Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99806 * 2 1 4 4 C 1.52999 * 109.47218 * 66.04819 * 3 2 1 5 5 C 1.53007 * 109.47246 * 179.97438 * 4 3 2 6 6 C 1.52992 * 117.49987 * 243.74721 * 5 4 3 7 7 C 1.53002 * 117.49846 * 175.08566 * 5 4 3 8 8 C 1.46897 * 110.99736 * 236.04994 * 2 1 3 9 9 C 1.52998 * 109.47185 * 199.60562 * 8 2 1 10 10 H 1.09009 * 109.49413 * 304.95814 * 9 8 2 11 11 C 1.53039 * 109.49917 * 184.89660 * 9 8 2 12 12 C 1.53039 * 109.53755 * 178.68003 * 11 9 8 13 13 C 1.53195 * 109.31546 * 61.36275 * 12 11 9 14 14 N 1.46927 * 108.77294 * 305.36726 * 13 12 11 15 15 C 1.34776 * 120.62901 * 233.58180 * 14 13 12 16 16 O 1.21286 * 120.00185 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00097 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47365 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00053 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99753 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00193 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99843 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47020 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47002 * 119.99891 * 23 21 19 26 26 H 1.48492 * 109.47473 * 240.00137 * 23 21 19 27 27 C 1.46926 * 118.74035 * 53.85987 * 14 13 12 28 28 H 1.08997 * 109.47354 * 187.90379 * 1 2 3 29 29 H 1.09008 * 109.47049 * 307.90249 * 1 2 3 30 30 H 1.09000 * 109.47409 * 67.90203 * 1 2 3 31 31 H 1.09006 * 109.47051 * 186.05032 * 3 2 1 32 32 H 1.08998 * 109.47756 * 306.04854 * 3 2 1 33 33 H 1.08994 * 109.47195 * 299.99722 * 4 3 2 34 34 H 1.09000 * 109.47157 * 60.00045 * 4 3 2 35 35 H 1.08996 * 115.54522 * 29.42035 * 5 4 3 36 36 H 1.08994 * 117.50432 * 0.02562 * 6 5 4 37 37 H 1.09004 * 117.49660 * 145.01858 * 6 5 4 38 38 H 1.09000 * 117.49896 * 214.98066 * 7 5 4 39 39 H 1.08999 * 117.49578 * 359.97438 * 7 5 4 40 40 H 1.08997 * 109.47669 * 79.60070 * 8 2 1 41 41 H 1.09003 * 109.46805 * 319.59879 * 8 2 1 42 42 H 1.08993 * 109.46306 * 58.65803 * 11 9 8 43 43 H 1.09005 * 109.45676 * 298.69692 * 11 9 8 44 44 H 1.09001 * 109.50049 * 301.41185 * 12 11 9 45 45 H 1.09007 * 109.49962 * 181.31410 * 12 11 9 46 46 H 1.09000 * 109.59234 * 185.57800 * 13 12 11 47 47 H 1.09002 * 109.58819 * 65.15019 * 13 12 11 48 48 H 1.09009 * 109.46983 * 60.00326 * 17 15 14 49 49 H 1.08998 * 109.47237 * 300.00113 * 17 15 14 50 50 H 0.97002 * 119.99594 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.58746 * 65.92580 * 27 14 13 52 52 H 1.09000 * 109.58632 * 186.35557 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1803 3.4857 1.3185 6 6 3.2442 3.8334 2.3615 7 6 1.8218 4.3800 2.5071 8 6 1.9954 -0.7659 -1.1376 9 6 3.4467 -1.1614 -0.8584 10 1 4.0294 -0.2690 -0.6294 11 6 4.0341 -1.8525 -2.0911 12 6 5.4958 -2.2190 -1.8245 13 6 5.5668 -3.1931 -0.6443 14 7 4.8756 -2.5940 0.5055 15 6 5.4964 -2.4789 1.6962 16 8 4.9148 -1.9829 2.6379 17 6 6.9129 -2.9673 1.8578 18 16 7.4619 -2.6745 3.5575 19 6 9.0987 -3.3201 3.4659 20 1 9.4656 -3.7317 2.5373 21 6 9.9166 -3.2997 4.5872 22 7 9.4692 -2.7985 5.7191 23 14 11.6517 -3.9849 4.4902 24 1 11.9099 -4.4861 3.1165 25 1 12.6261 -2.9129 4.8168 26 1 11.7987 -5.0996 5.4601 27 6 3.4925 -2.1286 0.3343 28 1 -0.3634 -1.0179 0.1413 29 1 -0.3633 0.6314 0.8109 30 1 -0.3634 0.3866 -0.9522 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8308 33 1 0.5472 2.0845 1.4265 34 1 2.0658 1.5015 2.1492 35 1 2.2616 3.9581 0.3397 36 1 3.5536 3.0447 3.0472 37 1 4.0254 4.5350 2.0688 38 1 1.6678 5.4409 2.3102 39 1 1.1947 3.9510 3.2886 40 1 1.9524 -0.1541 -2.0387 41 1 1.3949 -1.6645 -1.2796 42 1 3.9788 -1.1787 -2.9460 43 1 3.4659 -2.7578 -2.3051 44 1 6.0595 -1.3170 -1.5861 45 1 5.9203 -2.6902 -2.7111 46 1 6.6094 -3.3802 -0.3869 47 1 5.0812 -4.1308 -0.9146 48 1 7.5637 -2.4293 1.1684 49 1 6.9562 -4.0345 1.6405 50 1 10.0407 -2.7846 6.5028 51 1 2.8412 -2.9812 0.1421 52 1 3.1661 -1.6129 1.2374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480072616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -20.318103 kcal Electronic energy + Delta-G solvation = -27856.824332 eV Core-core repulsion = 24175.733885 eV Total energy + Delta-G solvation = -3681.090447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97859 -38.59194 -37.47789 -36.49703 -33.25819 -32.39608 -31.68887 -30.45441 -29.24292 -26.97477 -25.53372 -25.04899 -24.78614 -22.71310 -22.46076 -21.21451 -20.53286 -20.25100 -18.92226 -17.59997 -16.61342 -16.16901 -15.95897 -15.44210 -15.42204 -15.04203 -14.87728 -14.77592 -14.56117 -14.10590 -13.87708 -13.78565 -13.50688 -13.20479 -13.11723 -12.82371 -12.57971 -12.41111 -12.11867 -12.00157 -11.80304 -11.70209 -11.65541 -11.45597 -11.36432 -11.15171 -11.05092 -10.98235 -10.84579 -10.72809 -10.65843 -10.49915 -10.31709 -9.94240 -9.75176 -9.21692 -9.04282 -8.52865 -8.34413 -8.16529 -6.45330 -6.18397 -3.88174 3.04334 3.17783 3.23491 3.29392 3.33796 3.56432 3.68252 3.72473 4.23450 4.47637 4.63250 4.69289 4.72417 4.76666 4.78961 4.87085 4.96471 5.01496 5.07464 5.12362 5.16669 5.21809 5.24649 5.34726 5.38995 5.41324 5.46878 5.47755 5.52070 5.55310 5.57694 5.66273 5.71408 5.74333 5.78932 5.81034 5.86620 5.89323 5.95219 5.96900 5.98682 6.04674 6.17775 6.23655 6.26153 6.30795 6.79770 6.86664 6.87941 7.62867 7.71399 8.38663 8.69953 9.26950 10.89033 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.002767 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.290687 B =10116.060032 C =12009.633572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.059 3.941 4 C -0.087 4.087 5 C -0.154 4.154 6 C -0.177 4.177 7 C -0.182 4.182 8 C 0.064 3.936 9 C -0.097 4.097 10 H 0.076 0.924 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.621 5.621 15 C 0.534 3.466 16 O -0.515 6.515 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.267 0.733 51 H 0.056 0.944 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 7.142 -18.184 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.068 4.068 4 C -0.125 4.125 5 C -0.173 4.173 6 C -0.214 4.214 7 C -0.219 4.219 8 C -0.065 4.065 9 C -0.117 4.117 10 H 0.094 0.906 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.017 4.017 14 N -0.357 5.357 15 C 0.322 3.678 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.006 3.994 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.674 7.679 -16.149 25.142 hybrid contribution 1.579 -0.594 -2.040 2.647 sum -16.095 7.085 -18.188 25.299 Atomic orbital electron populations 1.22434 0.87486 1.02421 1.00216 1.61906 1.07585 1.13816 1.43101 1.22127 1.00604 0.87564 0.96543 1.21196 1.00416 0.92536 0.98311 1.22257 1.04117 0.96350 0.94551 1.23087 0.92025 1.03812 1.02513 1.22954 0.99196 0.99038 1.00759 1.22107 0.95573 0.97636 0.91145 1.21612 0.95311 0.99231 0.95519 0.90572 1.21538 0.95992 1.00423 0.97169 1.21904 0.96877 1.00287 0.98157 1.21697 0.98482 0.95543 0.85938 1.48135 1.14510 1.62631 1.10441 1.20283 0.87877 0.77974 0.81695 1.90691 1.66614 1.43063 1.38573 1.23553 0.95133 1.03702 1.07679 1.85402 1.14870 1.80729 1.02477 1.22903 0.98983 1.46427 0.99860 0.90968 1.24989 0.98978 0.95108 0.94538 1.70033 1.36636 1.42750 1.00845 0.86131 0.82551 0.78641 0.78254 1.19639 1.20602 1.20588 1.21531 0.81832 0.96432 0.99576 0.91380 0.91051 0.95977 0.90443 0.95209 0.91751 0.90422 0.88256 0.88195 0.88984 0.89129 0.88825 0.94503 0.90749 0.92019 0.91792 0.91353 0.90812 0.89385 0.91713 0.89451 0.89439 0.92287 0.92550 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.36 60.07 0.56 0.74 16 2 N -0.54 -5.26 4.27 -242.92 -1.04 -6.30 16 3 C 0.06 0.57 4.74 -3.83 -0.02 0.55 16 4 C -0.09 -0.85 5.44 -26.73 -0.15 -1.00 16 5 C -0.15 -1.44 5.73 -90.62 -0.52 -1.96 16 6 C -0.18 -1.82 10.18 -26.70 -0.27 -2.09 16 7 C -0.18 -1.64 10.26 -26.69 -0.27 -1.91 16 8 C 0.06 0.56 4.39 -3.83 -0.02 0.54 16 9 C -0.10 -0.99 2.40 -90.28 -0.22 -1.20 16 10 H 0.08 0.91 6.66 -51.92 -0.35 0.57 16 11 C -0.11 -0.95 5.16 -26.69 -0.14 -1.08 16 12 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 13 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 14 N -0.62 -9.27 2.97 -172.50 -0.51 -9.78 16 15 C 0.53 10.58 7.72 -10.98 -0.08 10.50 16 16 O -0.52 -12.20 15.28 5.55 0.08 -12.12 16 17 C -0.15 -3.14 4.50 36.01 0.16 -2.98 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.13 1.69 5.56 -3.49 -0.02 1.67 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.56 6.15 -51.92 -0.32 0.24 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.83 6.56 -51.93 -0.34 0.49 16 32 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.06 0.58 6.40 -51.93 -0.33 0.24 16 34 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.30 8.00 -51.93 -0.42 -0.12 16 41 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.70 7.69 -51.91 -0.40 1.30 16 49 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 50 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.10 1.67 6.79 -51.93 -0.35 1.31 16 LS Contribution 417.88 15.07 6.30 6.30 Total: -1.00 -33.69 417.88 -12.13 -45.82 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.50 Total: 0.56 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.97 Total: -11.47 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.82 Total: -41.71 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.69 -12.13 -45.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480072616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.503 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds