Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.62448 * 2 1 4 4 C 1.53244 * 109.62802 * 120.38488 * 2 1 3 5 5 N 1.46899 * 109.33698 * 66.07623 * 4 2 1 6 6 C 1.46906 * 111.00070 * 187.25287 * 5 4 2 7 7 C 1.50695 * 109.47481 * 164.00995 * 6 5 4 8 8 C 1.35077 * 126.08057 * 103.14608 * 7 6 5 9 9 N 1.35034 * 107.98066 * 179.97438 * 8 7 6 10 10 H 0.97004 * 125.92896 * 179.97438 * 9 8 7 11 11 N 1.40069 * 108.14134 * 359.75643 * 9 8 7 12 12 C 1.31625 * 108.10383 * 0.41461 * 11 9 8 13 13 C 1.48420 * 126.03184 * 179.84955 * 12 11 9 14 14 C 1.39317 * 120.12701 * 317.18371 * 13 12 11 15 15 C 1.38013 * 119.88362 * 179.97438 * 14 13 12 16 16 C 1.38324 * 120.12182 * 359.97438 * 15 14 13 17 17 C 1.38325 * 120.23588 * 0.25610 * 16 15 14 18 18 C 1.38026 * 120.12028 * 359.48895 * 17 16 15 19 19 C 1.46899 * 111.26974 * 63.10545 * 5 4 2 20 20 C 1.53233 * 109.34116 * 296.89147 * 19 5 4 21 21 H 1.09007 * 109.62742 * 294.12384 * 20 19 5 22 22 C 1.52993 * 109.79312 * 173.63558 * 20 19 5 23 23 N 1.47074 * 109.78908 * 239.51125 * 2 1 3 24 24 C 1.36941 * 120.88193 * 111.35643 * 23 2 1 25 25 H 1.07998 * 120.00323 * 150.50077 * 24 23 2 26 26 C 1.38815 * 120.00099 * 330.50759 * 24 23 2 27 27 N 1.31623 * 119.99279 * 346.84022 * 26 24 23 28 28 Si 1.86793 * 120.00346 * 166.84362 * 26 24 23 29 29 H 1.48494 * 109.47199 * 89.99712 * 28 26 24 30 30 H 1.48498 * 109.47344 * 210.00114 * 28 26 24 31 31 H 1.48506 * 109.46803 * 329.99658 * 28 26 24 32 32 H 1.08998 * 109.47003 * 299.61306 * 1 2 3 33 33 H 1.08994 * 109.47310 * 59.61605 * 1 2 3 34 34 H 1.09002 * 109.47025 * 179.61434 * 1 2 3 35 35 H 1.08993 * 109.49320 * 306.11969 * 4 2 1 36 36 H 1.08995 * 109.51390 * 186.04714 * 4 2 1 37 37 H 1.08999 * 109.46866 * 44.00502 * 6 5 4 38 38 H 1.09001 * 109.46904 * 284.00909 * 6 5 4 39 39 H 1.08003 * 126.00883 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.05695 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.94309 * 180.02562 * 15 14 13 42 42 H 1.07996 * 119.88478 * 179.97438 * 16 15 14 43 43 H 1.07997 * 119.93710 * 179.74235 * 17 16 15 44 44 H 1.07996 * 120.05698 * 180.25480 * 18 17 16 45 45 H 1.08998 * 109.49624 * 56.85548 * 19 5 4 46 46 H 1.09009 * 109.49164 * 176.93300 * 19 5 4 47 47 H 1.09002 * 109.47227 * 302.65419 * 22 20 19 48 48 H 1.09006 * 109.47102 * 62.65116 * 22 20 19 49 49 H 1.08998 * 109.47852 * 182.65118 * 22 20 19 50 50 H 0.97002 * 119.99295 * 185.02149 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7301 1.2451 5 7 1.6787 -2.1503 1.1624 6 6 2.0018 -2.8510 2.4125 7 6 1.2763 -4.1712 2.4504 8 6 1.8206 -5.3851 2.2162 9 7 0.8464 -6.3110 2.3467 10 1 0.9524 -7.2686 2.2335 11 7 -0.3426 -5.6492 2.6788 12 6 -0.0900 -4.3588 2.7369 13 6 -1.0703 -3.2906 3.0545 14 6 -2.3469 -3.3252 2.4977 15 6 -3.2547 -2.3296 2.7968 16 6 -2.8993 -1.2990 3.6482 17 6 -1.6316 -1.2572 4.2001 18 6 -0.7176 -2.2505 3.9118 19 6 2.3225 -2.8004 0.0131 20 6 1.8191 -2.1553 -1.2825 21 1 0.7569 -2.3655 -1.4075 22 6 2.5974 -2.7135 -2.4756 23 7 2.0280 -0.7021 -1.1925 24 6 2.6686 -0.0210 -2.1929 25 1 3.4182 -0.5182 -2.7907 26 6 2.3547 1.3087 -2.4387 27 7 1.2780 1.8409 -1.9003 28 14 3.4602 2.3425 -3.5335 29 1 3.0040 2.2327 -4.9423 30 1 3.3968 3.7619 -3.1018 31 1 4.8587 1.8546 -3.4265 32 1 -0.3633 0.5078 0.8934 33 1 -0.3633 0.5197 -0.8865 34 1 -0.3633 -1.0277 -0.0069 35 1 1.5965 -0.2903 2.1360 36 1 3.1294 -0.6366 1.2997 37 1 1.6916 -2.2414 3.2612 38 1 3.0765 -3.0254 2.4640 39 1 2.8536 -5.5807 1.9689 40 1 -2.6259 -4.1301 1.8338 41 1 -4.2448 -2.3557 2.3661 42 1 -3.6126 -0.5217 3.8794 43 1 -1.3579 -0.4481 4.8609 44 1 0.2705 -2.2191 4.3465 45 1 3.4032 -2.6781 0.0843 46 1 2.0756 -3.8622 0.0105 47 1 3.6629 -2.5360 -2.3296 48 1 2.4156 -3.7851 -2.5587 49 1 2.2681 -2.2173 -3.3885 50 1 1.0186 2.7471 -2.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353604733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = 120.559316 kcal Electronic energy + Delta-G solvation = -31080.049503 eV Core-core repulsion = 27301.916760 eV Total energy + Delta-G solvation = -3778.132744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.18535 -39.91651 -39.61845 -36.44904 -34.19510 -33.78399 -33.23843 -31.84794 -31.25609 -30.46853 -29.53733 -27.68412 -26.95943 -25.69180 -24.39298 -23.60733 -23.15316 -22.27117 -21.48674 -20.53482 -20.25113 -18.59378 -17.94581 -17.55540 -17.02362 -16.37316 -16.17781 -15.92896 -15.71689 -15.61594 -15.40498 -15.19635 -14.76730 -14.65774 -14.54121 -14.25661 -13.92132 -13.68792 -13.46510 -13.39848 -13.27203 -13.09638 -12.76484 -12.71332 -12.44083 -12.27963 -12.17907 -12.13945 -11.99824 -11.95706 -11.78419 -11.56643 -11.50997 -11.15012 -10.95923 -10.70471 -10.39766 -9.72074 -9.60866 -9.19641 -8.96776 -8.38454 -7.72439 -5.16482 0.26887 0.62482 1.07714 1.49127 1.51292 1.58802 1.82091 2.04590 2.57904 3.04524 3.28499 3.43163 3.61625 3.69868 3.99690 4.10608 4.19731 4.22367 4.33713 4.36579 4.44210 4.47897 4.59351 4.67524 4.68203 4.68967 4.74707 4.80883 4.85591 4.87361 4.94581 4.96331 5.08044 5.10719 5.17580 5.22030 5.25097 5.34659 5.41378 5.46996 5.47231 5.60361 5.70543 5.71625 5.76306 5.78074 5.86221 6.09670 6.18783 6.40631 6.48054 6.50259 6.58638 6.74550 7.32371 8.02544 8.57318 9.33585 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.004029 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.461603 B = 6947.670960 C = 8313.050676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.201 3.799 3 H 0.055 0.945 4 C 0.059 3.941 5 N -0.526 5.526 6 C 0.131 3.869 7 C -0.226 4.226 8 C 0.077 3.923 9 N -0.465 5.465 10 H 0.454 0.546 11 N -0.320 5.320 12 C 0.123 3.877 13 C -0.015 4.015 14 C -0.113 4.113 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.100 4.100 19 C 0.069 3.931 20 C 0.166 3.834 21 H 0.003 0.997 22 C -0.127 4.127 23 N -0.598 5.598 24 C -0.250 4.250 25 H 0.068 0.932 26 C -0.046 4.046 27 N -0.925 5.925 28 Si 0.956 3.044 29 H -0.291 1.291 30 H -0.297 1.297 31 H -0.274 1.274 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.211 0.789 40 H 0.112 0.888 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.040 0.960 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -13.608 13.241 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.073 0.927 4 C -0.071 4.071 5 N -0.250 5.250 6 C 0.003 3.997 7 C -0.237 4.237 8 C -0.071 4.071 9 N -0.175 5.175 10 H 0.301 0.699 11 N -0.145 5.145 12 C -0.042 4.042 13 C -0.017 4.017 14 C -0.132 4.132 15 C -0.146 4.146 16 C -0.139 4.139 17 C -0.141 4.141 18 C -0.119 4.119 19 C -0.061 4.061 20 C 0.060 3.940 21 H 0.021 0.979 22 C -0.185 4.185 23 N -0.321 5.321 24 C -0.380 4.380 25 H 0.086 0.914 26 C -0.242 4.242 27 N -0.571 5.571 28 Si 0.786 3.214 29 H -0.218 1.218 30 H -0.224 1.224 31 H -0.199 1.199 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.033 0.967 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.227 0.773 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.042 0.958 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.289 -14.403 13.304 19.740 hybrid contribution 1.691 1.026 -1.119 2.273 sum -0.598 -13.377 12.185 18.104 Atomic orbital electron populations 1.21637 0.98074 0.98108 0.98775 1.20218 0.92252 0.94317 0.83782 0.92722 1.22526 0.96638 0.88789 0.99107 1.61789 1.59098 1.01420 1.02660 1.20382 0.96367 0.90799 0.92142 1.20045 0.93209 0.95637 1.14858 1.22797 0.96676 0.88246 0.99419 1.46151 1.05543 1.10158 1.55628 0.69943 1.77483 1.06142 1.06180 1.24646 1.20715 0.93584 0.90911 0.98986 1.17870 0.91983 0.93475 0.98397 1.21214 0.93145 0.99231 0.99628 1.21288 1.00070 0.94552 0.98659 1.21500 0.97173 0.98407 0.96814 1.21345 0.93588 0.98632 1.00492 1.21235 0.99927 0.93441 0.97275 1.22361 0.95092 0.97724 0.90892 1.20596 0.95282 0.84489 0.93635 0.97935 1.21687 0.99716 0.99585 0.97502 1.44469 1.66825 1.02308 1.18543 1.19422 1.13825 0.93583 1.11177 0.91418 1.25719 0.97848 0.99781 1.00835 1.70116 1.25023 1.14897 1.47077 0.85442 0.79296 0.78066 0.78630 1.21813 1.22386 1.19906 0.95123 0.94772 0.95380 0.90847 0.96654 0.90080 0.93447 0.77263 0.87002 0.84475 0.83925 0.83751 0.85130 0.95813 0.90554 0.93064 0.91227 0.94081 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.08 8.97 71.98 0.65 -4.43 16 2 C 0.20 9.51 2.33 44.96 0.10 9.61 16 3 H 0.05 2.99 6.22 -2.39 -0.01 2.98 16 4 C 0.06 2.22 4.99 86.39 0.43 2.65 16 5 N -0.53 -17.56 4.08 -899.82 -3.68 -21.24 16 6 C 0.13 3.43 5.01 85.55 0.43 3.86 16 7 C -0.23 -5.67 4.84 -19.96 -0.10 -5.77 16 8 C 0.08 1.44 11.28 83.47 0.94 2.38 16 9 N -0.47 -8.92 7.35 -57.68 -0.42 -9.34 16 10 H 0.45 5.25 8.96 -213.34 -1.91 3.33 16 11 N -0.32 -8.84 12.74 -48.15 -0.61 -9.45 16 12 C 0.12 3.53 6.67 42.53 0.28 3.81 16 13 C -0.02 -0.45 5.74 -20.04 -0.12 -0.56 16 14 C -0.11 -3.27 9.78 22.48 0.22 -3.05 16 15 C -0.13 -3.20 10.03 22.24 0.22 -2.98 16 16 C -0.12 -2.76 10.04 22.31 0.22 -2.54 16 17 C -0.12 -2.83 10.03 22.24 0.22 -2.61 16 18 C -0.10 -2.57 8.86 22.48 0.20 -2.37 16 19 C 0.07 2.34 4.76 86.38 0.41 2.76 16 20 C 0.17 6.96 3.25 44.96 0.15 7.11 16 21 H 0.00 0.14 7.62 -2.38 -0.02 0.12 16 22 C -0.13 -4.70 7.97 71.98 0.57 -4.12 16 23 N -0.60 -29.40 2.73 -650.66 -1.77 -31.18 16 24 C -0.25 -13.39 8.62 84.03 0.72 -12.66 16 25 H 0.07 3.54 6.27 -2.91 -0.02 3.53 16 26 C -0.05 -2.56 5.01 84.86 0.43 -2.13 16 27 N -0.92 -53.52 9.63 21.65 0.21 -53.31 16 28 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 29 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 30 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 31 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 1.85 6.76 -2.39 -0.02 1.83 16 34 H 0.03 1.32 7.09 -2.39 -0.02 1.30 16 35 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 36 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 2.03 5.33 -2.39 -0.01 2.02 16 38 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 39 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.13 3.00 6.19 -2.91 -0.02 2.98 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 2.30 6.84 -2.38 -0.02 2.28 16 47 H 0.05 1.86 7.67 -2.39 -0.02 1.85 16 48 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.04 1.68 7.45 -2.39 -0.02 1.66 16 50 H 0.24 13.94 8.32 -92.71 -0.77 13.17 16 Total: -1.00 -68.77 389.17 0.78 -67.99 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.96 Total: 20.65 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.99 Total: -11.05 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.28 Total: -124.53 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.77 0.78 -67.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353604733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.545 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds