Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99655 * 2 1 4 4 C 1.52996 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47306 * 79.91260 * 4 3 2 6 6 C 1.46901 * 110.99762 * 281.12714 * 5 4 3 7 7 C 1.50705 * 109.47330 * 77.67670 * 6 5 4 8 8 H 1.08001 * 119.99913 * 243.96716 * 7 6 5 9 9 C 1.37878 * 120.00006 * 63.96795 * 7 6 5 10 10 N 1.31522 * 119.99837 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00160 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46688 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47057 * 119.99751 * 11 9 7 14 14 H 1.48493 * 109.47281 * 240.00122 * 11 9 7 15 15 C 1.38575 * 111.00336 * 157.17683 * 5 4 3 16 16 N 1.31219 * 126.47004 * 11.83640 * 15 5 4 17 17 N 1.28532 * 109.85794 * 179.82687 * 16 15 5 18 18 C 1.30297 * 110.05483 * 0.45316 * 17 16 15 19 19 C 1.50694 * 126.34922 * 179.76278 * 18 17 16 20 20 N 1.36451 * 126.47216 * 192.15376 * 15 5 4 21 21 C 1.46501 * 127.14086 * 359.97438 * 20 15 5 22 22 C 1.53004 * 109.47125 * 91.46223 * 21 20 15 23 23 H 1.09001 * 110.43362 * 307.54248 * 22 21 20 24 24 C 1.54887 * 110.48782 * 70.22543 * 22 21 20 25 25 C 1.54887 * 102.74896 * 156.62160 * 24 22 21 26 26 C 1.54268 * 104.19318 * 322.05908 * 25 24 22 27 27 H 1.09001 * 110.02974 * 142.89384 * 26 25 24 28 28 F 1.39902 * 110.03151 * 264.32218 * 26 25 24 29 29 C 1.53871 * 106.60111 * 23.60972 * 26 25 24 30 30 H 1.08994 * 109.47243 * 60.00418 * 1 2 3 31 31 H 1.09012 * 109.46588 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47409 * 300.00126 * 1 2 3 33 33 H 1.09004 * 109.47392 * 59.99610 * 3 2 1 34 34 H 1.09006 * 109.47142 * 299.99600 * 3 2 1 35 35 H 1.09003 * 109.46811 * 319.91096 * 4 3 2 36 36 H 1.09004 * 109.47344 * 199.91153 * 4 3 2 37 37 H 1.08997 * 109.47488 * 317.67377 * 6 5 4 38 38 H 1.09003 * 109.47458 * 197.67825 * 6 5 4 39 39 H 0.97000 * 119.99474 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.47021 * 269.95845 * 19 18 17 41 41 H 1.08999 * 109.47052 * 29.96119 * 19 18 17 42 42 H 1.08998 * 109.47238 * 149.95779 * 19 18 17 43 43 H 1.08997 * 109.47154 * 211.46348 * 21 20 15 44 44 H 1.08995 * 109.46930 * 331.46370 * 21 20 15 45 45 H 1.09000 * 110.75466 * 274.93729 * 24 22 21 46 46 H 1.08998 * 110.75591 * 38.30681 * 24 22 21 47 47 H 1.08995 * 110.48629 * 203.38350 * 25 24 22 48 48 H 1.08999 * 110.48707 * 80.73633 * 25 24 22 49 49 H 1.09001 * 110.03325 * 240.71584 * 29 26 25 50 50 H 1.09002 * 110.03310 * 119.28068 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 7 4.0049 0.9042 -1.3626 6 6 3.8187 -0.5129 -1.7022 7 6 2.3710 -0.7629 -2.0384 8 1 1.7790 -1.4211 -1.4198 9 6 1.8025 -0.1513 -3.1355 10 7 2.5237 0.6499 -3.8890 11 14 0.0079 -0.4606 -3.5517 12 1 -0.5777 -1.3930 -2.5553 13 1 -0.7355 0.8246 -3.5229 14 1 -0.0898 -1.0587 -4.9074 15 6 5.3287 1.2826 -1.5197 16 7 6.1627 1.6181 -0.5639 17 7 7.3094 1.9083 -1.0668 18 6 7.2726 1.7855 -2.3635 19 6 8.4111 2.0395 -3.3174 20 7 6.0094 1.3825 -2.6981 21 6 5.4941 1.1134 -4.0429 22 6 4.9390 2.4060 -4.6445 23 1 4.2251 2.8674 -3.9621 24 6 6.0901 3.3883 -4.9748 25 6 5.4663 4.2906 -6.0683 26 6 4.6126 3.3238 -6.9148 27 1 3.6954 3.8182 -7.2348 28 9 5.3398 2.8934 -8.0298 29 6 4.2774 2.1256 -6.0095 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6884 1.8465 0.8900 34 1 1.6885 1.8464 -0.8901 35 1 3.8352 0.3725 0.6627 36 1 3.9737 2.1195 0.3507 37 1 4.1063 -1.1312 -0.8519 38 1 4.4400 -0.7653 -2.5615 39 1 2.1235 1.0805 -4.6606 40 1 8.3950 3.0828 -3.6327 41 1 9.3569 1.8250 -2.8198 42 1 8.3051 1.3946 -4.1897 43 1 6.3003 0.7366 -4.6722 44 1 4.6999 0.3691 -3.9853 45 1 6.3606 3.9755 -4.0973 46 1 6.9557 2.8521 -5.3639 47 1 6.2465 4.7449 -6.6788 48 1 4.8382 5.0585 -5.6167 49 1 4.6812 1.2087 -6.4388 50 1 3.1974 2.0385 -5.8901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381889494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -1.806340 kcal Electronic energy + Delta-G solvation = -32955.577999 eV Core-core repulsion = 28741.369857 eV Total energy + Delta-G solvation = -4214.208141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.44602 -42.14062 -37.70171 -37.64357 -35.82294 -33.95802 -32.58984 -31.34393 -29.57006 -28.86182 -28.25920 -27.66540 -25.86996 -25.32471 -24.62806 -22.55378 -21.82526 -20.70485 -20.12053 -19.70071 -19.36656 -16.88235 -16.67494 -16.19485 -15.81636 -15.62354 -15.26651 -15.15644 -14.93792 -14.52387 -14.30213 -14.21726 -13.83636 -13.51834 -13.46702 -13.12413 -13.01795 -12.79007 -12.56813 -12.44691 -12.07167 -11.89468 -11.42447 -11.38976 -11.26888 -11.14872 -10.96354 -10.88912 -10.75057 -10.70671 -10.67637 -10.50039 -10.31696 -10.24863 -10.04513 -9.81123 -9.54668 -9.34991 -9.21136 -8.78058 -8.51137 -8.37188 -7.07472 -6.09446 -4.03542 2.62475 3.11543 3.20362 3.28828 3.31986 3.63483 4.34332 4.54053 4.61370 4.68551 4.72124 4.82032 4.96344 5.03365 5.32168 5.33208 5.42335 5.51455 5.59296 5.60133 5.68349 5.72365 5.78558 5.82509 5.90408 5.91684 5.96150 6.00746 6.06583 6.13485 6.17537 6.17782 6.23258 6.28025 6.38032 6.41712 6.43514 6.57366 6.59783 6.76969 6.85483 6.87463 7.03733 7.13085 7.54491 7.90240 7.99731 8.04852 8.10920 8.54688 8.97573 9.54488 9.60438 10.96796 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.005561 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.585017 B = 5033.501673 C = 7078.151987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.344 6.344 3 C 0.080 3.920 4 C 0.084 3.916 5 N -0.423 5.423 6 C 0.193 3.807 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.076 3.924 10 N -0.870 5.870 11 Si 0.878 3.122 12 H -0.272 1.272 13 H -0.288 1.288 14 H -0.291 1.291 15 C 0.388 3.612 16 N -0.365 5.365 17 N -0.297 5.297 18 C 0.141 3.859 19 C -0.056 4.056 20 N -0.465 5.465 21 C 0.111 3.889 22 C -0.072 4.072 23 H 0.093 0.907 24 C -0.129 4.129 25 C -0.146 4.146 26 C 0.081 3.919 27 H 0.080 0.920 28 F -0.219 7.219 29 C -0.127 4.127 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.001 0.999 38 H 0.030 0.970 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.152 0.848 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 4.785 -3.976 6.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.262 6.262 3 C 0.003 3.997 4 C -0.043 4.043 5 N -0.147 5.147 6 C 0.071 3.929 7 C -0.503 4.503 8 H 0.092 0.908 9 C -0.126 4.126 10 N -0.510 5.510 11 Si 0.708 3.292 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.032 3.968 16 N -0.211 5.211 17 N -0.138 5.138 18 C -0.127 4.127 19 C -0.115 4.115 20 N -0.159 5.159 21 C -0.011 4.011 22 C -0.091 4.091 23 H 0.111 0.889 24 C -0.166 4.166 25 C -0.184 4.184 26 C 0.045 3.955 27 H 0.098 0.902 28 F -0.200 7.200 29 C -0.166 4.166 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.019 0.981 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.169 0.831 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.049 5.215 -3.115 6.796 hybrid contribution -1.467 -0.299 -1.305 1.986 sum 1.582 4.916 -4.420 6.797 Atomic orbital electron populations 1.22499 0.84321 1.01262 0.98075 1.88410 1.16817 1.26356 1.94637 1.22239 0.93095 0.85836 0.98552 1.21812 0.93661 1.01057 0.87807 1.59635 1.06126 1.24709 1.24266 1.20033 0.98692 0.79728 0.94435 1.21117 0.94746 1.26203 1.08231 0.90841 1.24815 0.96859 0.94861 0.96082 1.69852 1.35004 1.29821 1.16324 0.86832 0.86571 0.77867 0.77966 1.19614 1.21508 1.21735 1.23292 0.92000 0.99400 0.82157 1.74562 0.96907 1.25141 1.24508 1.73742 1.15906 1.19065 1.05080 1.24366 0.87266 1.06704 0.94404 1.20094 0.93342 1.02255 0.95812 1.46076 1.09988 1.51500 1.08327 1.22361 1.00389 1.00353 0.78036 1.21945 0.96137 0.94610 0.96408 0.88879 1.22816 0.98444 0.97646 0.97737 1.22924 0.99644 0.97975 0.97881 1.22335 0.93596 0.96291 0.83308 0.90188 1.92787 1.80186 1.91524 1.55483 1.22631 1.03390 0.96592 0.93978 0.95203 0.90892 0.96014 0.95359 0.92332 0.93534 0.90391 0.98061 0.95200 0.93418 0.90546 0.89844 0.91195 0.91846 0.83065 0.91629 0.91418 0.90855 0.90335 0.90731 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.16 101.05 1.03 1.64 16 2 O -0.34 -6.94 6.41 -35.23 -0.23 -7.17 16 3 C 0.08 1.53 5.63 37.16 0.21 1.74 16 4 C 0.08 1.72 5.05 -3.83 -0.02 1.70 16 5 N -0.42 -9.20 3.97 -175.88 -0.70 -9.90 16 6 C 0.19 4.44 4.45 -4.97 -0.02 4.42 16 7 C -0.46 -10.87 5.85 -34.44 -0.20 -11.07 16 8 H 0.07 1.80 6.28 -52.49 -0.33 1.47 16 9 C 0.08 1.76 5.41 -17.82 -0.10 1.66 16 10 N -0.87 -19.34 9.41 55.43 0.52 -18.82 16 11 Si 0.88 18.86 27.12 -169.99 -4.61 14.25 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.39 8.40 6.86 -318.88 -2.19 6.21 16 16 N -0.36 -8.24 11.07 30.31 0.34 -7.90 16 17 N -0.30 -6.32 12.18 32.99 0.40 -5.91 16 18 C 0.14 2.56 7.69 -154.01 -1.18 1.38 16 19 C -0.06 -0.72 8.78 36.00 0.32 -0.40 16 20 N -0.46 -8.90 2.72 -114.09 -0.31 -9.21 16 21 C 0.11 1.92 4.89 -4.04 -0.02 1.90 16 22 C -0.07 -1.13 2.41 -88.96 -0.21 -1.34 16 23 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 24 C -0.13 -1.72 4.61 -24.74 -0.11 -1.83 16 25 C -0.15 -1.75 6.62 -25.07 -0.17 -1.91 16 26 C 0.08 1.05 4.68 -25.61 -0.12 0.93 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 F -0.22 -3.17 17.05 2.25 0.04 -3.13 16 29 C -0.13 -1.87 5.84 -25.62 -0.15 -2.02 16 30 H 0.03 0.54 6.19 -51.93 -0.32 0.22 16 31 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.05 0.98 7.64 -51.93 -0.40 0.58 16 36 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 37 H 0.00 0.03 7.65 -51.93 -0.40 -0.37 16 38 H 0.03 0.72 5.87 -51.93 -0.30 0.41 16 39 H 0.25 5.50 6.52 -40.82 -0.27 5.24 16 40 H 0.08 0.88 7.11 -51.93 -0.37 0.51 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 43 H 0.06 0.98 7.17 -51.93 -0.37 0.61 16 44 H 0.15 3.09 3.76 -51.93 -0.20 2.89 16 45 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 46 H 0.07 0.85 6.86 -51.93 -0.36 0.49 16 47 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.07 1.13 7.71 -51.93 -0.40 0.72 16 50 H 0.09 1.48 6.22 -51.93 -0.32 1.15 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -25.99 374.78 -9.64 -35.63 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.79 Total: 3.52 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.94 Total: 3.00 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.25 Total: -51.74 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.23 Total: -7.17 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.61 Total: 14.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -25.99 -9.64 -35.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381889494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.819 kcal (2) G-P(sol) polarization free energy of solvation -25.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds