Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47006 * 2 1 4 4 N 1.30294 * 126.34614 * 89.97060 * 3 2 1 5 5 N 1.28527 * 110.05672 * 180.02562 * 4 3 2 6 6 C 1.31224 * 109.85585 * 359.97438 * 5 4 3 7 7 N 1.38584 * 126.47089 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99915 * 113.60638 * 7 6 5 9 9 C 1.50697 * 109.46944 * 306.66846 * 8 7 6 10 10 H 1.07992 * 120.00196 * 4.82862 * 9 8 7 11 11 C 1.37883 * 119.99929 * 184.83429 * 9 8 7 12 12 N 1.31517 * 119.99960 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00247 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46798 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47124 * 119.99630 * 13 11 9 16 16 H 1.48492 * 109.47230 * 240.00044 * 13 11 9 17 17 C 1.46894 * 110.99956 * 349.64925 * 7 6 5 18 18 C 1.53005 * 109.47010 * 195.82638 * 17 7 6 19 19 C 1.52995 * 117.49686 * 242.69708 * 18 17 7 20 20 C 1.53003 * 117.49968 * 174.03332 * 18 17 7 21 21 N 1.36454 * 107.05155 * 0.22812 * 6 5 4 22 22 C 1.46501 * 127.13278 * 179.77059 * 21 6 5 23 23 C 1.52993 * 109.47199 * 96.31937 * 22 21 6 24 24 H 1.08993 * 109.47757 * 305.19144 * 23 22 21 25 25 F 1.39905 * 109.46740 * 65.18883 * 23 22 21 26 26 C 1.53006 * 109.47428 * 185.18333 * 23 22 21 27 27 O 1.42900 * 109.46709 * 55.00251 * 26 23 22 28 28 C 1.42898 * 114.00143 * 180.02562 * 27 26 23 29 29 H 1.08999 * 109.46706 * 60.00645 * 1 2 3 30 30 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47017 * 300.00350 * 1 2 3 32 32 H 1.08997 * 109.47017 * 239.99650 * 2 1 3 33 33 H 1.09001 * 109.46353 * 120.00036 * 2 1 3 34 34 H 1.09005 * 109.47175 * 66.66999 * 8 7 6 35 35 H 1.09000 * 109.47104 * 186.66614 * 8 7 6 36 36 H 0.96999 * 119.99937 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47682 * 315.82194 * 17 7 6 38 38 H 1.08997 * 109.47496 * 75.83027 * 17 7 6 39 39 H 1.08998 * 115.54604 * 28.36323 * 18 17 7 40 40 H 1.08999 * 117.50637 * 359.97438 * 19 18 17 41 41 H 1.09003 * 117.49833 * 145.02702 * 19 18 17 42 42 H 1.09000 * 117.50035 * 214.98053 * 20 18 17 43 43 H 1.09001 * 117.49557 * 359.97438 * 20 18 17 44 44 H 1.09009 * 109.47090 * 216.32311 * 22 21 6 45 45 H 1.09003 * 109.47273 * 336.32081 * 22 21 6 46 46 H 1.08998 * 109.47148 * 174.99869 * 26 23 22 47 47 H 1.08998 * 109.47046 * 295.00666 * 26 23 22 48 48 H 1.09002 * 109.46787 * 300.00249 * 28 27 26 49 49 H 1.08998 * 109.47122 * 59.99978 * 28 27 26 50 50 H 1.08998 * 109.47251 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1490 1.0495 5 7 2.7001 3.3123 0.6889 6 6 2.7281 3.3890 -0.6207 7 7 3.1154 4.4861 -1.3736 8 6 4.3488 4.2037 -2.1198 9 6 5.4085 3.7084 -1.1695 10 1 5.1658 3.5388 -0.1310 11 6 6.6879 3.4721 -1.6261 12 7 6.9833 3.6783 -2.8910 13 14 8.0016 2.8589 -0.4482 14 1 7.4182 2.7088 0.9092 15 1 8.5119 1.5452 -0.9162 16 1 9.1190 3.8357 -0.4009 17 6 3.2730 5.6763 -0.5271 18 6 3.3083 6.9272 -1.4074 19 6 4.5892 7.7638 -1.3950 20 6 3.3269 8.2858 -0.7040 21 7 2.2984 2.1863 -1.1013 22 6 2.1544 1.7955 -2.5058 23 6 3.4041 1.0353 -2.9544 24 1 4.2883 1.6415 -2.7577 25 9 3.4968 -0.1681 -2.2469 26 6 3.3111 0.7401 -4.4528 27 8 3.0994 1.9599 -5.1664 28 6 2.9969 1.7949 -6.5821 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.1512 3.4410 -2.8731 35 1 4.6952 5.1149 -2.6074 36 1 7.8834 3.5124 -3.2121 37 1 2.4342 5.7432 0.1657 38 1 4.2037 5.6015 0.0353 39 1 2.7633 6.8551 -2.3486 40 1 5.4067 7.4233 -0.7595 41 1 4.8866 8.2426 -2.3280 42 1 2.7945 9.1077 -1.1826 43 1 3.3136 8.2884 0.3860 44 1 1.2797 1.1545 -2.6168 45 1 2.0315 2.6874 -3.1204 46 1 4.2388 0.2780 -4.7903 47 1 2.4785 0.0615 -4.6384 48 1 3.9179 1.3544 -6.9641 49 1 2.1577 1.1383 -6.8115 50 1 2.8375 2.7661 -7.0505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454815245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = 13.243425 kcal Electronic energy + Delta-G solvation = -32545.773371 eV Core-core repulsion = 28332.217836 eV Total energy + Delta-G solvation = -4213.555535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.59982 -42.20706 -38.00184 -37.82027 -35.64212 -34.92723 -33.34479 -32.53591 -30.99705 -28.48231 -27.48533 -27.04051 -25.72846 -25.22204 -23.81645 -22.53126 -21.85700 -21.84565 -20.64216 -19.71982 -19.34026 -17.17801 -16.99229 -16.68003 -16.11546 -15.76523 -15.61938 -15.32819 -15.15960 -14.97659 -14.46956 -14.31818 -14.10321 -13.88900 -13.73769 -13.56433 -12.99708 -12.82598 -12.59266 -12.35826 -12.29825 -11.84885 -11.62305 -11.53865 -11.35385 -11.33529 -11.19529 -11.04469 -11.02174 -10.85659 -10.75263 -10.61931 -10.35324 -10.21541 -9.97373 -9.84134 -9.73983 -9.56710 -9.37720 -9.25102 -8.74195 -8.53744 -7.32303 -6.15916 -4.23137 2.48957 2.90841 3.22881 3.31817 3.41773 3.53778 3.65582 4.25847 4.36230 4.48727 4.63831 4.74000 4.78112 4.90281 5.04446 5.16025 5.17758 5.27944 5.30351 5.32696 5.34698 5.41840 5.44342 5.52319 5.54485 5.65056 5.67397 5.78529 5.82764 5.86714 5.95295 6.00016 6.04783 6.14934 6.22739 6.27606 6.38060 6.45508 6.56185 6.63871 6.73626 6.91567 7.06131 7.09275 7.32727 7.35642 7.65007 7.79937 8.03007 8.20983 8.87024 9.44608 9.57520 10.89350 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.007561 B = 0.005544 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3702.087106 B = 5049.039419 C = 5652.381992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.162 3.838 4 N -0.290 5.290 5 N -0.342 5.342 6 C 0.416 3.584 7 N -0.466 5.466 8 C 0.186 3.814 9 C -0.552 4.552 10 H 0.066 0.934 11 C 0.073 3.927 12 N -0.885 5.885 13 Si 0.883 3.117 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.109 3.891 18 C -0.135 4.135 19 C -0.171 4.171 20 C -0.186 4.186 21 N -0.476 5.476 22 C 0.100 3.900 23 C 0.068 3.932 24 H 0.130 0.870 25 F -0.201 7.201 26 C 0.047 3.953 27 O -0.374 6.374 28 C 0.035 3.965 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.039 0.961 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 -3.927 -6.142 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.106 4.106 4 N -0.128 5.128 5 N -0.186 5.186 6 C 0.060 3.940 7 N -0.189 5.189 8 C 0.062 3.938 9 C -0.591 4.591 10 H 0.084 0.916 11 C -0.131 4.131 12 N -0.523 5.523 13 Si 0.711 3.289 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.207 1.207 17 C -0.019 4.019 18 C -0.154 4.154 19 C -0.208 4.208 20 C -0.223 4.223 21 N -0.172 5.172 22 C -0.025 4.025 23 C 0.031 3.969 24 H 0.147 0.853 25 F -0.181 7.181 26 C -0.032 4.032 27 O -0.293 6.293 28 C -0.062 4.062 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.143 0.857 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.837 -3.243 -5.068 12.395 hybrid contribution 1.534 -1.193 -0.657 2.052 sum -9.303 -4.437 -5.725 11.790 Atomic orbital electron populations 1.21737 0.94525 1.01708 1.02248 1.19966 0.95669 0.87319 1.04629 1.24364 1.06677 0.96967 0.82559 1.73791 1.15681 0.99068 1.24280 1.74594 1.23298 1.13311 1.07355 1.22515 0.96946 0.85472 0.89089 1.59256 1.35959 0.99514 1.24158 1.20152 0.82023 0.98754 0.92839 1.21825 0.95356 1.45339 0.96540 0.91623 1.24853 0.98239 0.95007 0.94995 1.69951 1.20501 1.48117 1.13715 0.86647 0.81835 0.78544 0.81921 1.19498 1.20951 1.20745 1.21409 1.02133 0.85540 0.92787 1.22159 1.01526 0.90732 1.00953 1.22991 0.91931 1.03679 1.02203 1.22943 1.02681 0.97090 0.99614 1.45852 1.51943 1.12094 1.07274 1.22261 0.97593 1.02568 0.80032 1.22108 1.02500 0.82867 0.89438 0.85258 1.92769 1.97574 1.48198 1.79605 1.22860 1.01354 0.87730 0.91215 1.87922 1.93576 1.29128 1.18624 1.22752 0.99796 1.02658 0.80961 0.93119 0.91932 0.92050 0.89497 0.89016 0.94371 0.92657 0.92812 0.91104 0.91663 0.87678 0.88516 0.89384 0.89407 0.89162 0.89037 0.85738 0.91533 0.92452 0.93864 0.94276 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 37.16 0.37 -1.28 16 2 C -0.04 -0.51 6.20 -27.88 -0.17 -0.69 16 3 C 0.16 3.10 7.10 -154.03 -1.09 2.01 16 4 N -0.29 -6.48 12.18 32.99 0.40 -6.08 16 5 N -0.34 -8.09 10.93 30.32 0.33 -7.76 16 6 C 0.42 9.15 5.50 -318.86 -1.75 7.40 16 7 N -0.47 -9.92 4.66 -175.88 -0.82 -10.73 16 8 C 0.19 4.41 4.79 -4.98 -0.02 4.38 16 9 C -0.55 -14.67 7.37 -34.44 -0.25 -14.92 16 10 H 0.07 1.90 6.68 -52.49 -0.35 1.55 16 11 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 12 N -0.88 -24.23 13.29 55.43 0.74 -23.49 16 13 Si 0.88 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.11 2.18 4.65 -3.82 -0.02 2.17 16 18 C -0.13 -2.32 4.98 -90.62 -0.45 -2.77 16 19 C -0.17 -2.83 10.18 -26.69 -0.27 -3.10 16 20 C -0.19 -2.68 10.26 -26.69 -0.27 -2.96 16 21 N -0.48 -9.19 2.80 -114.08 -0.32 -9.51 16 22 C 0.10 1.58 4.68 -4.04 -0.02 1.57 16 23 C 0.07 1.13 3.62 -26.73 -0.10 1.03 16 24 H 0.13 2.77 6.02 -51.93 -0.31 2.46 16 25 F -0.20 -3.39 14.63 2.25 0.03 -3.35 16 26 C 0.05 0.63 5.89 37.16 0.22 0.84 16 27 O -0.37 -5.38 9.73 -35.23 -0.34 -5.72 16 28 C 0.03 0.36 11.01 101.05 1.11 1.47 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.18 5.72 -51.93 -0.30 0.88 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.92 4.77 -51.93 -0.25 0.68 16 35 H 0.06 1.40 7.26 -51.93 -0.38 1.02 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 38 H 0.07 1.48 6.81 -51.93 -0.35 1.12 16 39 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.10 1.74 8.03 -51.93 -0.42 1.33 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.17 8.09 -51.92 -0.42 0.75 16 45 H 0.12 2.03 7.07 -51.93 -0.37 1.66 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -31.13 402.94 -9.93 -41.05 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.17 Total: 5.79 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.83 Total: -2.98 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.33 Total: -57.58 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.34 Total: -5.72 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.03 Total: -3.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.13 -9.93 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454815245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.296 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds