Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00033 * 2 1 4 4 C 1.53004 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46879 * 179.97438 * 4 3 2 6 6 C 1.36742 * 127.13832 * 91.41875 * 5 4 3 7 7 C 1.50704 * 126.34494 * 359.94737 * 6 5 4 8 8 C 1.52996 * 109.47030 * 89.99391 * 7 6 5 9 9 C 1.50701 * 109.47219 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00234 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99971 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47039 * 90.00738 * 13 11 9 15 15 H 1.48509 * 109.46696 * 210.00133 * 13 11 9 16 16 H 1.48493 * 109.47497 * 330.00047 * 13 11 9 17 17 N 1.30290 * 107.30417 * 179.97438 * 6 5 4 18 18 N 1.28520 * 110.05631 * 0.02562 * 17 6 5 19 19 C 1.31220 * 109.86229 * 359.74304 * 18 17 6 20 20 N 1.38580 * 126.47535 * 180.25959 * 19 18 17 21 21 C 1.46852 * 110.99546 * 299.07463 * 20 19 18 22 22 C 1.53042 * 109.52028 * 185.83983 * 21 20 19 23 23 C 1.53120 * 109.28013 * 300.82275 * 22 21 20 24 24 H 1.08993 * 109.52459 * 297.68790 * 23 22 21 25 25 C 1.52993 * 109.52397 * 177.55563 * 23 22 21 26 26 C 1.53122 * 109.15903 * 57.65600 * 23 22 21 27 27 H 1.08998 * 109.50240 * 182.40933 * 26 23 22 28 28 F 1.39901 * 109.50422 * 62.32526 * 26 23 22 29 29 C 1.46840 * 111.00437 * 63.28662 * 20 19 18 30 30 H 1.08997 * 109.46749 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47166 * 300.00063 * 1 2 3 32 32 H 1.08997 * 109.46807 * 60.00293 * 1 2 3 33 33 H 1.08997 * 109.46685 * 59.99720 * 3 2 1 34 34 H 1.08998 * 109.46480 * 299.99583 * 3 2 1 35 35 H 1.08997 * 109.47095 * 59.99990 * 4 3 2 36 36 H 1.09000 * 109.46766 * 299.99528 * 4 3 2 37 37 H 1.08999 * 109.46846 * 209.99526 * 7 6 5 38 38 H 1.09004 * 109.46940 * 329.99481 * 7 6 5 39 39 H 1.08999 * 109.47416 * 299.99786 * 8 7 6 40 40 H 1.09004 * 109.47186 * 60.00240 * 8 7 6 41 41 H 0.96997 * 119.99568 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.46903 * 305.85195 * 21 20 19 43 43 H 1.08994 * 109.46178 * 65.83163 * 21 20 19 44 44 H 1.09004 * 109.50290 * 60.76271 * 22 21 20 45 45 H 1.08996 * 109.50308 * 180.84211 * 22 21 20 46 46 H 1.09006 * 109.46697 * 60.00404 * 25 23 22 47 47 H 1.08998 * 109.47538 * 180.02562 * 25 23 22 48 48 H 1.09000 * 109.47474 * 300.00817 * 25 23 22 49 49 H 1.09001 * 109.46383 * 294.18075 * 29 20 19 50 50 H 1.09001 * 109.45911 * 54.14004 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.4914 3.2669 1.0894 7 6 4.3482 2.8623 2.5341 8 6 5.6167 2.1378 2.9888 9 6 5.4739 1.7338 4.4336 10 1 4.5687 1.9698 4.9734 11 6 6.4984 1.0619 5.0661 12 7 7.6004 0.7741 4.4087 13 14 6.3208 0.5605 6.8568 14 1 5.7179 -0.7944 6.9341 15 1 7.6588 0.5443 7.5012 16 1 5.4451 1.5328 7.5587 17 7 4.9805 4.3905 0.6470 18 7 4.9538 4.4073 -0.6378 19 6 4.4469 3.2837 -1.0879 20 7 4.2642 2.9364 -2.4170 21 6 3.3543 3.8752 -3.0858 22 6 3.0616 3.3809 -4.5043 23 6 4.3756 3.2721 -5.2830 24 1 4.8333 4.2579 -5.3646 25 6 4.0965 2.7205 -6.6824 26 6 5.3233 2.3265 -4.5399 27 1 6.2762 2.2782 -5.0668 28 9 4.7568 1.0486 -4.4811 29 6 5.5503 2.8513 -3.1204 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 4.1978 3.7510 3.1470 38 1 3.4914 2.1972 2.6419 39 1 5.7672 1.2491 2.3759 40 1 6.4735 2.8029 2.8810 41 1 8.3213 0.3017 4.8539 42 1 2.4222 3.9400 -2.5244 43 1 3.8189 4.8600 -3.1331 44 1 2.5844 2.4020 -4.4574 45 1 2.3981 4.0855 -5.0056 46 1 3.4173 3.3914 -7.2086 47 1 5.0323 2.6430 -7.2358 48 1 3.6408 1.7338 -6.5999 49 1 6.0048 3.8410 -3.1675 50 1 6.2134 2.1726 -2.5839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355380821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -25.140357 kcal Electronic energy + Delta-G solvation = -31089.466616 eV Core-core repulsion = 26874.246635 eV Total energy + Delta-G solvation = -4215.219980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.72910 -42.71485 -38.92073 -38.12403 -35.10023 -35.01389 -33.81070 -31.75039 -30.94366 -29.85792 -29.24504 -27.50295 -26.44857 -25.25988 -23.69820 -23.50095 -23.11907 -21.85397 -20.94214 -20.07897 -19.64027 -17.66335 -16.92480 -16.58788 -16.25721 -16.11682 -15.93924 -15.70300 -15.62095 -15.25812 -14.80744 -14.58554 -14.46426 -14.32112 -13.82805 -13.43240 -13.35360 -13.06180 -12.99282 -12.90470 -12.45542 -12.39155 -12.23704 -12.09750 -11.64859 -11.57230 -11.54059 -11.34502 -11.21874 -11.16492 -10.99716 -10.69867 -10.67615 -10.52772 -10.43355 -10.04561 -9.94139 -9.85089 -9.77202 -9.23906 -8.85319 -8.50101 -8.41115 -6.05437 -4.09667 1.95287 2.29855 3.16497 3.30061 3.36747 3.37183 3.39847 3.93913 4.12953 4.17800 4.37927 4.41306 4.48893 4.70573 4.77265 4.83349 4.90951 5.00729 5.03133 5.10590 5.14249 5.17883 5.20720 5.21629 5.26971 5.30835 5.33831 5.40903 5.47899 5.49032 5.53248 5.56187 5.60609 5.66590 5.71631 5.76747 5.84748 6.07042 6.27469 6.30070 6.41062 6.55253 6.63005 6.87257 6.91375 7.37621 7.54312 7.66674 7.91329 8.28522 8.96017 9.06389 9.55048 11.05706 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.002998 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.349581 B = 9338.785886 C =10264.398865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.056 3.944 4 C 0.114 3.886 5 N -0.460 5.460 6 C 0.222 3.778 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 N -0.296 5.296 18 N -0.310 5.310 19 C 0.321 3.679 20 N -0.454 5.454 21 C 0.066 3.934 22 C -0.111 4.111 23 C -0.121 4.121 24 H 0.088 0.912 25 C -0.147 4.147 26 C 0.105 3.895 27 H 0.091 0.909 28 F -0.200 7.200 29 C 0.039 3.961 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.015 0.985 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 2.041 -21.075 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.022 4.022 4 C -0.010 4.010 5 N -0.154 5.154 6 C -0.045 4.045 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.135 5.135 18 N -0.153 5.153 19 C -0.035 4.035 20 N -0.180 5.180 21 C -0.061 4.061 22 C -0.149 4.149 23 C -0.140 4.140 24 H 0.106 0.894 25 C -0.204 4.204 26 C 0.068 3.932 27 H 0.109 0.891 28 F -0.181 7.181 29 C -0.089 4.089 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.494 2.664 -21.082 24.159 hybrid contribution -0.400 -0.779 0.957 1.297 sum -11.894 1.885 -20.125 23.453 Atomic orbital electron populations 1.22755 0.80442 1.02964 1.00053 1.87834 1.20104 1.26711 1.95474 1.22672 0.93100 0.85435 1.01004 1.21545 0.91849 0.80702 1.06867 1.46166 1.46975 1.16035 1.06193 1.25718 0.97667 0.88548 0.92562 1.20509 1.02654 1.01778 0.82431 1.19074 0.90490 0.94856 0.96200 1.21116 1.02073 1.37106 0.95959 0.92288 1.25006 0.95182 0.95796 0.98231 1.69969 1.05836 1.40457 1.36742 0.86556 0.77459 0.78926 0.84850 1.20618 1.21176 1.19746 1.74074 1.19378 1.18104 1.01976 1.74494 1.18638 1.17647 1.04566 1.22055 1.04163 0.89642 0.87686 1.58392 1.13538 1.50096 0.95980 1.22161 0.95949 0.93473 0.94487 1.21664 0.96843 1.02974 0.93442 1.21811 0.96748 0.99603 0.95845 0.89402 1.21784 1.01957 1.01764 0.94936 1.21626 0.96718 0.79418 0.95465 0.89088 1.92823 1.87065 1.40802 1.97431 1.22764 0.89798 1.02548 0.93780 0.89282 0.93832 0.94113 0.92608 0.92756 0.87482 0.86977 0.89109 0.91103 0.96660 0.95585 0.92841 0.90486 0.92692 0.90258 0.90429 0.92139 0.92422 0.91829 0.91141 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.96 10.70 -35.23 -0.38 -5.34 16 3 C 0.06 0.71 6.26 37.16 0.23 0.94 16 4 C 0.11 1.67 6.27 -4.04 -0.03 1.65 16 5 N -0.46 -7.81 2.81 -114.08 -0.32 -8.13 16 6 C 0.22 4.36 7.32 -154.01 -1.13 3.23 16 7 C -0.03 -0.68 5.35 -27.88 -0.15 -0.83 16 8 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 9 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 17 N -0.30 -6.27 12.18 32.99 0.40 -5.87 16 18 N -0.31 -5.95 12.19 30.31 0.37 -5.58 16 19 C 0.32 5.29 6.41 -318.87 -2.05 3.25 16 20 N -0.45 -5.92 4.61 -174.55 -0.80 -6.72 16 21 C 0.07 0.71 5.37 -3.83 -0.02 0.69 16 22 C -0.11 -0.90 5.25 -26.65 -0.14 -1.04 16 23 C -0.12 -0.90 2.65 -90.50 -0.24 -1.14 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.15 -0.94 9.06 37.15 0.34 -0.60 16 26 C 0.10 0.96 3.60 -26.65 -0.10 0.86 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 F -0.20 -2.36 16.01 2.25 0.04 -2.33 16 29 C 0.04 0.45 5.14 -3.84 -0.02 0.44 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.11 1.77 7.80 -51.93 -0.41 1.37 16 37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.07 1.30 7.88 -51.93 -0.41 0.89 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.47 7.74 -51.93 -0.40 0.06 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 409.73 15.07 6.17 6.17 Total: -1.00 -32.76 409.73 -10.31 -43.07 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.77 Total: -2.24 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.73 Total: -3.50 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.38 Total: -52.08 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.76 -10.31 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355380821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.927 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds