Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.62817 * 2 1 4 4 C 1.53239 * 109.62798 * 239.60760 * 2 1 3 5 5 N 1.46895 * 109.33810 * 186.46144 * 4 2 1 6 6 C 1.46903 * 110.99940 * 187.25881 * 5 4 2 7 7 C 1.50707 * 109.47166 * 163.83081 * 6 5 4 8 8 C 1.35084 * 126.07501 * 106.59076 * 7 6 5 9 9 N 1.35035 * 107.97876 * 180.25659 * 8 7 6 10 10 H 0.97004 * 125.93641 * 179.76144 * 9 8 7 11 11 N 1.40076 * 108.13686 * 359.73282 * 9 8 7 12 12 C 1.31615 * 108.11034 * 359.97438 * 11 9 8 13 13 C 1.48414 * 126.03953 * 180.02562 * 12 11 9 14 14 C 1.39328 * 120.12040 * 136.68701 * 13 12 11 15 15 C 1.38028 * 119.87862 * 179.72583 * 14 13 12 16 16 C 1.38321 * 120.11705 * 0.57282 * 15 14 13 17 17 C 1.38316 * 120.24299 * 359.69714 * 16 15 14 18 18 C 1.38022 * 120.11829 * 0.02562 * 17 16 15 19 19 C 1.46900 * 111.27200 * 63.10734 * 5 4 2 20 20 C 1.53235 * 109.33744 * 296.89381 * 19 5 4 21 21 H 1.09008 * 109.78955 * 173.63080 * 20 19 5 22 22 C 1.52996 * 109.63469 * 294.11586 * 20 19 5 23 23 N 1.47081 * 108.52464 * 53.82990 * 20 19 5 24 24 C 1.36937 * 120.88524 * 128.78780 * 23 20 19 25 25 H 1.07999 * 119.99924 * 208.87292 * 24 23 20 26 26 C 1.38815 * 119.99891 * 28.86811 * 24 23 20 27 27 N 1.31621 * 119.99834 * 13.36360 * 26 24 23 28 28 Si 1.86796 * 120.00105 * 193.35758 * 26 24 23 29 29 H 1.48499 * 109.47148 * 60.00299 * 28 26 24 30 30 H 1.48498 * 109.47167 * 180.02562 * 28 26 24 31 31 H 1.48499 * 109.47148 * 300.00289 * 28 26 24 32 32 H 1.08999 * 109.46792 * 180.39017 * 1 2 3 33 33 H 1.08997 * 109.47125 * 300.39005 * 1 2 3 34 34 H 1.08999 * 109.46982 * 60.39108 * 1 2 3 35 35 H 1.08996 * 109.48865 * 66.50611 * 4 2 1 36 36 H 1.08992 * 109.51664 * 306.43643 * 4 2 1 37 37 H 1.08993 * 109.47290 * 43.83157 * 6 5 4 38 38 H 1.09004 * 109.46638 * 283.82277 * 6 5 4 39 39 H 1.08003 * 126.01141 * 359.96048 * 8 7 6 40 40 H 1.08002 * 120.05828 * 359.97438 * 14 13 12 41 41 H 1.07997 * 119.93767 * 180.31440 * 15 14 13 42 42 H 1.07997 * 119.87553 * 179.72780 * 16 15 14 43 43 H 1.07994 * 119.94330 * 180.02562 * 17 16 15 44 44 H 1.08009 * 120.05931 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.48847 * 56.85219 * 19 5 4 46 46 H 1.09000 * 109.49473 * 176.93739 * 19 5 4 47 47 H 1.09000 * 109.47782 * 179.02535 * 22 20 19 48 48 H 1.09002 * 109.47123 * 299.03591 * 22 20 19 49 49 H 1.09003 * 109.46737 * 59.03214 * 22 20 19 50 50 H 0.97003 * 119.99998 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7302 -1.2450 5 7 3.5054 -0.8625 -1.1622 6 6 4.0568 -1.4021 -2.4123 7 6 5.5435 -1.1583 -2.4522 8 6 6.5071 -2.0895 -2.2821 9 7 7.7046 -1.4737 -2.3838 10 1 8.5724 -1.8989 -2.3003 11 7 7.4759 -0.1140 -2.6315 12 6 6.1750 0.0803 -2.6777 13 6 5.4938 1.3767 -2.9184 14 6 4.4008 1.4429 -3.7798 15 6 3.7675 2.6502 -3.9956 16 6 4.2235 3.7951 -3.3676 17 6 5.3117 3.7362 -2.5158 18 6 5.9488 2.5331 -2.2885 19 6 3.9016 -1.6871 -0.0129 20 6 3.4629 -0.9962 1.2826 21 1 3.6513 -1.6520 2.1327 22 6 4.2416 0.3091 1.4582 23 7 2.0241 -0.7048 1.1927 24 6 1.1671 -1.0802 2.1926 25 1 0.1348 -1.3009 1.9645 26 6 1.6252 -1.1772 3.4994 27 7 2.7921 -0.6642 3.8274 28 14 0.5856 -2.0354 4.7924 29 1 0.3562 -3.4455 4.3871 30 1 1.2932 -2.0038 6.0975 31 1 -0.7196 -1.3387 4.9205 32 1 -0.3633 -1.0276 0.0070 33 1 -0.3633 0.5199 0.8864 34 1 -0.3633 0.5077 -0.8935 35 1 1.7811 -0.1603 -2.1359 36 1 1.5924 -1.7203 -1.2995 37 1 3.5847 -0.9075 -3.2611 38 1 3.8630 -2.4736 -2.4622 39 1 6.3479 -3.1409 -2.0929 40 1 4.0472 0.5504 -4.2746 41 1 2.9170 2.7016 -4.6592 42 1 3.7278 4.7385 -3.5427 43 1 5.6634 4.6330 -2.0278 44 1 6.7982 2.4881 -1.6228 45 1 3.4233 -2.6640 -0.0841 46 1 4.9845 -1.8112 -0.0102 47 1 3.9153 0.8069 2.3713 48 1 5.3074 0.0902 1.5245 49 1 4.0569 0.9601 0.6036 50 1 3.1125 -0.7323 4.7405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353604736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = 120.003035 kcal Electronic energy + Delta-G solvation = -31134.630671 eV Core-core repulsion = 27356.473805 eV Total energy + Delta-G solvation = -3778.156866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17869 -39.91776 -39.60416 -36.44867 -34.23433 -33.74839 -33.16286 -31.85335 -31.36026 -30.46387 -29.51646 -27.45013 -27.19051 -25.64732 -24.37994 -23.63270 -23.10465 -22.32132 -21.49093 -20.50156 -20.25269 -18.58061 -17.91393 -17.54506 -17.10736 -16.27984 -16.16672 -15.95038 -15.67222 -15.60732 -15.51246 -15.20423 -14.79870 -14.66306 -14.41008 -14.20877 -13.88443 -13.81107 -13.47510 -13.38985 -13.26145 -12.95981 -12.81043 -12.72923 -12.55869 -12.23835 -12.19709 -12.15670 -12.00047 -11.92236 -11.78586 -11.56511 -11.48330 -11.16095 -10.97128 -10.69887 -10.39879 -9.70675 -9.60432 -9.18904 -8.96852 -8.42274 -7.71735 -5.17396 0.28825 0.63910 1.07418 1.49774 1.50597 1.56721 1.82660 2.04452 2.57964 3.05883 3.28340 3.43169 3.62735 3.70155 4.00564 4.12274 4.21542 4.24516 4.35161 4.38536 4.45539 4.47846 4.60288 4.65153 4.69689 4.71207 4.76273 4.81795 4.87145 4.90081 4.97658 5.00083 5.02886 5.09506 5.15524 5.22230 5.26235 5.33285 5.37377 5.48525 5.50725 5.63399 5.72082 5.73608 5.76714 5.78012 5.82993 6.04385 6.20546 6.39902 6.47961 6.50026 6.56848 6.74296 7.31155 8.02514 8.56687 9.32531 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003956 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.251022 B = 7076.501998 C = 7888.335841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.010 0.990 4 C 0.063 3.937 5 N -0.525 5.525 6 C 0.132 3.868 7 C -0.225 4.225 8 C 0.072 3.928 9 N -0.467 5.467 10 H 0.453 0.547 11 N -0.322 5.322 12 C 0.124 3.876 13 C -0.014 4.014 14 C -0.098 4.098 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.115 4.115 19 C 0.065 3.935 20 C 0.201 3.799 21 H 0.053 0.947 22 C -0.105 4.105 23 N -0.598 5.598 24 C -0.247 4.247 25 H 0.071 0.929 26 C -0.050 4.050 27 N -0.926 5.926 28 Si 0.956 3.044 29 H -0.282 1.282 30 H -0.300 1.300 31 H -0.280 1.280 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.207 0.793 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.015 0.985 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.017 0.983 49 H 0.032 0.968 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 0.479 -18.577 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.061 3.939 3 H 0.028 0.972 4 C -0.066 4.066 5 N -0.249 5.249 6 C 0.004 3.996 7 C -0.237 4.237 8 C -0.076 4.076 9 N -0.177 5.177 10 H 0.299 0.701 11 N -0.146 5.146 12 C -0.041 4.041 13 C -0.016 4.016 14 C -0.117 4.117 15 C -0.137 4.137 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.134 4.134 19 C -0.064 4.064 20 C 0.094 3.906 21 H 0.071 0.929 22 C -0.164 4.164 23 N -0.321 5.321 24 C -0.378 4.378 25 H 0.089 0.911 26 C -0.245 4.245 27 N -0.573 5.573 28 Si 0.786 3.214 29 H -0.208 1.208 30 H -0.227 1.227 31 H -0.206 1.206 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.224 0.776 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.124 0.876 45 H 0.033 0.967 46 H 0.081 0.919 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.051 0.949 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.418 1.446 -18.437 19.576 hybrid contribution -0.643 -1.758 1.640 2.489 sum 5.774 -0.313 -16.798 17.765 Atomic orbital electron populations 1.21699 0.94721 1.01147 1.00973 1.20624 0.93394 0.93182 0.86749 0.97248 1.22466 0.87086 0.98599 0.98494 1.61781 1.10236 1.50599 1.02274 1.20381 0.89176 0.97833 0.92171 1.20089 0.96626 0.91843 1.15121 1.22806 0.84742 1.00433 0.99667 1.46148 1.08790 1.05548 1.57205 0.70080 1.77469 1.16618 0.94992 1.25568 1.20753 0.90273 0.94165 0.98895 1.17864 0.96057 0.89203 0.98436 1.21238 0.94254 0.98906 0.97296 1.21363 1.00204 0.91929 1.00246 1.21505 0.96236 0.99665 0.96404 1.21277 0.96840 0.97482 0.99119 1.21198 0.99907 0.92873 0.99464 1.22403 0.98619 0.93380 0.91996 1.20198 0.82904 0.94275 0.93247 0.92929 1.21627 0.96216 0.99474 0.99133 1.44458 1.03485 1.65443 1.18754 1.19430 0.94045 1.37596 0.86684 0.91136 1.25711 0.98631 1.01520 0.98681 1.70171 1.21486 1.48245 1.17393 0.85509 0.78346 0.78842 0.78680 1.20843 1.22675 1.20599 0.93283 0.94251 0.90638 0.89436 0.95852 0.89311 0.93648 0.77603 0.84868 0.83214 0.83699 0.84728 0.87635 0.96728 0.91899 0.94721 0.96360 0.94924 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.95 71.98 0.57 -4.01 16 2 C 0.17 6.81 3.25 44.96 0.15 6.95 16 3 H 0.01 0.44 7.64 -2.39 -0.02 0.43 16 4 C 0.06 2.08 4.90 86.38 0.42 2.50 16 5 N -0.52 -17.38 4.06 -899.84 -3.65 -21.03 16 6 C 0.13 3.42 4.96 85.56 0.42 3.84 16 7 C -0.23 -5.92 4.78 -19.95 -0.10 -6.01 16 8 C 0.07 1.51 11.47 83.47 0.96 2.47 16 9 N -0.47 -10.09 7.35 -57.68 -0.42 -10.51 16 10 H 0.45 6.41 8.96 -213.33 -1.91 4.50 16 11 N -0.32 -9.47 12.74 -48.16 -0.61 -10.09 16 12 C 0.12 3.68 6.66 42.53 0.28 3.97 16 13 C -0.01 -0.40 5.73 -20.04 -0.11 -0.51 16 14 C -0.10 -2.36 8.90 22.48 0.20 -2.16 16 15 C -0.12 -2.47 10.03 22.24 0.22 -2.25 16 16 C -0.12 -2.53 10.04 22.31 0.22 -2.31 16 17 C -0.13 -3.19 10.03 22.24 0.22 -2.96 16 18 C -0.12 -3.39 9.78 22.48 0.22 -3.17 16 19 C 0.07 2.52 4.85 86.38 0.42 2.93 16 20 C 0.20 9.63 2.35 44.96 0.11 9.74 16 21 H 0.05 2.94 6.16 -2.38 -0.01 2.92 16 22 C -0.11 -5.15 8.95 71.98 0.64 -4.51 16 23 N -0.60 -29.34 2.73 -650.63 -1.77 -31.11 16 24 C -0.25 -13.24 8.68 84.03 0.73 -12.51 16 25 H 0.07 3.67 6.21 -2.91 -0.02 3.65 16 26 C -0.05 -2.78 5.01 84.86 0.43 -2.36 16 27 N -0.93 -54.28 9.65 21.65 0.21 -54.07 16 28 Si 0.96 45.12 29.57 68.60 2.03 47.15 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 31 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 32 H 0.05 1.77 7.52 -2.39 -0.02 1.75 16 33 H 0.04 1.56 7.60 -2.39 -0.02 1.55 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.41 7.93 -2.39 -0.02 2.39 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 2.02 5.55 -2.39 -0.01 2.01 16 38 H 0.05 1.07 8.04 -2.38 -0.02 1.05 16 39 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.13 2.77 6.29 -2.91 -0.02 2.75 16 41 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 44 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 2.32 7.00 -2.39 -0.02 2.30 16 47 H 0.03 1.91 6.83 -2.39 -0.02 1.90 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.03 1.56 7.08 -2.39 -0.02 1.54 16 50 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -69.61 389.73 0.82 -68.79 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.96 Total: 21.23 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.01 Total: -10.35 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -6.25 Total: -126.81 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.61 0.82 -68.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353604736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.790 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds