Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.62817 * 2 1 4 4 C 1.53239 * 109.62798 * 239.60760 * 2 1 3 5 5 N 1.46895 * 109.33810 * 186.46144 * 4 2 1 6 6 C 1.46903 * 110.99940 * 187.25881 * 5 4 2 7 7 C 1.50707 * 109.47166 * 163.83081 * 6 5 4 8 8 C 1.35084 * 126.07501 * 106.59076 * 7 6 5 9 9 N 1.35035 * 107.97876 * 180.25659 * 8 7 6 10 10 H 0.97004 * 125.93641 * 179.76144 * 9 8 7 11 11 N 1.40076 * 108.13686 * 359.73282 * 9 8 7 12 12 C 1.31615 * 108.11034 * 359.97438 * 11 9 8 13 13 C 1.48414 * 126.03953 * 180.02562 * 12 11 9 14 14 C 1.39328 * 120.12040 * 136.68701 * 13 12 11 15 15 C 1.38028 * 119.87862 * 179.72583 * 14 13 12 16 16 C 1.38321 * 120.11705 * 0.57282 * 15 14 13 17 17 C 1.38316 * 120.24299 * 359.69714 * 16 15 14 18 18 C 1.38022 * 120.11829 * 0.02562 * 17 16 15 19 19 C 1.46900 * 111.27200 * 63.10734 * 5 4 2 20 20 C 1.53235 * 109.33744 * 296.89381 * 19 5 4 21 21 H 1.09008 * 109.78955 * 173.63080 * 20 19 5 22 22 C 1.52996 * 109.63469 * 294.11586 * 20 19 5 23 23 N 1.47081 * 108.52464 * 53.82990 * 20 19 5 24 24 C 1.36937 * 120.88524 * 128.78780 * 23 20 19 25 25 H 1.07999 * 119.99924 * 208.87292 * 24 23 20 26 26 C 1.38815 * 119.99891 * 28.86811 * 24 23 20 27 27 N 1.31621 * 119.99834 * 13.36360 * 26 24 23 28 28 Si 1.86796 * 120.00105 * 193.35758 * 26 24 23 29 29 H 1.48499 * 109.47148 * 60.00299 * 28 26 24 30 30 H 1.48498 * 109.47167 * 180.02562 * 28 26 24 31 31 H 1.48499 * 109.47148 * 300.00289 * 28 26 24 32 32 H 1.08999 * 109.46792 * 180.39017 * 1 2 3 33 33 H 1.08997 * 109.47125 * 300.39005 * 1 2 3 34 34 H 1.08999 * 109.46982 * 60.39108 * 1 2 3 35 35 H 1.08996 * 109.48865 * 66.50611 * 4 2 1 36 36 H 1.08992 * 109.51664 * 306.43643 * 4 2 1 37 37 H 1.08993 * 109.47290 * 43.83157 * 6 5 4 38 38 H 1.09004 * 109.46638 * 283.82277 * 6 5 4 39 39 H 1.08003 * 126.01141 * 359.96048 * 8 7 6 40 40 H 1.08002 * 120.05828 * 359.97438 * 14 13 12 41 41 H 1.07997 * 119.93767 * 180.31440 * 15 14 13 42 42 H 1.07997 * 119.87553 * 179.72780 * 16 15 14 43 43 H 1.07994 * 119.94330 * 180.02562 * 17 16 15 44 44 H 1.08009 * 120.05931 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.48847 * 56.85219 * 19 5 4 46 46 H 1.09000 * 109.49473 * 176.93739 * 19 5 4 47 47 H 1.09000 * 109.47782 * 179.02535 * 22 20 19 48 48 H 1.09002 * 109.47123 * 299.03591 * 22 20 19 49 49 H 1.09003 * 109.46737 * 59.03214 * 22 20 19 50 50 H 0.97003 * 119.99998 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7302 -1.2450 5 7 3.5054 -0.8625 -1.1622 6 6 4.0568 -1.4021 -2.4123 7 6 5.5435 -1.1583 -2.4522 8 6 6.5071 -2.0895 -2.2821 9 7 7.7046 -1.4737 -2.3838 10 1 8.5724 -1.8989 -2.3003 11 7 7.4759 -0.1140 -2.6315 12 6 6.1750 0.0803 -2.6777 13 6 5.4938 1.3767 -2.9184 14 6 4.4008 1.4429 -3.7798 15 6 3.7675 2.6502 -3.9956 16 6 4.2235 3.7951 -3.3676 17 6 5.3117 3.7362 -2.5158 18 6 5.9488 2.5331 -2.2885 19 6 3.9016 -1.6871 -0.0129 20 6 3.4629 -0.9962 1.2826 21 1 3.6513 -1.6520 2.1327 22 6 4.2416 0.3091 1.4582 23 7 2.0241 -0.7048 1.1927 24 6 1.1671 -1.0802 2.1926 25 1 0.1348 -1.3009 1.9645 26 6 1.6252 -1.1772 3.4994 27 7 2.7921 -0.6642 3.8274 28 14 0.5856 -2.0354 4.7924 29 1 0.3562 -3.4455 4.3871 30 1 1.2932 -2.0038 6.0975 31 1 -0.7196 -1.3387 4.9205 32 1 -0.3633 -1.0276 0.0070 33 1 -0.3633 0.5199 0.8864 34 1 -0.3633 0.5077 -0.8935 35 1 1.7811 -0.1603 -2.1359 36 1 1.5924 -1.7203 -1.2995 37 1 3.5847 -0.9075 -3.2611 38 1 3.8630 -2.4736 -2.4622 39 1 6.3479 -3.1409 -2.0929 40 1 4.0472 0.5504 -4.2746 41 1 2.9170 2.7016 -4.6592 42 1 3.7278 4.7385 -3.5427 43 1 5.6634 4.6330 -2.0278 44 1 6.7982 2.4881 -1.6228 45 1 3.4233 -2.6640 -0.0841 46 1 4.9845 -1.8112 -0.0102 47 1 3.9153 0.8069 2.3713 48 1 5.3074 0.0902 1.5245 49 1 4.0569 0.9601 0.6036 50 1 3.1125 -0.7323 4.7405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353604736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = 137.693780 kcal Electronic energy + Delta-G solvation = -31133.863543 eV Core-core repulsion = 27356.473805 eV Total energy + Delta-G solvation = -3777.389737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18205 -38.67307 -38.31341 -34.87497 -32.73172 -32.45586 -31.49959 -30.75898 -30.14239 -29.48984 -27.69196 -25.93584 -25.73940 -23.82099 -23.40126 -22.44881 -21.79376 -20.71244 -20.45467 -19.48982 -18.43565 -17.57071 -16.61406 -16.11834 -15.41277 -15.20816 -14.90035 -14.63904 -14.34085 -14.11424 -14.01134 -13.78711 -13.59081 -13.26793 -13.06328 -13.03603 -12.72455 -12.44474 -12.42223 -11.78791 -11.71288 -11.42090 -11.16505 -11.06283 -10.97551 -10.85903 -10.77434 -10.60608 -10.49359 -10.41527 -10.31458 -9.93464 -9.76709 -9.72368 -9.34724 -9.13300 -8.74612 -8.58917 -8.37347 -8.18166 -7.57007 -6.47599 -5.66511 -3.10545 1.26345 1.60105 2.03000 2.84137 2.93195 3.41996 3.47981 3.48501 4.02603 4.53116 4.56376 4.66413 4.95306 5.06762 5.11531 5.23716 5.33662 5.40018 5.42970 5.49448 5.60272 5.68095 5.79962 5.87034 5.93231 5.99680 6.08146 6.19102 6.21555 6.24186 6.28167 6.35683 6.42898 6.45696 6.47350 6.54883 6.65777 6.70946 6.76527 6.77379 6.98605 7.07110 7.13055 7.17436 7.25514 7.30366 7.37935 7.68307 7.71422 7.79996 7.84071 8.00410 8.08898 8.57816 9.35175 9.97065 10.56653 11.40338 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003956 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.251022 B = 7076.501998 C = 7888.335841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.032 0.968 4 C 0.052 3.948 5 N -0.518 5.518 6 C 0.126 3.874 7 C -0.198 4.198 8 C 0.056 3.944 9 N -0.479 5.479 10 H 0.438 0.562 11 N -0.290 5.290 12 C 0.137 3.863 13 C 0.007 3.993 14 C -0.090 4.090 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.089 4.089 19 C 0.046 3.954 20 C 0.201 3.799 21 H 0.091 0.909 22 C -0.129 4.129 23 N -0.584 5.584 24 C -0.246 4.246 25 H 0.067 0.933 26 C 0.002 3.998 27 N -0.900 5.900 28 Si 0.898 3.102 29 H -0.287 1.287 30 H -0.292 1.292 31 H -0.285 1.285 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.173 0.827 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.018 0.982 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.014 0.986 49 H 0.033 0.967 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 1.257 -16.174 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.050 0.950 4 C -0.078 4.078 5 N -0.242 5.242 6 C -0.003 4.003 7 C -0.210 4.210 8 C -0.091 4.091 9 N -0.187 5.187 10 H 0.281 0.719 11 N -0.113 5.113 12 C -0.028 4.028 13 C 0.005 3.995 14 C -0.110 4.110 15 C -0.139 4.139 16 C -0.135 4.135 17 C -0.139 4.139 18 C -0.108 4.108 19 C -0.083 4.083 20 C 0.094 3.906 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.307 5.307 24 C -0.375 4.375 25 H 0.085 0.915 26 C -0.196 4.196 27 N -0.545 5.545 28 Si 0.729 3.271 29 H -0.214 1.214 30 H -0.218 1.218 31 H -0.211 1.211 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.190 0.810 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.033 0.967 49 H 0.052 0.948 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.522 2.222 -15.997 17.816 hybrid contribution -1.032 -2.056 0.946 2.488 sum 6.490 0.167 -15.050 16.391 Atomic orbital electron populations 1.21799 0.96344 1.01133 1.00217 1.20434 0.91952 0.94284 0.86685 0.95002 1.22631 0.86988 0.98771 0.99360 1.61859 1.10304 1.50527 1.01464 1.20384 0.89078 0.97055 0.93787 1.19994 0.96315 0.91617 1.13075 1.22292 0.85401 0.99282 1.02082 1.46094 1.07792 1.06405 1.58372 0.71854 1.77526 1.16270 0.93256 1.24237 1.20527 0.90029 0.93506 0.98771 1.17631 0.95119 0.89218 0.97526 1.21032 0.94636 0.97765 0.97537 1.20974 0.99845 0.92547 1.00500 1.21139 0.96799 0.98328 0.97263 1.21020 0.96480 0.97591 0.98770 1.21136 0.99438 0.91708 0.98554 1.22797 0.98456 0.94045 0.92998 1.20348 0.82834 0.95122 0.92272 0.89121 1.21899 0.96126 0.99519 1.01280 1.44230 1.03461 1.64916 1.18111 1.19129 0.93604 1.38726 0.86080 0.91495 1.25054 0.97458 1.00247 0.96850 1.69985 1.20011 1.46702 1.17775 0.86444 0.79751 0.79697 0.81252 1.21353 1.21819 1.21106 0.93093 0.91984 0.94355 0.92377 0.95778 0.90808 0.95051 0.80984 0.86100 0.86098 0.86342 0.86128 0.86127 0.96337 0.92581 0.91112 0.96722 0.94755 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.29 16 2 C 0.17 3.63 3.25 -67.49 -0.22 3.41 16 3 H 0.03 0.73 7.64 -51.93 -0.40 0.34 16 4 C 0.05 0.93 4.90 -3.70 -0.02 0.91 16 5 N -0.52 -9.08 4.06 -235.77 -0.96 -10.04 16 6 C 0.13 1.81 4.96 -4.97 -0.02 1.79 16 7 C -0.20 -2.81 4.78 -104.75 -0.50 -3.31 16 8 C 0.06 0.67 11.47 -17.26 -0.20 0.47 16 9 N -0.48 -5.55 7.35 30.42 0.22 -5.33 16 10 H 0.44 3.48 8.96 -182.61 -1.64 1.84 16 11 N -0.29 -4.31 12.74 33.42 0.43 -3.89 16 12 C 0.14 2.09 6.66 -82.78 -0.55 1.54 16 13 C 0.01 0.10 5.73 -104.90 -0.60 -0.50 16 14 C -0.09 -1.18 8.90 -39.25 -0.35 -1.53 16 15 C -0.12 -1.41 10.03 -39.63 -0.40 -1.81 16 16 C -0.12 -1.36 10.04 -39.52 -0.40 -1.75 16 17 C -0.12 -1.52 10.03 -39.63 -0.40 -1.92 16 18 C -0.09 -1.29 9.78 -39.26 -0.38 -1.67 16 19 C 0.05 0.91 4.85 -3.70 -0.02 0.89 16 20 C 0.20 4.75 2.35 -67.49 -0.16 4.59 16 21 H 0.09 2.45 6.16 -51.92 -0.32 2.13 16 22 C -0.13 -3.07 8.95 37.16 0.33 -2.73 16 23 N -0.58 -14.25 2.73 -157.00 -0.43 -14.68 16 24 C -0.25 -6.53 8.68 -15.06 -0.13 -6.66 16 25 H 0.07 1.75 6.21 -52.49 -0.33 1.42 16 26 C 0.00 0.06 5.01 -17.43 -0.09 -0.03 16 27 N -0.90 -25.46 9.65 55.49 0.54 -24.93 16 28 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 31 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 32 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 33 H 0.06 1.26 7.60 -51.93 -0.39 0.87 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.97 5.55 -51.93 -0.29 0.69 16 38 H 0.03 0.43 8.04 -51.93 -0.42 0.01 16 39 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.07 7.00 -51.93 -0.36 0.70 16 47 H 0.07 1.89 6.83 -51.93 -0.35 1.54 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.03 0.80 7.08 -51.93 -0.37 0.43 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -31.05 389.73 -12.10 -43.14 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.94 Total: 3.85 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.81 Total: -10.59 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.20 Total: -58.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.05 -12.10 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353604736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.839 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds