Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00230 * 2 1 4 4 N 1.46497 * 109.46837 * 122.37930 * 3 2 1 5 5 C 1.36454 * 127.13819 * 272.49115 * 4 3 2 6 6 N 1.38584 * 126.47675 * 0.02562 * 5 4 3 7 7 C 1.46902 * 111.00008 * 85.22216 * 6 5 4 8 8 C 1.52999 * 109.46695 * 65.88662 * 7 6 5 9 9 F 1.39899 * 109.47205 * 184.13086 * 8 7 6 10 10 C 1.46899 * 111.00269 * 209.18126 * 6 5 4 11 11 C 1.53004 * 109.47080 * 163.25168 * 10 6 5 12 12 O 1.42898 * 109.47310 * 68.02084 * 11 10 6 13 13 C 1.42896 * 114.00194 * 184.50217 * 12 11 10 14 14 N 1.31221 * 107.05555 * 180.26529 * 5 4 3 15 15 N 1.28523 * 109.85645 * 359.74185 * 14 5 4 16 16 C 1.30294 * 110.05768 * 359.97438 * 15 14 5 17 17 C 1.50702 * 126.34930 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46805 * 245.99521 * 17 16 15 19 19 C 1.52997 * 109.47082 * 125.99698 * 17 16 15 20 20 C 1.50702 * 109.47099 * 5.99216 * 17 16 15 21 21 H 1.08006 * 119.99863 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99951 * 179.97438 * 20 17 16 23 23 N 1.31508 * 119.99830 * 359.72775 * 22 20 17 24 24 Si 1.86801 * 119.99850 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47222 * 89.99989 * 24 22 20 26 26 H 1.48500 * 109.46940 * 209.99940 * 24 22 20 27 27 H 1.48496 * 109.47265 * 329.99722 * 24 22 20 28 28 H 1.08003 * 120.00398 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00112 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99641 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46780 * 2.38697 * 3 2 1 32 32 H 1.09000 * 109.47274 * 242.38108 * 3 2 1 33 33 H 1.09000 * 109.47209 * 185.87968 * 7 6 5 34 34 H 1.08993 * 109.47295 * 305.88820 * 7 6 5 35 35 H 1.09006 * 109.47293 * 304.12788 * 8 7 6 36 36 H 1.08999 * 109.47862 * 64.12671 * 8 7 6 37 37 H 1.08999 * 109.47140 * 283.24759 * 10 6 5 38 38 H 1.08997 * 109.47162 * 43.25670 * 10 6 5 39 39 H 1.08995 * 109.47370 * 188.02361 * 11 10 6 40 40 H 1.09008 * 109.47079 * 308.02070 * 11 10 6 41 41 H 1.08999 * 109.47137 * 299.99912 * 13 12 11 42 42 H 1.08996 * 109.47353 * 59.99706 * 13 12 11 43 43 H 1.08993 * 109.47435 * 180.02562 * 13 12 11 44 44 H 1.09004 * 109.47234 * 185.20964 * 18 17 16 45 45 H 1.08997 * 109.47409 * 305.20824 * 18 17 16 46 46 H 1.08997 * 109.47203 * 65.21232 * 18 17 16 47 47 H 1.09009 * 109.47099 * 299.99828 * 19 17 16 48 48 H 1.09000 * 109.47377 * 59.99763 * 19 17 16 49 49 H 1.08997 * 109.47160 * 180.02562 * 19 17 16 50 50 H 0.97007 * 120.00260 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9482 1.3580 1.1665 5 6 2.6359 1.8039 2.4177 6 7 1.4099 2.2979 2.8342 7 6 0.5133 1.2073 3.2402 8 6 1.0761 0.5220 4.4870 9 9 0.2735 -0.5748 4.8186 10 6 1.5767 3.2740 3.9192 11 6 0.2937 4.0941 4.0691 12 8 -0.7543 3.2541 4.5571 13 6 -2.0267 3.8995 4.6374 14 7 3.7173 1.6815 3.1509 15 7 4.6705 1.1879 2.4441 16 6 4.2572 0.9675 1.2282 17 6 5.0726 0.3947 0.0977 18 6 5.2564 1.4571 -0.9878 19 6 4.3470 -0.8165 -0.4918 20 6 6.4216 -0.0315 0.6170 21 1 6.6640 0.0990 1.6614 22 6 7.3459 -0.5890 -0.2409 23 7 7.0483 -0.7537 -1.5112 24 14 9.0177 -1.1179 0.4030 25 1 8.9506 -2.5318 0.8518 26 1 10.0278 -0.9890 -0.6778 27 1 9.4038 -0.2533 1.5469 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3559 2.1331 0.0428 32 1 2.6578 1.3815 -0.9106 33 1 -0.4739 1.6123 3.4626 34 1 0.4345 0.4815 2.4309 35 1 2.0921 0.1815 4.2871 36 1 1.0865 1.2287 5.3167 37 1 1.7831 2.7489 4.8518 38 1 2.4077 3.9392 3.6850 39 1 0.4635 4.9091 4.7726 40 1 0.0092 4.5041 3.0999 41 1 -1.9591 4.7536 5.3111 42 1 -2.3239 4.2414 3.6460 43 1 -2.7677 3.1959 5.0167 44 1 5.7657 1.0165 -1.8449 45 1 4.2812 1.8322 -1.2980 46 1 5.8535 2.2795 -0.5938 47 1 4.2160 -1.5734 0.2816 48 1 3.3713 -0.5082 -0.8674 49 1 4.9370 -1.2310 -1.3091 50 1 7.6984 -1.1462 -2.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340555130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = 9.719534 kcal Electronic energy + Delta-G solvation = -32202.222153 eV Core-core repulsion = 27988.513811 eV Total energy + Delta-G solvation = -4213.708342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.73071 -43.92570 -39.85461 -38.08605 -37.75777 -36.62397 -33.72063 -33.18141 -31.64428 -30.81643 -28.81771 -27.75311 -27.70651 -27.11189 -26.97814 -24.77193 -23.43721 -23.31791 -21.57626 -21.21581 -20.37457 -18.66249 -18.14347 -17.89181 -17.58391 -17.00139 -16.95657 -16.82906 -16.63527 -16.40268 -16.09483 -15.89252 -15.53896 -15.23123 -14.97409 -14.70336 -14.55683 -13.93289 -13.65203 -13.52907 -13.36108 -13.14200 -12.97698 -12.95003 -12.88310 -12.71541 -12.60683 -12.59112 -12.46342 -12.29396 -12.06551 -12.03636 -11.82631 -11.78741 -11.76150 -11.43597 -10.99325 -10.65485 -10.51890 -10.45025 -10.40463 -10.26867 -9.39605 -8.05045 -6.15251 0.83863 1.03740 1.42340 1.44682 1.54786 1.62808 1.99328 2.47400 2.68887 2.87568 3.21244 3.48172 3.62634 3.72511 3.76238 3.86948 3.90744 3.98851 4.15539 4.22170 4.27030 4.30824 4.40890 4.45361 4.53224 4.61782 4.65463 4.68102 4.71352 4.79533 4.85698 4.90864 4.93221 4.95483 4.95902 4.98752 5.06236 5.19173 5.28389 5.51124 5.55677 5.57310 5.62728 5.68833 5.80183 5.97316 6.08160 6.26624 6.31392 6.41566 6.87954 7.50329 7.96879 8.96425 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003453 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.194337 B = 8106.739077 C = 8475.639367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.206 4.206 3 C 0.133 3.867 4 N -0.463 5.463 5 C 0.327 3.673 6 N -0.430 5.430 7 C 0.034 3.966 8 C 0.035 3.965 9 F -0.222 7.222 10 C 0.061 3.939 11 C 0.074 3.926 12 O -0.408 6.408 13 C 0.027 3.973 14 N -0.354 5.354 15 N -0.332 5.332 16 C 0.228 3.772 17 C 0.143 3.857 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.515 4.515 21 H 0.049 0.951 22 C 0.032 3.968 23 N -0.901 5.901 24 Si 0.945 3.055 25 H -0.280 1.280 26 H -0.277 1.277 27 H -0.282 1.282 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.017 0.983 47 H 0.011 0.989 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.623 9.237 4.190 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.225 4.225 3 C 0.012 3.988 4 N -0.155 5.155 5 C -0.030 4.030 6 N -0.154 5.154 7 C -0.093 4.093 8 C -0.021 4.021 9 F -0.203 7.203 10 C -0.066 4.066 11 C -0.003 4.003 12 O -0.328 6.328 13 C -0.069 4.069 14 N -0.198 5.198 15 N -0.170 5.170 16 C -0.041 4.041 17 C 0.140 3.860 18 C -0.176 4.176 19 C -0.184 4.184 20 C -0.554 4.554 21 H 0.068 0.932 22 C -0.167 4.167 23 N -0.540 5.540 24 Si 0.772 3.228 25 H -0.206 1.206 26 H -0.202 1.202 27 H -0.207 1.207 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.030 0.970 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.833 9.301 4.884 23.332 hybrid contribution 1.007 -0.802 -0.092 1.291 sum -19.826 8.499 4.793 22.097 Atomic orbital electron populations 1.24189 0.94380 1.03991 0.94610 1.23148 0.97171 0.97321 1.04855 1.21289 0.92867 0.98446 0.86206 1.46422 1.10729 1.48049 1.10311 1.22677 0.94262 1.02103 0.83971 1.59084 1.04346 1.13697 1.38274 1.23131 0.98256 0.92459 0.95482 1.22668 0.92674 0.85890 1.00906 1.92715 1.76148 1.57323 1.94143 1.22328 0.98568 0.93788 0.91880 1.22547 0.85641 0.92192 0.99873 1.87840 1.18820 1.39463 1.86678 1.22876 0.84180 0.98611 1.01200 1.74459 0.98361 1.20443 1.26537 1.73980 1.22729 1.17525 1.02735 1.25798 0.82126 0.98742 0.97434 1.16807 0.90975 0.92114 0.86065 1.21737 0.98722 0.96917 1.00187 1.21931 0.98668 0.97218 1.00545 1.21187 0.98419 1.40332 0.95451 0.93235 1.25335 1.00763 0.95515 0.95131 1.69854 1.35674 1.45039 1.03453 0.85762 0.80790 0.78326 0.77961 1.20621 1.20222 1.20720 0.86470 0.85885 0.88185 0.86027 0.87778 0.84027 0.90015 0.93842 0.88890 0.92407 0.89204 0.90149 0.91027 0.93175 0.92993 0.89045 0.90290 0.94119 0.96332 0.96986 0.92740 0.90434 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 12.97 67.78 0.88 -1.47 16 2 C -0.21 -5.10 8.05 25.65 0.21 -4.89 16 3 C 0.13 3.61 5.64 85.63 0.48 4.09 16 4 N -0.46 -16.73 2.79 -518.91 -1.45 -18.18 16 5 C 0.33 11.48 5.78 260.11 1.50 12.98 16 6 N -0.43 -11.03 4.69 -706.02 -3.31 -14.34 16 7 C 0.03 0.82 5.35 86.30 0.46 1.28 16 8 C 0.04 1.00 6.88 71.98 0.50 1.49 16 9 F -0.22 -6.69 17.36 44.97 0.78 -5.91 16 10 C 0.06 1.36 4.86 86.30 0.42 1.78 16 11 C 0.07 1.10 6.22 71.98 0.45 1.55 16 12 O -0.41 -6.43 7.80 -148.98 -1.16 -7.60 16 13 C 0.03 0.26 11.01 113.37 1.25 1.51 16 14 N -0.35 -15.30 10.90 -58.00 -0.63 -15.93 16 15 N -0.33 -16.71 11.00 -49.54 -0.55 -17.26 16 16 C 0.23 10.44 6.34 137.64 0.87 11.32 16 17 C 0.14 6.91 0.48 -53.67 -0.03 6.88 16 18 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 19 C -0.13 -5.63 7.52 71.98 0.54 -5.09 16 20 C -0.52 -28.75 7.91 25.60 0.20 -28.55 16 21 H 0.05 2.99 6.95 -2.91 -0.02 2.97 16 22 C 0.03 1.73 5.15 84.66 0.44 2.16 16 23 N -0.90 -47.88 9.41 21.45 0.20 -47.68 16 24 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.12 1.62 7.84 -2.91 -0.02 1.59 16 30 H 0.10 2.97 6.39 -2.91 -0.02 2.95 16 31 H 0.12 2.60 7.79 -2.39 -0.02 2.59 16 32 H 0.10 2.94 4.77 -2.39 -0.01 2.93 16 33 H 0.14 2.85 5.56 -2.39 -0.01 2.84 16 34 H 0.08 2.05 5.82 -2.39 -0.01 2.04 16 35 H 0.04 1.54 6.73 -2.38 -0.02 1.52 16 36 H 0.09 2.38 6.34 -2.39 -0.02 2.37 16 37 H 0.06 1.40 5.73 -2.39 -0.01 1.39 16 38 H 0.09 2.18 7.94 -2.39 -0.02 2.16 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 3.82 6.24 -2.38 -0.01 3.81 16 45 H 0.04 1.52 5.67 -2.39 -0.01 1.51 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.05 2.03 3.80 -2.39 -0.01 2.02 16 49 H 0.08 3.80 6.06 -2.39 -0.01 3.78 16 50 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -67.23 384.02 5.61 -61.62 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.96 Total: 18.33 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 8.75 Total: 0.33 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.74 Total: -113.38 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -1.16 Total: -7.60 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.78 Total: -5.91 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.23 5.61 -61.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340555130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.336 kcal (2) G-P(sol) polarization free energy of solvation -67.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds