Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47006 * 2 1 4 4 N 1.30294 * 126.34614 * 89.97060 * 3 2 1 5 5 N 1.28527 * 110.05672 * 180.02562 * 4 3 2 6 6 C 1.31224 * 109.85585 * 359.97438 * 5 4 3 7 7 N 1.38584 * 126.47089 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99915 * 113.60638 * 7 6 5 9 9 C 1.50697 * 109.46944 * 306.66846 * 8 7 6 10 10 H 1.07992 * 120.00196 * 4.82862 * 9 8 7 11 11 C 1.37883 * 119.99929 * 184.83429 * 9 8 7 12 12 N 1.31517 * 119.99960 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00247 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46798 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47124 * 119.99630 * 13 11 9 16 16 H 1.48492 * 109.47230 * 240.00044 * 13 11 9 17 17 C 1.46894 * 110.99956 * 349.64925 * 7 6 5 18 18 C 1.53005 * 109.47010 * 195.82638 * 17 7 6 19 19 C 1.52995 * 117.49686 * 242.69708 * 18 17 7 20 20 C 1.53003 * 117.49968 * 174.03332 * 18 17 7 21 21 N 1.36454 * 107.05155 * 0.22812 * 6 5 4 22 22 C 1.46501 * 127.13278 * 179.77059 * 21 6 5 23 23 C 1.52993 * 109.47199 * 96.31937 * 22 21 6 24 24 H 1.08993 * 109.47757 * 305.19144 * 23 22 21 25 25 F 1.39905 * 109.46740 * 65.18883 * 23 22 21 26 26 C 1.53006 * 109.47428 * 185.18333 * 23 22 21 27 27 O 1.42900 * 109.46709 * 55.00251 * 26 23 22 28 28 C 1.42898 * 114.00143 * 180.02562 * 27 26 23 29 29 H 1.08999 * 109.46706 * 60.00645 * 1 2 3 30 30 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47017 * 300.00350 * 1 2 3 32 32 H 1.08997 * 109.47017 * 239.99650 * 2 1 3 33 33 H 1.09001 * 109.46353 * 120.00036 * 2 1 3 34 34 H 1.09005 * 109.47175 * 66.66999 * 8 7 6 35 35 H 1.09000 * 109.47104 * 186.66614 * 8 7 6 36 36 H 0.96999 * 119.99937 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47682 * 315.82194 * 17 7 6 38 38 H 1.08997 * 109.47496 * 75.83027 * 17 7 6 39 39 H 1.08998 * 115.54604 * 28.36323 * 18 17 7 40 40 H 1.08999 * 117.50637 * 359.97438 * 19 18 17 41 41 H 1.09003 * 117.49833 * 145.02702 * 19 18 17 42 42 H 1.09000 * 117.50035 * 214.98053 * 20 18 17 43 43 H 1.09001 * 117.49557 * 359.97438 * 20 18 17 44 44 H 1.09009 * 109.47090 * 216.32311 * 22 21 6 45 45 H 1.09003 * 109.47273 * 336.32081 * 22 21 6 46 46 H 1.08998 * 109.47148 * 174.99869 * 26 23 22 47 47 H 1.08998 * 109.47046 * 295.00666 * 26 23 22 48 48 H 1.09002 * 109.46787 * 300.00249 * 28 27 26 49 49 H 1.08998 * 109.47122 * 59.99978 * 28 27 26 50 50 H 1.08998 * 109.47251 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1490 1.0495 5 7 2.7001 3.3123 0.6889 6 6 2.7281 3.3890 -0.6207 7 7 3.1154 4.4861 -1.3736 8 6 4.3488 4.2037 -2.1198 9 6 5.4085 3.7084 -1.1695 10 1 5.1658 3.5388 -0.1310 11 6 6.6879 3.4721 -1.6261 12 7 6.9833 3.6783 -2.8910 13 14 8.0016 2.8589 -0.4482 14 1 7.4182 2.7088 0.9092 15 1 8.5119 1.5452 -0.9162 16 1 9.1190 3.8357 -0.4009 17 6 3.2730 5.6763 -0.5271 18 6 3.3083 6.9272 -1.4074 19 6 4.5892 7.7638 -1.3950 20 6 3.3269 8.2858 -0.7040 21 7 2.2984 2.1863 -1.1013 22 6 2.1544 1.7955 -2.5058 23 6 3.4041 1.0353 -2.9544 24 1 4.2883 1.6415 -2.7577 25 9 3.4968 -0.1681 -2.2469 26 6 3.3111 0.7401 -4.4528 27 8 3.0994 1.9599 -5.1664 28 6 2.9969 1.7949 -6.5821 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.1512 3.4410 -2.8731 35 1 4.6952 5.1149 -2.6074 36 1 7.8834 3.5124 -3.2121 37 1 2.4342 5.7432 0.1657 38 1 4.2037 5.6015 0.0353 39 1 2.7633 6.8551 -2.3486 40 1 5.4067 7.4233 -0.7595 41 1 4.8866 8.2426 -2.3280 42 1 2.7945 9.1077 -1.1826 43 1 3.3136 8.2884 0.3860 44 1 1.2797 1.1545 -2.6168 45 1 2.0315 2.6874 -3.1204 46 1 4.2388 0.2780 -4.7903 47 1 2.4785 0.0615 -4.6384 48 1 3.9179 1.3544 -6.9641 49 1 2.1577 1.1383 -6.8115 50 1 2.8375 2.7661 -7.0505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454815245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -3.848294 kcal Electronic energy + Delta-G solvation = -32546.514523 eV Core-core repulsion = 28332.217836 eV Total energy + Delta-G solvation = -4214.296687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.93827 -43.82180 -39.42674 -39.00027 -37.15204 -36.36008 -34.83314 -34.32410 -32.29535 -30.12273 -29.25761 -28.15690 -27.08749 -26.65622 -25.12281 -24.30909 -23.16467 -23.11494 -22.09252 -21.25281 -20.86622 -18.86713 -18.43838 -18.08027 -17.55117 -17.29575 -17.12705 -16.62529 -16.48552 -16.25670 -16.15585 -15.65534 -15.52740 -15.26061 -14.99092 -14.71954 -14.64275 -14.45864 -13.84821 -13.62005 -13.50119 -13.38148 -13.18104 -13.16382 -12.79169 -12.74370 -12.52420 -12.45964 -12.32506 -12.30115 -12.24279 -12.10989 -12.04838 -11.92983 -11.77821 -11.25295 -11.17238 -10.96588 -10.71865 -10.65714 -10.65101 -10.43410 -9.08749 -8.26075 -6.38025 0.90717 1.22084 1.26731 1.38379 1.43421 1.97947 2.29569 2.51595 2.86942 3.02979 3.09811 3.27183 3.44386 3.52959 3.71663 3.81365 3.97329 4.05582 4.08119 4.17072 4.18007 4.30595 4.36261 4.38013 4.46468 4.53381 4.54903 4.58332 4.61632 4.67294 4.67822 4.83413 4.88427 4.92083 4.93424 5.02285 5.08316 5.12722 5.22509 5.24208 5.29571 5.33651 5.34839 5.39833 5.66877 5.74056 5.91082 6.02645 6.13863 6.47804 6.75050 7.30553 7.91992 8.77620 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.007561 B = 0.005544 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3702.087106 B = 5049.039419 C = 5652.381992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 C 0.178 3.822 4 N -0.331 5.331 5 N -0.374 5.374 6 C 0.397 3.603 7 N -0.455 5.455 8 C 0.208 3.792 9 C -0.552 4.552 10 H 0.037 0.963 11 C 0.039 3.961 12 N -0.900 5.900 13 Si 0.928 3.072 14 H -0.290 1.290 15 H -0.275 1.275 16 H -0.270 1.270 17 C 0.117 3.883 18 C -0.151 4.151 19 C -0.181 4.181 20 C -0.152 4.152 21 N -0.476 5.476 22 C 0.099 3.901 23 C 0.072 3.928 24 H 0.076 0.924 25 F -0.202 7.202 26 C 0.055 3.945 27 O -0.404 6.404 28 C 0.029 3.971 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -4.962 -7.630 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 C -0.091 4.091 4 N -0.169 5.169 5 N -0.218 5.218 6 C 0.039 3.961 7 N -0.179 5.179 8 C 0.084 3.916 9 C -0.591 4.591 10 H 0.055 0.945 11 C -0.163 4.163 12 N -0.539 5.539 13 Si 0.755 3.245 14 H -0.216 1.216 15 H -0.200 1.200 16 H -0.195 1.195 17 C -0.011 4.011 18 C -0.170 4.170 19 C -0.219 4.219 20 C -0.189 4.189 21 N -0.171 5.171 22 C -0.023 4.023 23 C 0.035 3.965 24 H 0.094 0.906 25 F -0.183 7.183 26 C -0.023 4.023 27 O -0.323 6.323 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.151 0.849 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.115 0.885 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.554 -4.283 -6.570 14.803 hybrid contribution 2.054 -0.939 -0.166 2.264 sum -10.501 -5.222 -6.736 13.524 Atomic orbital electron populations 1.21698 0.91836 1.03845 1.01980 1.20266 0.97814 0.84071 1.05488 1.25358 1.03813 0.98186 0.81723 1.73711 1.17980 0.99300 1.25942 1.74471 1.24148 1.14535 1.08616 1.22628 0.97820 0.86592 0.89043 1.59294 1.34485 0.99826 1.24246 1.19760 0.82261 0.97384 0.92224 1.21789 0.96424 1.45340 0.95528 0.94492 1.25316 0.99516 0.95347 0.96085 1.69989 1.20995 1.48641 1.14295 0.85974 0.80378 0.78764 0.79423 1.21605 1.20030 1.19521 1.21322 1.00115 0.86565 0.93077 1.22094 1.02736 0.90773 1.01357 1.22966 0.91711 1.04274 1.02904 1.23045 1.00220 0.95742 0.99890 1.46106 1.51082 1.11177 1.08736 1.22511 0.98815 1.03064 0.77935 1.21909 1.00470 0.82191 0.91947 0.90623 1.92759 1.97533 1.48020 1.80010 1.22792 1.02949 0.88029 0.88535 1.87882 1.93803 1.29939 1.20713 1.22961 1.01046 1.03817 0.78870 0.92526 0.88564 0.93219 0.88205 0.88510 0.94575 0.94402 0.92442 0.91254 0.95181 0.87097 0.90889 0.88135 0.86258 0.88752 0.84867 0.86186 0.91751 0.88511 0.93705 0.91520 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.90 71.98 0.71 -1.97 16 2 C -0.04 -0.97 6.20 29.85 0.19 -0.79 16 3 C 0.18 6.75 7.10 137.64 0.98 7.73 16 4 N -0.33 -15.20 12.18 -49.54 -0.60 -15.80 16 5 N -0.37 -18.49 10.93 -58.00 -0.63 -19.12 16 6 C 0.40 18.04 5.50 260.11 1.43 19.47 16 7 N -0.46 -20.15 4.66 -710.36 -3.31 -23.46 16 8 C 0.21 10.28 4.79 85.56 0.41 10.69 16 9 C -0.55 -30.66 7.37 25.60 0.19 -30.48 16 10 H 0.04 2.26 6.68 -2.91 -0.02 2.24 16 11 C 0.04 2.17 5.46 84.66 0.46 2.63 16 12 N -0.90 -50.18 13.29 21.45 0.28 -49.89 16 13 Si 0.93 45.70 29.54 68.60 2.03 47.72 16 14 H -0.29 -15.15 7.11 99.48 0.71 -14.45 16 15 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 C 0.12 4.90 4.65 86.31 0.40 5.30 16 18 C -0.15 -5.23 4.98 -10.79 -0.05 -5.28 16 19 C -0.18 -6.04 10.18 30.62 0.31 -5.73 16 20 C -0.15 -4.17 10.26 30.62 0.31 -3.85 16 21 N -0.48 -18.40 2.80 -514.85 -1.44 -19.84 16 22 C 0.10 3.03 4.68 86.38 0.40 3.44 16 23 C 0.07 2.36 3.62 30.59 0.11 2.47 16 24 H 0.08 3.35 6.02 -2.39 -0.01 3.33 16 25 F -0.20 -6.56 14.63 44.97 0.66 -5.90 16 26 C 0.05 1.37 5.89 71.98 0.42 1.79 16 27 O -0.40 -11.06 9.73 -148.98 -1.45 -12.51 16 28 C 0.03 0.53 11.01 113.37 1.25 1.78 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 2.41 5.72 -2.39 -0.01 2.39 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 1.82 4.77 -2.38 -0.01 1.81 16 35 H 0.04 2.00 7.26 -2.39 -0.02 1.98 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.07 2.88 7.68 -2.39 -0.02 2.86 16 38 H 0.03 1.45 6.81 -2.39 -0.02 1.44 16 39 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 40 H 0.07 2.76 8.03 -2.39 -0.02 2.74 16 41 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 44 H 0.13 2.93 8.09 -2.38 -0.02 2.91 16 45 H 0.12 3.83 7.07 -2.39 -0.02 3.81 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.38 402.94 3.99 -67.38 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.93 Total: 24.20 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 7.53 Total: 7.21 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.70 Total: -128.12 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.45 Total: -12.51 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.66 Total: -5.90 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.38 3.99 -67.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454815245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.536 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds