C -0.070 4.070 8 C -0.148 4.148 9 C -0.112 4.112 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.223 4.223 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.149 4.149 27 C -0.072 4.072 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.229 0.771 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.049 0.951 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.468 11.318 -17.420 30.600 hybrid contribution 1.852 -1.373 -2.824 3.645 sum -20.616 9.945 -20.244 30.557 Atomic orbital electron populations 1.20876 0.92537 1.02043 1.02202 1.21582 0.95734 0.95031 1.00251 1.20827 0.99859 0.94877 1.01831 1.22476 0.99466 0.93280 1.02453 1.21178 0.98974 0.92793 0.91601 1.61945 1.02280 1.23540 1.37880 1.22079 0.96818 0.91120 0.96977 1.21648 0.95005 1.00261 0.97853 1.21471 0.95531 0.97206 0.97037 1.20886 0.80943 0.96420 0.97317 0.89394 1.22233 0.99661 0.98173 1.02258 1.46082 1.11216 1.71142 1.10290 1.20267 0.87048 0.76519 0.84267 1.90695 1.76738 1.47648 1.24126 1.23537 0.94998 1.03860 1.08056 1.85389 1.07580 1.88604 1.01730 1.22833 0.96439 1.52737 0.96426 0.91030 1.24987 0.99088 0.94989 0.94503 1.70009 1.33826 1.45727 1.00724 0.86234 0.82009 0.79186 0.78123 1.19957 1.20811 1.19968 1.21633 0.98568 0.96909 0.97816 1.22131 0.89274 0.98996 0.96801 0.91285 0.92045 0.91811 0.91771 0.91753 0.91772 0.87399 0.94609 0.89923 0.95042 0.90784 0.90876 0.90590 0.91153 0.91728 0.91766 0.92789 0.77108 0.89373 0.89355 0.92148 0.90730 0.91152 0.95133 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 8.93 36.00 0.32 -0.38 16 2 C -0.12 -0.90 6.05 -101.07 -0.61 -1.51 16 3 C -0.12 -0.73 10.00 36.01 0.36 -0.37 16 4 C -0.16 -1.23 8.74 -36.03 -0.31 -1.55 16 5 C 0.08 0.61 5.04 -4.97 -0.03 0.59 16 6 N -0.53 -4.53 4.65 -236.11 -1.10 -5.62 16 7 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 8 C -0.11 -0.87 4.95 -26.65 -0.13 -1.01 16 9 C -0.09 -0.83 1.89 -90.49 -0.17 -1.00 16 10 C 0.15 1.75 2.16 -67.93 -0.15 1.60 16 11 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 12 C -0.16 -1.83 9.14 37.16 0.34 -1.50 16 13 N -0.73 -9.75 4.43 -53.81 -0.24 -9.99 16 14 C 0.53 9.95 7.81 -10.99 -0.09 9.86 16 15 O -0.52 -11.80 15.52 5.56 0.09 -11.71 16 16 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.11 -1.06 5.19 -26.65 -0.14 -1.19 16 27 C 0.06 0.48 5.30 -3.83 -0.02 0.46 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.30 8.09 -51.92 -0.42 -0.12 16 30 H 0.06 0.33 6.65 -51.93 -0.35 -0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.11 0.86 6.86 -52.49 -0.36 0.50 16 35 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 36 H 0.08 0.56 5.55 -51.93 -0.29 0.27 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.50 8.02 -51.92 -0.42 0.08 16 39 H 0.07 0.51 6.58 -51.93 -0.34 0.17 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.40 4.18 8.41 -40.82 -0.34 3.84 16 46 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 50 H 0.07 0.67 7.54 -51.93 -0.39 0.28 16 51 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 52 H 0.08 0.65 6.43 -51.93 -0.33 0.32 16 LS Contribution 419.27 15.07 6.32 6.32 Total: -1.00 -33.77 419.27 -11.09 -44.86 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -9.43 Total: 0.62 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.23 Total: -11.55 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.60 Total: -41.20 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.77 -11.09 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332932556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.702 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds