Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47147 * 192.77246 * 3 2 1 5 5 C 1.46893 * 111.00303 * 199.72619 * 4 3 2 6 6 C 1.47203 * 109.47051 * 66.04389 * 5 4 3 7 7 C 4.65409 * 138.24557 * 116.61649 * 2 1 3 8 8 C 5.67647 * 128.54834 * 107.25754 * 2 1 3 9 9 C 1.38580 * 110.99622 * 75.76954 * 4 3 2 10 10 N 1.31216 * 126.47470 * 68.20865 * 9 4 3 11 11 N 1.28531 * 109.86382 * 179.97438 * 10 9 4 12 12 C 1.30291 * 110.04852 * 359.97438 * 11 10 9 13 13 C 1.50709 * 126.34119 * 180.26250 * 12 11 10 14 14 C 1.52999 * 109.47147 * 269.68774 * 13 12 11 15 15 C 1.52993 * 109.47245 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47123 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00496 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46995 * 60.00152 * 20 18 16 22 22 H 1.48499 * 109.46709 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47189 * 299.99787 * 20 18 16 24 24 N 1.36453 * 126.47312 * 248.15759 * 9 4 3 25 25 C 1.46495 * 127.13685 * 0.06372 * 24 9 4 26 26 C 1.53002 * 109.47039 * 265.38217 * 25 24 9 27 27 C 1.52999 * 117.49718 * 243.39815 * 26 25 24 28 28 C 1.52998 * 60.00149 * 252.51290 * 27 26 25 29 29 H 4.40891 * 5.52288 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47171 * 72.77318 * 3 2 1 31 31 H 1.08995 * 109.47498 * 312.77409 * 3 2 1 32 32 H 1.09002 * 109.47438 * 186.04755 * 5 4 3 33 33 H 1.09009 * 109.46879 * 306.04820 * 5 4 3 34 34 H 1.08998 * 109.47431 * 77.09876 * 8 7 6 35 35 H 1.09007 * 109.46844 * 197.09335 * 8 7 6 36 36 H 1.09000 * 109.47504 * 317.09185 * 8 7 6 37 37 H 1.08997 * 109.47204 * 29.68397 * 13 12 11 38 38 H 1.08997 * 109.46803 * 149.68797 * 13 12 11 39 39 H 1.09000 * 109.47100 * 300.00573 * 14 13 12 40 40 H 1.08999 * 109.46972 * 59.99579 * 14 13 12 41 41 H 1.08997 * 109.47000 * 299.99558 * 15 14 13 42 42 H 1.09004 * 109.47236 * 60.00031 * 15 14 13 43 43 H 0.96992 * 120.00530 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.47586 * 25.38384 * 25 24 9 45 45 H 1.09003 * 109.47191 * 145.38034 * 25 24 9 46 46 H 1.08991 * 115.54896 * 29.10513 * 26 25 24 47 47 H 1.08998 * 117.50129 * 0.02562 * 27 26 25 48 48 H 1.09008 * 117.49466 * 145.02141 * 27 26 25 49 49 H 1.09000 * 117.49583 * 252.51503 * 28 27 26 50 50 H 1.08998 * 117.49703 * 107.49055 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.3516 0.3062 5 6 4.5275 1.5190 -0.1306 6 6 4.5930 1.4474 -1.5994 7 6 4.6459 1.3886 -2.7709 8 6 4.7114 1.3170 -4.2396 9 6 3.0006 1.6343 1.6562 10 7 3.6662 1.0766 2.6400 11 7 3.2889 1.5778 3.7618 12 6 2.3683 2.4779 3.5619 13 6 1.6749 3.2966 4.6203 14 6 0.4180 2.5622 5.0911 15 6 -0.2863 3.3936 6.1651 16 6 -1.5247 2.6705 6.6284 17 1 -1.7833 1.7135 6.2000 18 6 -2.3269 3.2303 7.6000 19 7 -2.0118 4.3955 8.1221 20 14 -3.8616 2.3336 8.1748 21 1 -3.4815 1.0140 8.7399 22 1 -4.5452 3.1407 9.2171 23 1 -4.7784 2.1337 7.0238 24 7 2.1518 2.5458 2.2135 25 6 1.2045 3.4161 1.5126 26 6 1.8550 4.7773 1.2577 27 6 1.2268 5.9980 1.9330 28 6 1.0681 5.7916 0.4253 29 1 -1.0502 -0.0003 -0.0003 30 1 3.0095 -0.3035 -0.9815 31 1 3.0097 -0.6970 0.7543 32 1 4.8990 2.4880 0.2029 33 1 5.1409 0.7271 0.2995 34 1 5.7282 1.5307 -4.5689 35 1 4.4258 0.3176 -4.5678 36 1 4.0286 2.0497 -4.6699 37 1 2.3479 3.4432 5.4651 38 1 1.3959 4.2652 4.2055 39 1 -0.2549 2.4154 4.2463 40 1 0.6971 1.5935 5.5057 41 1 0.3865 3.5406 7.0100 42 1 -0.5654 4.3621 5.7500 43 1 -2.5764 4.7895 8.8053 44 1 0.9287 2.9614 0.5611 45 1 0.3119 3.5487 2.1241 46 1 2.9390 4.7665 1.1448 47 1 0.3503 5.8314 2.5591 48 1 1.8976 6.7906 2.2646 49 1 1.6345 6.4483 -0.2349 50 1 0.0869 5.4891 0.0593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346860504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 205.259888 kcal Electronic energy + Delta-G solvation = -29061.612854 eV Core-core repulsion = 25287.153003 eV Total energy + Delta-G solvation = -3774.459851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91602 -38.42498 -37.88219 -34.99952 -34.48621 -34.05550 -33.20626 -32.39280 -30.29463 -29.38411 -27.87277 -27.37800 -26.83502 -24.96528 -23.75297 -22.56334 -21.65351 -21.08260 -20.44798 -20.09524 -18.55277 -17.58848 -17.16896 -16.53875 -16.29063 -16.03472 -15.38700 -15.08423 -14.88405 -14.54189 -14.31778 -14.16568 -14.13115 -13.91941 -13.90303 -13.63061 -13.39401 -13.04628 -12.94021 -12.35686 -12.12425 -11.99494 -11.68477 -11.57108 -11.48133 -10.93555 -10.83070 -10.81609 -10.74316 -10.67909 -10.56758 -10.41953 -10.31956 -10.16835 -10.03202 -9.96090 -9.76060 -9.50811 -9.19128 -9.09469 -8.69748 -8.36524 -6.01837 -4.04118 1.74404 1.83252 2.39539 2.54005 2.67540 2.69781 2.98181 3.32390 3.36907 3.39748 3.53474 3.66781 3.92679 4.19928 4.42248 4.44781 4.55039 4.64373 4.72646 4.82148 4.92005 4.96476 5.06445 5.10571 5.12885 5.20597 5.22060 5.26613 5.33334 5.34695 5.35764 5.47529 5.49598 5.56359 5.74189 5.75017 5.84340 5.88743 5.91854 5.98132 6.07943 6.15678 6.24928 6.59819 6.61362 6.75306 7.02074 7.17842 7.31148 7.44743 7.63291 7.76633 7.97218 8.39725 8.85830 9.02058 9.59989 11.09293 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.002600 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.411392 B =10765.427832 C =11267.213497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 C 0.172 3.828 4 N -0.456 5.456 5 C 0.187 3.813 6 C -0.185 4.185 7 C -0.168 4.168 8 C -0.042 4.042 9 C 0.325 3.675 10 N -0.309 5.309 11 N -0.291 5.291 12 C 0.215 3.785 13 C -0.038 4.038 14 C -0.102 4.102 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.278 1.278 24 N -0.453 5.453 25 C 0.143 3.857 26 C -0.172 4.172 27 C -0.173 4.173 28 C -0.166 4.166 29 H 0.219 0.781 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -1.454 -24.586 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.190 4.190 3 C 0.046 3.954 4 N -0.181 5.181 5 C 0.062 3.938 6 C -0.186 4.186 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.031 4.031 10 N -0.153 5.153 11 N -0.131 5.131 12 C -0.052 4.052 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.145 5.145 25 C 0.020 3.980 26 C -0.191 4.191 27 C -0.210 4.210 28 C -0.204 4.204 29 H 0.236 0.764 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.684 -1.877 -23.994 26.753 hybrid contribution -1.570 -0.099 -0.022 1.573 sum 10.115 -1.977 -24.016 26.133 Atomic orbital electron populations 1.24955 0.95885 0.98515 1.00564 1.22636 0.93959 1.01580 1.00824 1.19106 0.85739 0.87568 1.02945 1.58341 1.21924 1.28480 1.09357 1.18844 0.86289 1.03766 0.84917 1.21758 1.02429 1.01452 0.92951 1.22389 0.99222 1.01545 0.93749 1.18890 1.03098 1.03162 0.84580 1.21931 0.95376 0.94942 0.90871 1.74504 1.23131 1.22686 0.94996 1.74074 1.12138 1.09583 1.17314 1.25350 0.97671 0.99433 0.82757 1.20402 0.97813 0.96322 0.93228 1.21649 0.92886 0.99766 0.99783 1.19083 0.94818 0.94727 0.92651 1.21174 1.08252 1.05291 1.21206 0.92829 1.25000 0.97975 0.94981 0.96373 1.69940 1.38631 1.16796 1.28011 0.86676 0.83216 0.79808 0.78420 1.20195 1.21266 1.20318 1.46256 1.30884 1.30062 1.07253 1.21450 0.90352 0.87923 0.98292 1.22501 0.99464 0.90090 1.07028 1.23183 1.03429 0.99139 0.95278 1.22931 1.01573 1.01518 0.94368 0.76375 0.87456 0.90185 0.88027 0.90054 0.90065 0.90079 0.90026 0.88430 0.90107 0.93710 0.92467 0.96148 0.96504 0.92925 0.87970 0.88229 0.87590 0.87672 0.88413 0.88534 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 19.25 29.55 0.57 -1.50 16 2 C -0.19 -2.36 13.23 -37.12 -0.49 -2.85 16 3 C 0.17 1.96 5.32 -6.61 -0.04 1.92 16 4 N -0.46 -5.47 4.40 -181.18 -0.80 -6.27 16 5 C 0.19 1.93 5.31 -6.61 -0.04 1.89 16 6 C -0.19 -1.85 12.23 -37.12 -0.45 -2.30 16 7 C -0.17 -1.49 14.13 -37.13 -0.52 -2.02 16 8 C -0.04 -0.21 10.32 34.37 0.35 0.14 16 9 C 0.33 4.77 5.97 -318.88 -1.90 2.87 16 10 N -0.31 -5.32 12.02 30.31 0.36 -4.96 16 11 N -0.29 -5.47 12.18 32.99 0.40 -5.07 16 12 C 0.22 3.64 7.32 -154.02 -1.13 2.51 16 13 C -0.04 -0.64 5.51 -27.88 -0.15 -0.79 16 14 C -0.10 -2.07 5.13 -26.74 -0.14 -2.21 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 N -0.45 -6.62 2.81 -114.09 -0.32 -6.94 16 25 C 0.14 1.72 6.14 -4.04 -0.02 1.69 16 26 C -0.17 -1.81 6.01 -90.62 -0.54 -2.36 16 27 C -0.17 -1.75 10.01 -26.73 -0.27 -2.01 16 28 C -0.17 -1.46 10.25 -26.73 -0.27 -1.74 16 29 H 0.22 1.82 7.80 -54.08 -0.42 1.40 16 30 H 0.11 1.02 6.84 -51.93 -0.36 0.67 16 31 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.08 0.80 8.12 -51.92 -0.42 0.38 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.10 1.19 8.12 -51.93 -0.42 0.77 16 45 H 0.10 1.23 7.78 -51.93 -0.40 0.82 16 46 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 48 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 435.47 15.07 6.56 6.56 Total: -1.00 -33.20 435.47 -11.96 -45.16 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.29 Total: 0.24 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -5.60 Total: -19.59 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.39 Total: -48.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.56 Total: 6.56 kcal Total: -33.20 -11.96 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346860504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.423 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds