Wall clock time and date at job start Sat Apr 11 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.62448 * 2 1 4 4 C 1.53244 * 109.62802 * 120.38488 * 2 1 3 5 5 N 1.46899 * 109.33698 * 66.07623 * 4 2 1 6 6 C 1.46906 * 111.00070 * 187.25287 * 5 4 2 7 7 C 1.50695 * 109.47481 * 164.00995 * 6 5 4 8 8 C 1.35077 * 126.08057 * 103.14608 * 7 6 5 9 9 N 1.35034 * 107.98066 * 179.97438 * 8 7 6 10 10 H 0.97004 * 125.92896 * 179.97438 * 9 8 7 11 11 N 1.40069 * 108.14134 * 359.75643 * 9 8 7 12 12 C 1.31625 * 108.10383 * 0.41461 * 11 9 8 13 13 C 1.48420 * 126.03184 * 179.84955 * 12 11 9 14 14 C 1.39317 * 120.12701 * 317.18371 * 13 12 11 15 15 C 1.38013 * 119.88362 * 179.97438 * 14 13 12 16 16 C 1.38324 * 120.12182 * 359.97438 * 15 14 13 17 17 C 1.38325 * 120.23588 * 0.25610 * 16 15 14 18 18 C 1.38026 * 120.12028 * 359.48895 * 17 16 15 19 19 C 1.46899 * 111.26974 * 63.10545 * 5 4 2 20 20 C 1.53233 * 109.34116 * 296.89147 * 19 5 4 21 21 H 1.09007 * 109.62742 * 294.12384 * 20 19 5 22 22 C 1.52993 * 109.79312 * 173.63558 * 20 19 5 23 23 N 1.47074 * 109.78908 * 239.51125 * 2 1 3 24 24 C 1.36941 * 120.88193 * 111.35643 * 23 2 1 25 25 H 1.07998 * 120.00323 * 150.50077 * 24 23 2 26 26 C 1.38815 * 120.00099 * 330.50759 * 24 23 2 27 27 N 1.31623 * 119.99279 * 346.84022 * 26 24 23 28 28 Si 1.86793 * 120.00346 * 166.84362 * 26 24 23 29 29 H 1.48494 * 109.47199 * 89.99712 * 28 26 24 30 30 H 1.48498 * 109.47344 * 210.00114 * 28 26 24 31 31 H 1.48506 * 109.46803 * 329.99658 * 28 26 24 32 32 H 1.08998 * 109.47003 * 299.61306 * 1 2 3 33 33 H 1.08994 * 109.47310 * 59.61605 * 1 2 3 34 34 H 1.09002 * 109.47025 * 179.61434 * 1 2 3 35 35 H 1.08993 * 109.49320 * 306.11969 * 4 2 1 36 36 H 1.08995 * 109.51390 * 186.04714 * 4 2 1 37 37 H 1.08999 * 109.46866 * 44.00502 * 6 5 4 38 38 H 1.09001 * 109.46904 * 284.00909 * 6 5 4 39 39 H 1.08003 * 126.00883 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.05695 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.94309 * 180.02562 * 15 14 13 42 42 H 1.07996 * 119.88478 * 179.97438 * 16 15 14 43 43 H 1.07997 * 119.93710 * 179.74235 * 17 16 15 44 44 H 1.07996 * 120.05698 * 180.25480 * 18 17 16 45 45 H 1.08998 * 109.49624 * 56.85548 * 19 5 4 46 46 H 1.09009 * 109.49164 * 176.93300 * 19 5 4 47 47 H 1.09002 * 109.47227 * 302.65419 * 22 20 19 48 48 H 1.09006 * 109.47102 * 62.65116 * 22 20 19 49 49 H 1.08998 * 109.47852 * 182.65118 * 22 20 19 50 50 H 0.97002 * 119.99295 * 185.02149 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7301 1.2451 5 7 1.6787 -2.1503 1.1624 6 6 2.0018 -2.8510 2.4125 7 6 1.2763 -4.1712 2.4504 8 6 1.8206 -5.3851 2.2162 9 7 0.8464 -6.3110 2.3467 10 1 0.9524 -7.2686 2.2335 11 7 -0.3426 -5.6492 2.6788 12 6 -0.0900 -4.3588 2.7369 13 6 -1.0703 -3.2906 3.0545 14 6 -2.3469 -3.3252 2.4977 15 6 -3.2547 -2.3296 2.7968 16 6 -2.8993 -1.2990 3.6482 17 6 -1.6316 -1.2572 4.2001 18 6 -0.7176 -2.2505 3.9118 19 6 2.3225 -2.8004 0.0131 20 6 1.8191 -2.1553 -1.2825 21 1 0.7569 -2.3655 -1.4075 22 6 2.5974 -2.7135 -2.4756 23 7 2.0280 -0.7021 -1.1925 24 6 2.6686 -0.0210 -2.1929 25 1 3.4182 -0.5182 -2.7907 26 6 2.3547 1.3087 -2.4387 27 7 1.2780 1.8409 -1.9003 28 14 3.4602 2.3425 -3.5335 29 1 3.0040 2.2327 -4.9423 30 1 3.3968 3.7619 -3.1018 31 1 4.8587 1.8546 -3.4265 32 1 -0.3633 0.5078 0.8934 33 1 -0.3633 0.5197 -0.8865 34 1 -0.3633 -1.0277 -0.0069 35 1 1.5965 -0.2903 2.1360 36 1 3.1294 -0.6366 1.2997 37 1 1.6916 -2.2414 3.2612 38 1 3.0765 -3.0254 2.4640 39 1 2.8536 -5.5807 1.9689 40 1 -2.6259 -4.1301 1.8338 41 1 -4.2448 -2.3557 2.3661 42 1 -3.6126 -0.5217 3.8794 43 1 -1.3579 -0.4481 4.8609 44 1 0.2705 -2.2191 4.3465 45 1 3.4032 -2.6781 0.0843 46 1 2.0756 -3.8622 0.0105 47 1 3.6629 -2.5360 -2.3296 48 1 2.4156 -3.7851 -2.5587 49 1 2.2681 -2.2173 -3.3885 50 1 1.0186 2.7471 -2.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353604733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:19 Heat of formation + Delta-G solvation = 138.056463 kcal Electronic energy + Delta-G solvation = -31079.290770 eV Core-core repulsion = 27301.916760 eV Total energy + Delta-G solvation = -3777.374010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.22238 -38.66682 -38.31323 -34.87757 -32.74940 -32.41883 -31.63326 -30.76721 -29.99970 -29.49768 -27.71500 -26.22935 -25.48704 -23.84966 -23.41334 -22.42808 -21.82971 -20.65356 -20.44693 -19.55627 -18.43475 -17.63941 -16.61179 -16.14760 -15.27021 -15.21968 -15.03061 -14.62467 -14.42207 -14.05242 -13.93634 -13.75500 -13.64221 -13.27251 -13.10175 -13.04532 -12.86551 -12.43587 -12.21823 -11.98082 -11.65630 -11.45040 -11.14850 -11.02355 -10.94282 -10.85479 -10.79216 -10.55674 -10.47980 -10.43310 -10.33297 -9.95269 -9.78278 -9.75464 -9.35840 -9.11851 -8.73129 -8.62421 -8.37386 -8.18849 -7.57307 -6.44711 -5.67503 -3.10287 1.25696 1.61532 1.99356 2.81555 2.89048 3.41012 3.48477 3.49339 4.03602 4.51936 4.55135 4.65629 4.91498 5.07202 5.13392 5.24065 5.32171 5.37652 5.43027 5.48373 5.60817 5.67444 5.79402 5.85047 5.94392 6.05146 6.07456 6.16112 6.20413 6.24307 6.28180 6.34988 6.41583 6.44324 6.46038 6.54110 6.67582 6.70644 6.75135 6.76919 6.99593 7.06520 7.14182 7.17341 7.26088 7.27292 7.38116 7.66553 7.70346 7.79529 7.84977 8.00452 8.10815 8.59248 9.35390 9.96802 10.56813 11.40533 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.004029 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.461603 B = 6947.670960 C = 8313.050676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.202 3.798 3 H 0.091 0.909 4 C 0.043 3.957 5 N -0.518 5.518 6 C 0.124 3.876 7 C -0.198 4.198 8 C 0.056 3.944 9 N -0.479 5.479 10 H 0.438 0.562 11 N -0.290 5.290 12 C 0.138 3.862 13 C 0.003 3.997 14 C -0.091 4.091 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.090 4.090 19 C 0.054 3.946 20 C 0.173 3.827 21 H 0.030 0.970 22 C -0.137 4.137 23 N -0.584 5.584 24 C -0.246 4.246 25 H 0.066 0.934 26 C 0.004 3.996 27 N -0.900 5.900 28 Si 0.897 3.103 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.018 0.982 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.173 0.827 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.023 0.977 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -12.122 12.202 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.095 3.905 3 H 0.109 0.891 4 C -0.086 4.086 5 N -0.242 5.242 6 C -0.005 4.005 7 C -0.210 4.210 8 C -0.091 4.091 9 N -0.187 5.187 10 H 0.281 0.719 11 N -0.113 5.113 12 C -0.028 4.028 13 C 0.001 3.999 14 C -0.110 4.110 15 C -0.138 4.138 16 C -0.133 4.133 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.075 4.075 20 C 0.066 3.934 21 H 0.048 0.952 22 C -0.195 4.195 23 N -0.307 5.307 24 C -0.376 4.376 25 H 0.084 0.916 26 C -0.194 4.194 27 N -0.545 5.545 28 Si 0.728 3.272 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.190 0.810 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.082 0.918 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.679 -12.863 12.254 18.142 hybrid contribution 2.173 0.663 -0.804 2.410 sum -1.506 -12.200 11.450 16.799 Atomic orbital electron populations 1.21909 0.97817 0.99100 1.00086 1.20342 0.92643 0.95454 0.82031 0.89082 1.22859 0.97167 0.87615 1.00938 1.61863 1.58831 1.02316 1.01152 1.20422 0.95377 0.90645 0.94007 1.20033 0.93439 0.95041 1.12483 1.22285 0.95456 0.89282 1.02120 1.46100 1.06396 1.09214 1.57031 0.71877 1.77536 1.04421 1.05970 1.23411 1.20556 0.92919 0.90726 0.98609 1.17631 0.91697 0.92767 0.97768 1.21105 0.92435 0.98596 0.98847 1.21012 0.99497 0.94759 0.98582 1.21156 0.96607 0.98159 0.97379 1.20992 0.93702 0.98402 1.00553 1.21050 0.99184 0.93402 0.97262 1.22591 0.95374 0.97130 0.92441 1.20426 0.96281 0.85940 0.90762 0.95240 1.21795 1.00233 0.97844 0.99587 1.44240 1.66938 1.00928 1.18619 1.19144 1.14019 0.93315 1.11140 0.91608 1.25082 0.96627 0.98633 0.99064 1.69935 1.23607 1.15202 1.45772 0.86371 0.80508 0.79937 0.80421 1.21645 1.21747 1.20756 0.96324 0.91077 0.94885 0.92342 0.96184 0.90564 0.95061 0.81004 0.86203 0.86136 0.86279 0.86019 0.86035 0.95906 0.92602 0.93203 0.94578 0.91788 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.97 37.16 0.33 -2.69 16 2 C 0.20 4.72 2.33 -67.49 -0.16 4.56 16 3 H 0.09 2.42 6.22 -51.93 -0.32 2.10 16 4 C 0.04 0.84 4.99 -3.70 -0.02 0.82 16 5 N -0.52 -9.11 4.08 -235.76 -0.96 -10.08 16 6 C 0.12 1.80 5.01 -4.98 -0.02 1.77 16 7 C -0.20 -2.74 4.84 -104.76 -0.51 -3.25 16 8 C 0.06 0.62 11.28 -17.27 -0.19 0.43 16 9 N -0.48 -5.25 7.35 30.42 0.22 -5.03 16 10 H 0.44 3.18 8.96 -182.62 -1.64 1.54 16 11 N -0.29 -4.18 12.74 33.43 0.43 -3.75 16 12 C 0.14 2.05 6.67 -82.78 -0.55 1.50 16 13 C 0.00 0.05 5.74 -104.90 -0.60 -0.55 16 14 C -0.09 -1.30 9.78 -39.26 -0.38 -1.68 16 15 C -0.12 -1.53 10.03 -39.63 -0.40 -1.93 16 16 C -0.11 -1.38 10.04 -39.52 -0.40 -1.78 16 17 C -0.12 -1.45 10.03 -39.63 -0.40 -1.85 16 18 C -0.09 -1.20 8.86 -39.25 -0.35 -1.55 16 19 C 0.05 0.99 4.76 -3.70 -0.02 0.97 16 20 C 0.17 3.68 3.25 -67.50 -0.22 3.46 16 21 H 0.03 0.70 7.62 -51.92 -0.40 0.30 16 22 C -0.14 -2.62 7.97 37.15 0.30 -2.32 16 23 N -0.58 -14.25 2.73 -157.01 -0.43 -14.68 16 24 C -0.25 -6.55 8.62 -15.06 -0.13 -6.68 16 25 H 0.07 1.73 6.27 -52.49 -0.33 1.40 16 26 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 27 N -0.90 -25.26 9.63 55.49 0.53 -24.73 16 28 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 31 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.88 6.76 -51.93 -0.35 1.53 16 34 H 0.03 0.76 7.09 -51.93 -0.37 0.40 16 35 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 1.05 5.33 -51.93 -0.28 0.77 16 38 H 0.03 0.43 8.04 -51.93 -0.42 0.01 16 39 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.48 6.19 -52.49 -0.32 1.16 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.94 6.84 -51.92 -0.36 0.58 16 47 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 1.32 7.45 -51.93 -0.39 0.94 16 50 H 0.25 6.94 8.32 -40.82 -0.34 6.60 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -30.88 389.17 -12.09 -42.97 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.92 Total: 3.69 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.81 Total: -10.75 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.21 Total: -58.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.88 -12.09 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353604733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.031 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds