Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00230 * 2 1 4 4 N 1.46497 * 109.46837 * 122.37930 * 3 2 1 5 5 C 1.36454 * 127.13819 * 272.49115 * 4 3 2 6 6 N 1.38584 * 126.47675 * 0.02562 * 5 4 3 7 7 C 1.46902 * 111.00008 * 85.22216 * 6 5 4 8 8 C 1.52999 * 109.46695 * 65.88662 * 7 6 5 9 9 F 1.39899 * 109.47205 * 184.13086 * 8 7 6 10 10 C 1.46899 * 111.00269 * 209.18126 * 6 5 4 11 11 C 1.53004 * 109.47080 * 163.25168 * 10 6 5 12 12 O 1.42898 * 109.47310 * 68.02084 * 11 10 6 13 13 C 1.42896 * 114.00194 * 184.50217 * 12 11 10 14 14 N 1.31221 * 107.05555 * 180.26529 * 5 4 3 15 15 N 1.28523 * 109.85645 * 359.74185 * 14 5 4 16 16 C 1.30294 * 110.05768 * 359.97438 * 15 14 5 17 17 C 1.50702 * 126.34930 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46805 * 245.99521 * 17 16 15 19 19 C 1.52997 * 109.47082 * 125.99698 * 17 16 15 20 20 C 1.50702 * 109.47099 * 5.99216 * 17 16 15 21 21 H 1.08006 * 119.99863 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99951 * 179.97438 * 20 17 16 23 23 N 1.31508 * 119.99830 * 359.72775 * 22 20 17 24 24 Si 1.86801 * 119.99850 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47222 * 89.99989 * 24 22 20 26 26 H 1.48500 * 109.46940 * 209.99940 * 24 22 20 27 27 H 1.48496 * 109.47265 * 329.99722 * 24 22 20 28 28 H 1.08003 * 120.00398 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00112 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99641 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46780 * 2.38697 * 3 2 1 32 32 H 1.09000 * 109.47274 * 242.38108 * 3 2 1 33 33 H 1.09000 * 109.47209 * 185.87968 * 7 6 5 34 34 H 1.08993 * 109.47295 * 305.88820 * 7 6 5 35 35 H 1.09006 * 109.47293 * 304.12788 * 8 7 6 36 36 H 1.08999 * 109.47862 * 64.12671 * 8 7 6 37 37 H 1.08999 * 109.47140 * 283.24759 * 10 6 5 38 38 H 1.08997 * 109.47162 * 43.25670 * 10 6 5 39 39 H 1.08995 * 109.47370 * 188.02361 * 11 10 6 40 40 H 1.09008 * 109.47079 * 308.02070 * 11 10 6 41 41 H 1.08999 * 109.47137 * 299.99912 * 13 12 11 42 42 H 1.08996 * 109.47353 * 59.99706 * 13 12 11 43 43 H 1.08993 * 109.47435 * 180.02562 * 13 12 11 44 44 H 1.09004 * 109.47234 * 185.20964 * 18 17 16 45 45 H 1.08997 * 109.47409 * 305.20824 * 18 17 16 46 46 H 1.08997 * 109.47203 * 65.21232 * 18 17 16 47 47 H 1.09009 * 109.47099 * 299.99828 * 19 17 16 48 48 H 1.09000 * 109.47377 * 59.99763 * 19 17 16 49 49 H 1.08997 * 109.47160 * 180.02562 * 19 17 16 50 50 H 0.97007 * 120.00260 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9482 1.3580 1.1665 5 6 2.6359 1.8039 2.4177 6 7 1.4099 2.2979 2.8342 7 6 0.5133 1.2073 3.2402 8 6 1.0761 0.5220 4.4870 9 9 0.2735 -0.5748 4.8186 10 6 1.5767 3.2740 3.9192 11 6 0.2937 4.0941 4.0691 12 8 -0.7543 3.2541 4.5571 13 6 -2.0267 3.8995 4.6374 14 7 3.7173 1.6815 3.1509 15 7 4.6705 1.1879 2.4441 16 6 4.2572 0.9675 1.2282 17 6 5.0726 0.3947 0.0977 18 6 5.2564 1.4571 -0.9878 19 6 4.3470 -0.8165 -0.4918 20 6 6.4216 -0.0315 0.6170 21 1 6.6640 0.0990 1.6614 22 6 7.3459 -0.5890 -0.2409 23 7 7.0483 -0.7537 -1.5112 24 14 9.0177 -1.1179 0.4030 25 1 8.9506 -2.5318 0.8518 26 1 10.0278 -0.9890 -0.6778 27 1 9.4038 -0.2533 1.5469 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3559 2.1331 0.0428 32 1 2.6578 1.3815 -0.9106 33 1 -0.4739 1.6123 3.4626 34 1 0.4345 0.4815 2.4309 35 1 2.0921 0.1815 4.2871 36 1 1.0865 1.2287 5.3167 37 1 1.7831 2.7489 4.8518 38 1 2.4077 3.9392 3.6850 39 1 0.4635 4.9091 4.7726 40 1 0.0092 4.5041 3.0999 41 1 -1.9591 4.7536 5.3111 42 1 -2.3239 4.2414 3.6460 43 1 -2.7677 3.1959 5.0167 44 1 5.7657 1.0165 -1.8449 45 1 4.2812 1.8322 -1.2980 46 1 5.8535 2.2795 -0.5938 47 1 4.2160 -1.5734 0.2816 48 1 3.3713 -0.5082 -0.8674 49 1 4.9370 -1.2310 -1.3091 50 1 7.6984 -1.1462 -2.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340555130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = 25.591600 kcal Electronic energy + Delta-G solvation = -32201.533888 eV Core-core repulsion = 27988.513811 eV Total energy + Delta-G solvation = -4213.020078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.49296 -42.40034 -38.89853 -37.08746 -36.33154 -35.09835 -32.42162 -31.33137 -30.70142 -29.44060 -27.50812 -26.65075 -26.22636 -25.95254 -25.11950 -23.70084 -22.24782 -21.74805 -20.33998 -19.92967 -18.91575 -17.47823 -17.07502 -16.55234 -16.12789 -15.90894 -15.82212 -15.48238 -15.32445 -15.03433 -14.80078 -14.72894 -14.62783 -13.93649 -13.49892 -13.43783 -12.91114 -12.75698 -12.38763 -12.33592 -12.17647 -11.95362 -11.85320 -11.71905 -11.48574 -11.34781 -11.26965 -11.06936 -10.98005 -10.68810 -10.65729 -10.55731 -10.19970 -10.08360 -9.96714 -9.83170 -9.76849 -9.57154 -9.44968 -9.01034 -8.71368 -8.39894 -7.89649 -6.03473 -4.08608 2.00651 2.39120 2.85781 3.33925 3.40175 3.48057 3.51061 3.62379 3.90510 4.44516 4.64193 4.73018 4.81893 4.86618 4.92409 5.00753 5.03970 5.07919 5.17450 5.20905 5.25834 5.29378 5.35652 5.38261 5.41871 5.49061 5.56349 5.60213 5.83454 5.85236 5.93653 6.08116 6.15308 6.43615 6.49347 6.54033 6.60530 6.65959 6.67803 6.73655 6.79838 6.86747 7.12464 7.19790 7.36217 7.59120 7.77708 7.81592 8.08557 8.30281 8.98070 9.50919 9.60952 11.00466 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003453 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.194337 B = 8106.739077 C = 8475.639367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.468 5.468 5 C 0.303 3.697 6 N -0.444 5.444 7 C 0.025 3.975 8 C 0.030 3.970 9 F -0.217 7.217 10 C 0.065 3.935 11 C 0.064 3.936 12 O -0.388 6.388 13 C 0.031 3.969 14 N -0.325 5.325 15 N -0.287 5.287 16 C 0.245 3.755 17 C 0.146 3.854 18 C -0.130 4.130 19 C -0.141 4.141 20 C -0.492 4.492 21 H 0.077 0.923 22 C 0.063 3.937 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.272 1.272 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.008 0.992 46 H 0.035 0.965 47 H 0.029 0.971 48 H 0.020 0.980 49 H 0.097 0.903 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 8.040 4.513 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C 0.014 3.986 4 N -0.161 5.161 5 C -0.052 4.052 6 N -0.167 5.167 7 C -0.103 4.103 8 C -0.026 4.026 9 F -0.198 7.198 10 C -0.062 4.062 11 C -0.013 4.013 12 O -0.307 6.307 13 C -0.065 4.065 14 N -0.169 5.169 15 N -0.124 5.124 16 C -0.022 4.022 17 C 0.143 3.857 18 C -0.188 4.188 19 C -0.200 4.200 20 C -0.531 4.531 21 H 0.095 0.905 22 C -0.137 4.137 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.196 1.196 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.027 0.973 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.039 0.961 49 H 0.116 0.884 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.524 8.101 5.225 20.000 hybrid contribution 0.163 -0.461 -0.266 0.556 sum -17.361 7.641 4.959 19.606 Atomic orbital electron populations 1.23901 0.95536 1.02142 0.99449 1.23423 0.96253 0.98957 1.00436 1.21012 0.93019 0.96591 0.88003 1.46306 1.11648 1.49004 1.09159 1.22277 0.93721 1.04797 0.84450 1.58796 1.06655 1.13741 1.37538 1.23122 0.97842 0.92835 0.96512 1.22700 0.94386 0.85975 0.99542 1.92726 1.76233 1.56862 1.94025 1.22208 0.96622 0.94257 0.93106 1.22649 0.87204 0.92769 0.98654 1.87908 1.17755 1.38536 1.86521 1.22719 0.85486 0.98106 1.00233 1.74562 0.97593 1.18831 1.25949 1.74095 1.20694 1.16122 1.01499 1.26221 0.80389 0.97456 0.98099 1.16922 0.91974 0.91400 0.85362 1.21921 0.97480 0.97971 1.01421 1.22130 0.97444 0.98310 1.02082 1.21076 0.96143 1.39402 0.96488 0.90507 1.24856 0.98615 0.95432 0.94790 1.69783 1.35149 1.45188 1.03288 0.86455 0.83269 0.79007 0.78560 1.20755 1.21383 1.19640 0.87969 0.88280 0.85847 0.88822 0.87103 0.86383 0.89658 0.90518 0.90217 0.91534 0.88315 0.92176 0.92088 0.94203 0.94003 0.89746 0.88617 0.97310 0.94583 0.95175 0.96073 0.88411 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 12.97 29.02 0.38 -1.48 16 2 C -0.17 -2.31 8.05 -36.03 -0.29 -2.60 16 3 C 0.14 2.00 5.64 -5.20 -0.03 1.97 16 4 N -0.47 -8.56 2.79 -115.37 -0.32 -8.89 16 5 C 0.30 5.40 5.78 -318.86 -1.84 3.56 16 6 N -0.44 -6.14 4.69 -174.51 -0.82 -6.96 16 7 C 0.02 0.33 5.35 -3.82 -0.02 0.31 16 8 C 0.03 0.45 6.88 37.16 0.26 0.70 16 9 F -0.22 -3.41 17.36 2.25 0.04 -3.37 16 10 C 0.07 0.78 4.86 -3.82 -0.02 0.77 16 11 C 0.06 0.58 6.22 37.16 0.23 0.81 16 12 O -0.39 -3.75 7.80 -35.23 -0.27 -4.02 16 13 C 0.03 0.21 11.01 101.05 1.11 1.32 16 14 N -0.32 -6.83 10.90 30.32 0.33 -6.50 16 15 N -0.29 -6.91 11.00 32.99 0.36 -6.55 16 16 C 0.25 5.47 6.34 -154.02 -0.98 4.50 16 17 C 0.15 3.43 0.48 -156.81 -0.07 3.35 16 18 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 19 C -0.14 -3.10 7.52 37.16 0.28 -2.83 16 20 C -0.49 -13.18 7.91 -34.44 -0.27 -13.45 16 21 H 0.08 2.19 6.95 -52.48 -0.37 1.82 16 22 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 23 N -0.89 -23.40 9.41 55.43 0.52 -22.88 16 24 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.10 0.93 7.84 -52.48 -0.41 0.52 16 30 H 0.12 1.87 6.39 -52.49 -0.34 1.54 16 31 H 0.09 1.18 7.79 -51.93 -0.40 0.78 16 32 H 0.11 1.67 4.77 -51.93 -0.25 1.42 16 33 H 0.12 1.42 5.56 -51.93 -0.29 1.13 16 34 H 0.09 1.19 5.82 -51.93 -0.30 0.89 16 35 H 0.08 1.34 6.73 -51.93 -0.35 0.99 16 36 H 0.08 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.07 0.84 5.73 -51.93 -0.30 0.54 16 38 H 0.10 1.25 7.94 -51.93 -0.41 0.84 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.29 6.24 -51.93 -0.32 1.96 16 45 H 0.01 0.16 5.67 -51.93 -0.29 -0.14 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 48 H 0.02 0.39 3.80 -51.93 -0.20 0.19 16 49 H 0.10 2.35 6.06 -51.93 -0.31 2.03 16 50 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -29.53 384.02 -7.85 -37.37 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.39 Total: 3.87 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.06 Total: -4.08 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.07 Total: -51.77 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.27 Total: -4.02 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.53 -7.85 -37.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340555130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.965 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds