Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47147 * 192.77246 * 3 2 1 5 5 C 1.46893 * 111.00303 * 199.72619 * 4 3 2 6 6 C 1.47203 * 109.47051 * 66.04389 * 5 4 3 7 7 C 4.65409 * 138.24557 * 116.61649 * 2 1 3 8 8 C 5.67647 * 128.54834 * 107.25754 * 2 1 3 9 9 C 1.38580 * 110.99622 * 75.76954 * 4 3 2 10 10 N 1.31216 * 126.47470 * 68.20865 * 9 4 3 11 11 N 1.28531 * 109.86382 * 179.97438 * 10 9 4 12 12 C 1.30291 * 110.04852 * 359.97438 * 11 10 9 13 13 C 1.50709 * 126.34119 * 180.26250 * 12 11 10 14 14 C 1.52999 * 109.47147 * 269.68774 * 13 12 11 15 15 C 1.52993 * 109.47245 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47123 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00496 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46995 * 60.00152 * 20 18 16 22 22 H 1.48499 * 109.46709 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47189 * 299.99787 * 20 18 16 24 24 N 1.36453 * 126.47312 * 248.15759 * 9 4 3 25 25 C 1.46495 * 127.13685 * 0.06372 * 24 9 4 26 26 C 1.53002 * 109.47039 * 265.38217 * 25 24 9 27 27 C 1.52999 * 117.49718 * 243.39815 * 26 25 24 28 28 C 1.52998 * 60.00149 * 252.51290 * 27 26 25 29 29 H 4.40891 * 5.52288 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47171 * 72.77318 * 3 2 1 31 31 H 1.08995 * 109.47498 * 312.77409 * 3 2 1 32 32 H 1.09002 * 109.47438 * 186.04755 * 5 4 3 33 33 H 1.09009 * 109.46879 * 306.04820 * 5 4 3 34 34 H 1.08998 * 109.47431 * 77.09876 * 8 7 6 35 35 H 1.09007 * 109.46844 * 197.09335 * 8 7 6 36 36 H 1.09000 * 109.47504 * 317.09185 * 8 7 6 37 37 H 1.08997 * 109.47204 * 29.68397 * 13 12 11 38 38 H 1.08997 * 109.46803 * 149.68797 * 13 12 11 39 39 H 1.09000 * 109.47100 * 300.00573 * 14 13 12 40 40 H 1.08999 * 109.46972 * 59.99579 * 14 13 12 41 41 H 1.08997 * 109.47000 * 299.99558 * 15 14 13 42 42 H 1.09004 * 109.47236 * 60.00031 * 15 14 13 43 43 H 0.96992 * 120.00530 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.47586 * 25.38384 * 25 24 9 45 45 H 1.09003 * 109.47191 * 145.38034 * 25 24 9 46 46 H 1.08991 * 115.54896 * 29.10513 * 26 25 24 47 47 H 1.08998 * 117.50129 * 0.02562 * 27 26 25 48 48 H 1.09008 * 117.49466 * 145.02141 * 27 26 25 49 49 H 1.09000 * 117.49583 * 252.51503 * 28 27 26 50 50 H 1.08998 * 117.49703 * 107.49055 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.3516 0.3062 5 6 4.5275 1.5190 -0.1306 6 6 4.5930 1.4474 -1.5994 7 6 4.6459 1.3886 -2.7709 8 6 4.7114 1.3170 -4.2396 9 6 3.0006 1.6343 1.6562 10 7 3.6662 1.0766 2.6400 11 7 3.2889 1.5778 3.7618 12 6 2.3683 2.4779 3.5619 13 6 1.6749 3.2966 4.6203 14 6 0.4180 2.5622 5.0911 15 6 -0.2863 3.3936 6.1651 16 6 -1.5247 2.6705 6.6284 17 1 -1.7833 1.7135 6.2000 18 6 -2.3269 3.2303 7.6000 19 7 -2.0118 4.3955 8.1221 20 14 -3.8616 2.3336 8.1748 21 1 -3.4815 1.0140 8.7399 22 1 -4.5452 3.1407 9.2171 23 1 -4.7784 2.1337 7.0238 24 7 2.1518 2.5458 2.2135 25 6 1.2045 3.4161 1.5126 26 6 1.8550 4.7773 1.2577 27 6 1.2268 5.9980 1.9330 28 6 1.0681 5.7916 0.4253 29 1 -1.0502 -0.0003 -0.0003 30 1 3.0095 -0.3035 -0.9815 31 1 3.0097 -0.6970 0.7543 32 1 4.8990 2.4880 0.2029 33 1 5.1409 0.7271 0.2995 34 1 5.7282 1.5307 -4.5689 35 1 4.4258 0.3176 -4.5678 36 1 4.0286 2.0497 -4.6699 37 1 2.3479 3.4432 5.4651 38 1 1.3959 4.2652 4.2055 39 1 -0.2549 2.4154 4.2463 40 1 0.6971 1.5935 5.5057 41 1 0.3865 3.5406 7.0100 42 1 -0.5654 4.3621 5.7500 43 1 -2.5764 4.7895 8.8053 44 1 0.9287 2.9614 0.5611 45 1 0.3119 3.5487 2.1241 46 1 2.9390 4.7665 1.1448 47 1 0.3503 5.8314 2.5591 48 1 1.8976 6.7906 2.2646 49 1 1.6345 6.4483 -0.2349 50 1 0.0869 5.4891 0.0593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346860504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = 191.373905 kcal Electronic energy + Delta-G solvation = -29062.214996 eV Core-core repulsion = 25287.153003 eV Total energy + Delta-G solvation = -3775.061993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15991 -39.38278 -38.75804 -36.65790 -35.40215 -35.09887 -34.42726 -33.94894 -31.56027 -30.36176 -29.03678 -28.54737 -27.96173 -25.92502 -25.55665 -23.32997 -22.79044 -22.42342 -21.81879 -21.36532 -19.48464 -18.61926 -18.39764 -18.06827 -17.53341 -16.98817 -16.58406 -16.27175 -15.98903 -15.91843 -15.56342 -15.37172 -15.23125 -14.74790 -14.41652 -14.35103 -14.29238 -14.19392 -13.97601 -13.76931 -13.75333 -13.28860 -13.06722 -12.80670 -12.68074 -12.63635 -12.46390 -12.41018 -11.99229 -11.70033 -11.58699 -11.57052 -11.43851 -11.33736 -11.26284 -11.09415 -11.00277 -10.93868 -10.73540 -10.52940 -10.12095 -10.03067 -8.18451 -6.28450 0.55862 0.85192 1.40470 1.42766 1.50550 1.59625 1.60497 1.70068 1.79765 1.86101 2.41792 2.70304 2.79828 3.14886 3.20189 3.26719 3.36819 3.59898 3.64567 3.82003 3.85766 3.96047 4.08359 4.13082 4.19667 4.26789 4.31005 4.33097 4.44096 4.48548 4.50927 4.64092 4.72572 4.77381 4.84726 4.85607 4.91371 4.95072 4.99077 5.01302 5.06664 5.09004 5.11219 5.17134 5.22213 5.34237 5.43042 5.51962 5.74243 5.86018 6.05353 6.26482 6.55265 6.63112 6.86679 7.39996 7.57397 8.92597 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.002600 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.411392 B =10765.427832 C =11267.213497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.224 4.224 3 C 0.174 3.826 4 N -0.452 5.452 5 C 0.192 3.808 6 C -0.222 4.222 7 C -0.155 4.155 8 C -0.046 4.046 9 C 0.343 3.657 10 N -0.335 5.335 11 N -0.322 5.322 12 C 0.207 3.793 13 C -0.025 4.025 14 C -0.083 4.083 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.266 1.266 24 N -0.449 5.449 25 C 0.143 3.857 26 C -0.178 4.178 27 C -0.181 4.181 28 C -0.146 4.146 29 H 0.245 0.755 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.041 0.959 41 H -0.003 1.003 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.111 0.889 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -1.528 -27.090 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.224 4.224 3 C 0.049 3.951 4 N -0.177 5.177 5 C 0.067 3.933 6 C -0.222 4.222 7 C -0.156 4.156 8 C -0.102 4.102 9 C -0.014 4.014 10 N -0.179 5.179 11 N -0.163 5.163 12 C -0.061 4.061 13 C -0.064 4.064 14 C -0.122 4.122 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.191 1.191 24 N -0.140 5.140 25 C 0.021 3.979 26 C -0.197 4.197 27 C -0.218 4.218 28 C -0.183 4.183 29 H 0.261 0.739 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.121 0.879 49 H 0.130 0.870 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.823 -1.953 -26.520 28.710 hybrid contribution -1.286 -0.078 0.638 1.437 sum 9.537 -2.031 -25.882 27.658 Atomic orbital electron populations 1.25685 0.96700 0.97290 0.99438 1.23037 0.94694 1.02748 1.01944 1.19123 0.85627 0.86835 1.03524 1.58553 1.23029 1.28892 1.07269 1.18767 0.85222 1.03667 0.85682 1.21719 1.04240 1.03194 0.93073 1.23266 0.97565 1.00004 0.94780 1.19161 1.04495 1.04447 0.82074 1.22194 0.94003 0.93645 0.91583 1.74440 1.24474 1.23803 0.95207 1.73988 1.13221 1.10504 1.18553 1.25107 0.97888 0.99469 0.83653 1.20166 0.96166 0.96619 0.93480 1.21336 0.94081 0.98411 0.98402 1.18951 0.93972 0.94729 0.93051 1.21598 1.09424 1.05559 1.21589 0.92834 1.25868 1.01259 0.95767 0.96472 1.70056 1.39956 1.18199 1.28542 0.85612 0.79339 0.78546 0.78233 1.19730 1.20694 1.19114 1.46376 1.30928 1.30117 1.06585 1.21611 0.89840 0.88369 0.98103 1.22371 0.99104 0.89508 1.08744 1.23201 1.03172 0.98986 0.96427 1.23036 1.01723 0.99973 0.93587 0.73882 0.85644 0.91253 0.88298 0.90015 0.88420 0.88580 0.88835 0.88669 0.88335 0.93168 0.94031 0.98479 0.97527 0.92735 0.87309 0.88475 0.88345 0.88594 0.87949 0.87035 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 19.25 74.32 1.43 -2.24 16 2 C -0.22 -5.37 13.23 31.13 0.41 -4.96 16 3 C 0.17 3.90 5.32 84.50 0.45 4.35 16 4 N -0.45 -10.67 4.40 -727.12 -3.20 -13.87 16 5 C 0.19 3.92 5.31 84.50 0.45 4.37 16 6 C -0.22 -4.21 12.23 31.12 0.38 -3.82 16 7 C -0.15 -2.47 14.13 31.12 0.44 -2.03 16 8 C -0.05 -0.34 10.32 70.17 0.72 0.38 16 9 C 0.34 10.09 5.97 260.11 1.55 11.64 16 10 N -0.34 -11.79 12.02 -58.01 -0.70 -12.49 16 11 N -0.32 -12.42 12.18 -49.53 -0.60 -13.02 16 12 C 0.21 7.09 7.32 137.64 1.01 8.10 16 13 C -0.02 -0.84 5.51 29.85 0.16 -0.68 16 14 C -0.08 -3.43 5.13 30.59 0.16 -3.28 16 15 C 0.03 1.53 4.97 29.85 0.15 1.68 16 16 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 17 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 20 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 N -0.45 -13.05 2.81 -514.86 -1.45 -14.50 16 25 C 0.14 3.30 6.14 86.38 0.53 3.83 16 26 C -0.18 -3.55 6.01 -10.79 -0.06 -3.61 16 27 C -0.18 -3.43 10.01 30.59 0.31 -3.13 16 28 C -0.15 -2.24 10.25 30.59 0.31 -1.93 16 29 H 0.24 3.47 7.80 -4.41 -0.03 3.44 16 30 H 0.13 2.29 6.84 -2.39 -0.02 2.27 16 31 H 0.07 1.69 7.89 -2.39 -0.02 1.68 16 32 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 33 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.10 0.46 8.14 -2.38 -0.02 0.45 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.10 2.99 7.81 -2.39 -0.02 2.97 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.11 2.38 8.12 -2.39 -0.02 2.36 16 45 H 0.10 2.31 7.78 -2.39 -0.02 2.29 16 46 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.10 2.01 8.03 -2.39 -0.02 1.99 16 48 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.69 435.47 6.37 -65.32 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.91 Total: 18.53 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 9.10 Total: -21.02 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -5.66 Total: -108.88 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.69 6.37 -65.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346860504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.695 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds