Wall clock time and date at job start Sat Apr 11 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00069 * 2 1 4 4 C 1.53008 * 109.46719 * 293.95178 * 3 2 1 5 5 C 1.53008 * 109.46745 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49666 * 243.74626 * 5 4 3 7 7 C 1.53003 * 117.49556 * 175.08900 * 5 4 3 8 8 C 1.46904 * 110.99846 * 123.95515 * 2 1 3 9 9 C 1.52995 * 109.47423 * 72.18915 * 8 2 1 10 10 H 1.09008 * 109.49366 * 303.06256 * 9 8 2 11 11 C 1.53031 * 109.50280 * 63.12923 * 9 8 2 12 12 C 1.53036 * 109.54281 * 181.31711 * 11 9 8 13 13 C 1.53192 * 109.31143 * 298.63478 * 12 11 9 14 14 N 1.46932 * 108.77562 * 54.63542 * 13 12 11 15 15 C 1.34774 * 120.63108 * 126.36485 * 14 13 12 16 16 O 1.21282 * 120.00052 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00381 * 0.02562 * 15 14 13 18 18 S 1.80994 * 109.47304 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00125 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99779 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00209 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99857 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47261 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47574 * 119.99594 * 23 21 19 26 26 H 1.48506 * 109.47234 * 239.99826 * 23 21 19 27 27 C 1.46926 * 118.73329 * 306.39100 * 14 13 12 28 28 H 1.08993 * 109.47082 * 63.34386 * 1 2 3 29 29 H 1.09004 * 109.46874 * 183.34420 * 1 2 3 30 30 H 1.08995 * 109.47018 * 303.33919 * 1 2 3 31 31 H 1.08994 * 109.47340 * 53.95252 * 3 2 1 32 32 H 1.09000 * 109.47201 * 173.95520 * 3 2 1 33 33 H 1.08994 * 109.47274 * 300.00114 * 4 3 2 34 34 H 1.09000 * 109.47005 * 60.00222 * 4 3 2 35 35 H 1.08999 * 115.54668 * 29.42042 * 5 4 3 36 36 H 1.09000 * 117.49909 * 0.02562 * 6 5 4 37 37 H 1.09004 * 117.49646 * 145.02564 * 6 5 4 38 38 H 1.08998 * 117.49708 * 214.97963 * 7 5 4 39 39 H 1.08998 * 117.49898 * 359.97438 * 7 5 4 40 40 H 1.09001 * 109.46541 * 192.18820 * 8 2 1 41 41 H 1.08999 * 109.46775 * 312.18356 * 8 2 1 42 42 H 1.08996 * 109.46219 * 301.34103 * 11 9 8 43 43 H 1.09004 * 109.45797 * 61.30813 * 11 9 8 44 44 H 1.09005 * 109.49801 * 58.58300 * 12 11 9 45 45 H 1.09002 * 109.50104 * 178.68399 * 12 11 9 46 46 H 1.09004 * 109.58838 * 174.41560 * 13 12 11 47 47 H 1.08992 * 109.58792 * 294.84321 * 13 12 11 48 48 H 1.09005 * 109.46936 * 299.99891 * 17 15 14 49 49 H 1.08998 * 109.47061 * 59.99146 * 17 15 14 50 50 H 0.96998 * 119.99856 * 180.02562 * 22 21 19 51 51 H 1.08995 * 109.58769 * 293.81620 * 27 14 13 52 52 H 1.09004 * 109.58246 * 173.39764 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 -1.3184 5 6 2.1792 3.4860 -1.3181 6 6 1.1660 4.6310 -1.3727 7 6 2.0190 4.3042 -2.6010 8 6 1.9954 -0.7660 1.1376 9 6 1.7663 -2.2594 0.8967 10 1 0.7036 -2.4435 0.7386 11 6 2.5512 -2.7038 -0.3396 12 6 2.2966 -4.1901 -0.6006 13 6 2.7841 -5.0062 0.6007 14 7 2.1416 -4.4883 1.8164 15 6 1.4673 -5.3135 2.6415 16 8 0.9416 -4.8738 3.6422 17 6 1.3674 -6.7827 2.3214 18 16 0.4075 -7.6168 3.6093 19 6 0.4479 -9.2693 2.9991 20 1 0.9674 -9.4926 2.0790 21 6 -0.1888 -10.2839 3.7004 22 7 -0.8225 -10.0116 4.8216 23 14 -0.1454 -12.0358 3.0539 24 1 0.6261 -12.0765 1.7856 25 1 0.5037 -12.9177 4.0569 26 1 -1.5318 -12.5061 2.8047 27 6 2.2477 -3.0536 2.1150 28 1 -0.3633 0.4610 -0.9184 29 1 -0.3633 -1.0260 0.0600 30 1 -0.3633 0.5648 0.8585 31 1 1.5611 1.9273 0.8308 32 1 3.0797 1.3443 0.1082 33 1 2.0658 1.5014 -2.1492 34 1 0.5472 2.0843 -1.4266 35 1 3.0843 3.6422 -0.7312 36 1 0.1091 4.3666 -1.4084 37 1 1.4047 5.5410 -0.8220 38 1 2.8184 4.9991 -2.8579 39 1 1.5237 3.8246 -3.4453 40 1 3.0634 -0.5744 1.2415 41 1 1.4813 -0.4619 2.0494 42 1 2.2278 -2.1229 -1.2032 43 1 3.6159 -2.5420 -0.1712 44 1 1.2290 -4.3566 -0.7444 45 1 2.8374 -4.5004 -1.4947 46 1 2.5161 -6.0538 0.4638 47 1 3.8663 -4.9126 0.6911 48 1 0.8734 -6.9119 1.3583 49 1 2.3675 -7.2138 2.2774 50 1 -1.2671 -10.7207 5.3119 51 1 3.2861 -2.8008 2.3290 52 1 1.6258 -2.8129 2.9772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480072630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:20 Heat of formation + Delta-G solvation = -20.992504 kcal Electronic energy + Delta-G solvation = -27081.531905 eV Core-core repulsion = 23400.412215 eV Total energy + Delta-G solvation = -3681.119691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03955 -38.76127 -37.70365 -36.53986 -33.31488 -32.41865 -31.79701 -30.52994 -29.12560 -27.24539 -25.54750 -25.36790 -24.69819 -22.82713 -22.38671 -21.58973 -20.76504 -20.14878 -18.97344 -17.63061 -16.67518 -16.30448 -16.21006 -15.73771 -15.38421 -15.16775 -14.79654 -14.73955 -14.44510 -14.38115 -14.06307 -13.82879 -13.66218 -13.39473 -13.12652 -12.72088 -12.62578 -12.50408 -12.23167 -12.15462 -11.98619 -11.85205 -11.78834 -11.62349 -11.36042 -11.15048 -11.06482 -11.00375 -10.85538 -10.78486 -10.74030 -10.53468 -10.44288 -10.27513 -9.77705 -9.30862 -9.06377 -8.61704 -8.43828 -8.20157 -6.48562 -6.20662 -3.90946 2.95257 3.09337 3.22196 3.26855 3.31678 3.35000 3.54447 3.67365 4.21284 4.29141 4.47471 4.50836 4.52508 4.68084 4.73191 4.82750 4.90334 4.96219 5.03886 5.07778 5.10491 5.14608 5.19444 5.21010 5.25591 5.26814 5.32431 5.39416 5.43657 5.47589 5.53047 5.58060 5.63805 5.66728 5.67592 5.71114 5.76444 5.77496 5.79266 5.90605 5.93208 5.99533 6.02921 6.14287 6.20953 6.30958 6.67308 6.75412 6.80110 7.60516 7.62795 8.36544 8.60694 9.24781 10.86849 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030739 B = 0.001724 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.678810 B =16235.514166 C =16486.810617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.539 5.539 3 C 0.058 3.942 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.183 4.183 7 C -0.180 4.180 8 C 0.061 3.939 9 C -0.097 4.097 10 H 0.075 0.925 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.107 3.893 14 N -0.618 5.618 15 C 0.535 3.465 16 O -0.520 6.520 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.062 0.938 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 25.622 -15.410 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.069 4.069 4 C -0.123 4.123 5 C -0.171 4.171 6 C -0.220 4.220 7 C -0.217 4.217 8 C -0.067 4.067 9 C -0.116 4.116 10 H 0.094 0.906 11 C -0.140 4.140 12 C -0.175 4.175 13 C -0.016 4.016 14 N -0.354 5.354 15 C 0.323 3.677 16 O -0.394 6.394 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.005 4.005 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.636 25.957 -14.186 30.550 hybrid contribution 0.368 -1.193 -0.872 1.523 sum 8.004 24.764 -15.058 30.068 Atomic orbital electron populations 1.22481 0.87431 1.02317 1.00665 1.61928 1.07966 1.13132 1.43184 1.22116 1.00043 0.87993 0.96792 1.21171 1.00628 0.92460 0.98006 1.22306 1.00818 0.92505 1.01433 1.23055 0.97097 0.99751 1.02076 1.22964 1.03107 1.03551 0.92127 1.22081 1.00129 0.93131 0.91346 1.21520 1.01154 0.93234 0.95723 0.90625 1.21428 0.99526 0.94983 0.98058 1.21955 1.02113 0.95898 0.97552 1.21737 0.97029 0.98914 0.83947 1.48052 1.54926 1.07775 1.24632 1.20326 0.76909 0.87997 0.82474 1.90682 1.45387 1.77081 1.26258 1.23547 1.05678 0.94247 1.06555 1.85396 1.66707 1.03632 1.27840 1.22905 1.40084 0.93123 1.12118 0.90899 1.24990 0.94547 0.99370 0.94677 1.70032 1.32368 1.33354 1.14542 0.86120 0.78010 0.82563 0.78821 1.19609 1.20572 1.20583 1.21470 1.01177 0.80032 0.97824 0.91366 0.91029 0.95596 0.94828 0.90806 0.90700 0.91779 0.87874 0.88869 0.89011 0.88915 0.88784 0.90687 0.94345 0.90517 0.92352 0.91514 0.90889 0.89402 0.91641 0.89296 0.89306 0.92262 0.91989 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.12 60.07 0.55 0.70 16 2 N -0.54 -4.34 4.07 -242.92 -0.99 -5.33 16 3 C 0.06 0.40 4.91 -3.82 -0.02 0.39 16 4 C -0.08 -0.54 5.42 -26.72 -0.14 -0.68 16 5 C -0.15 -0.89 5.73 -90.61 -0.52 -1.41 16 6 C -0.18 -1.03 10.18 -26.69 -0.27 -1.30 16 7 C -0.18 -0.99 10.25 -26.69 -0.27 -1.26 16 8 C 0.06 0.53 4.39 -3.82 -0.02 0.51 16 9 C -0.10 -0.97 2.34 -90.51 -0.21 -1.18 16 10 H 0.08 0.88 6.55 -51.92 -0.34 0.54 16 11 C -0.10 -0.92 5.05 -26.70 -0.13 -1.05 16 12 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 13 C 0.11 1.22 6.34 -3.71 -0.02 1.19 16 14 N -0.62 -9.02 2.97 -172.77 -0.51 -9.54 16 15 C 0.53 10.43 7.72 -10.99 -0.08 10.34 16 16 O -0.52 -12.10 15.27 5.56 0.08 -12.02 16 17 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 19 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.12 1.47 5.72 -3.71 -0.02 1.45 16 28 H 0.07 0.49 6.63 -51.93 -0.34 0.15 16 29 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 30 H 0.03 0.21 8.11 -51.93 -0.42 -0.21 16 31 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.42 6.36 -51.93 -0.33 0.09 16 35 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.58 7.80 -51.93 -0.41 0.18 16 41 H 0.04 0.35 8.05 -51.93 -0.42 -0.07 16 42 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.71 7.69 -51.91 -0.40 1.31 16 49 H 0.09 1.71 7.94 -51.92 -0.41 1.30 16 50 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 LS Contribution 417.34 15.07 6.29 6.29 Total: -1.00 -33.37 417.34 -12.09 -45.46 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -9.49 Total: -2.12 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.98 Total: -9.71 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.77 Total: -40.42 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.37 -12.09 -45.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480072630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.466 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds