Wall clock time and date at job start Sat Apr 11 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00069 * 2 1 4 4 C 1.53008 * 109.46719 * 293.95178 * 3 2 1 5 5 C 1.53008 * 109.46745 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49666 * 243.74626 * 5 4 3 7 7 C 1.53003 * 117.49556 * 175.08900 * 5 4 3 8 8 C 1.46904 * 110.99846 * 123.95515 * 2 1 3 9 9 C 1.52995 * 109.47423 * 72.18915 * 8 2 1 10 10 H 1.09008 * 109.49366 * 303.06256 * 9 8 2 11 11 C 1.53031 * 109.50280 * 63.12923 * 9 8 2 12 12 C 1.53036 * 109.54281 * 181.31711 * 11 9 8 13 13 C 1.53192 * 109.31143 * 298.63478 * 12 11 9 14 14 N 1.46932 * 108.77562 * 54.63542 * 13 12 11 15 15 C 1.34774 * 120.63108 * 126.36485 * 14 13 12 16 16 O 1.21282 * 120.00052 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00381 * 0.02562 * 15 14 13 18 18 S 1.80994 * 109.47304 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00125 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99779 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00209 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99857 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47261 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47574 * 119.99594 * 23 21 19 26 26 H 1.48506 * 109.47234 * 239.99826 * 23 21 19 27 27 C 1.46926 * 118.73329 * 306.39100 * 14 13 12 28 28 H 1.08993 * 109.47082 * 63.34386 * 1 2 3 29 29 H 1.09004 * 109.46874 * 183.34420 * 1 2 3 30 30 H 1.08995 * 109.47018 * 303.33919 * 1 2 3 31 31 H 1.08994 * 109.47340 * 53.95252 * 3 2 1 32 32 H 1.09000 * 109.47201 * 173.95520 * 3 2 1 33 33 H 1.08994 * 109.47274 * 300.00114 * 4 3 2 34 34 H 1.09000 * 109.47005 * 60.00222 * 4 3 2 35 35 H 1.08999 * 115.54668 * 29.42042 * 5 4 3 36 36 H 1.09000 * 117.49909 * 0.02562 * 6 5 4 37 37 H 1.09004 * 117.49646 * 145.02564 * 6 5 4 38 38 H 1.08998 * 117.49708 * 214.97963 * 7 5 4 39 39 H 1.08998 * 117.49898 * 359.97438 * 7 5 4 40 40 H 1.09001 * 109.46541 * 192.18820 * 8 2 1 41 41 H 1.08999 * 109.46775 * 312.18356 * 8 2 1 42 42 H 1.08996 * 109.46219 * 301.34103 * 11 9 8 43 43 H 1.09004 * 109.45797 * 61.30813 * 11 9 8 44 44 H 1.09005 * 109.49801 * 58.58300 * 12 11 9 45 45 H 1.09002 * 109.50104 * 178.68399 * 12 11 9 46 46 H 1.09004 * 109.58838 * 174.41560 * 13 12 11 47 47 H 1.08992 * 109.58792 * 294.84321 * 13 12 11 48 48 H 1.09005 * 109.46936 * 299.99891 * 17 15 14 49 49 H 1.08998 * 109.47061 * 59.99146 * 17 15 14 50 50 H 0.96998 * 119.99856 * 180.02562 * 22 21 19 51 51 H 1.08995 * 109.58769 * 293.81620 * 27 14 13 52 52 H 1.09004 * 109.58246 * 173.39764 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 -1.3184 5 6 2.1792 3.4860 -1.3181 6 6 1.1660 4.6310 -1.3727 7 6 2.0190 4.3042 -2.6010 8 6 1.9954 -0.7660 1.1376 9 6 1.7663 -2.2594 0.8967 10 1 0.7036 -2.4435 0.7386 11 6 2.5512 -2.7038 -0.3396 12 6 2.2966 -4.1901 -0.6006 13 6 2.7841 -5.0062 0.6007 14 7 2.1416 -4.4883 1.8164 15 6 1.4673 -5.3135 2.6415 16 8 0.9416 -4.8738 3.6422 17 6 1.3674 -6.7827 2.3214 18 16 0.4075 -7.6168 3.6093 19 6 0.4479 -9.2693 2.9991 20 1 0.9674 -9.4926 2.0790 21 6 -0.1888 -10.2839 3.7004 22 7 -0.8225 -10.0116 4.8216 23 14 -0.1454 -12.0358 3.0539 24 1 0.6261 -12.0765 1.7856 25 1 0.5037 -12.9177 4.0569 26 1 -1.5318 -12.5061 2.8047 27 6 2.2477 -3.0536 2.1150 28 1 -0.3633 0.4610 -0.9184 29 1 -0.3633 -1.0260 0.0600 30 1 -0.3633 0.5648 0.8585 31 1 1.5611 1.9273 0.8308 32 1 3.0797 1.3443 0.1082 33 1 2.0658 1.5014 -2.1492 34 1 0.5472 2.0843 -1.4266 35 1 3.0843 3.6422 -0.7312 36 1 0.1091 4.3666 -1.4084 37 1 1.4047 5.5410 -0.8220 38 1 2.8184 4.9991 -2.8579 39 1 1.5237 3.8246 -3.4453 40 1 3.0634 -0.5744 1.2415 41 1 1.4813 -0.4619 2.0494 42 1 2.2278 -2.1229 -1.2032 43 1 3.6159 -2.5420 -0.1712 44 1 1.2290 -4.3566 -0.7444 45 1 2.8374 -4.5004 -1.4947 46 1 2.5161 -6.0538 0.4638 47 1 3.8663 -4.9126 0.6911 48 1 0.8734 -6.9119 1.3583 49 1 2.3675 -7.2138 2.2774 50 1 -1.2671 -10.7207 5.3119 51 1 3.2861 -2.8008 2.3290 52 1 1.6258 -2.8129 2.9772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480072630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:20 Heat of formation + Delta-G solvation = -39.911352 kcal Electronic energy + Delta-G solvation = -27082.352288 eV Core-core repulsion = 23400.412215 eV Total energy + Delta-G solvation = -3681.940074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24174 -39.54451 -38.51089 -37.41376 -34.59300 -34.34737 -32.70705 -31.41347 -30.39422 -28.01393 -27.67526 -26.25054 -25.67071 -23.29675 -23.15114 -22.36097 -21.26652 -21.03843 -20.33259 -19.44740 -18.14982 -17.22013 -16.88820 -16.73717 -16.66081 -16.42346 -16.29166 -15.79906 -15.46139 -15.22254 -15.14937 -14.75165 -14.57886 -14.43637 -14.35015 -14.09036 -13.80460 -13.44518 -13.21968 -13.15523 -12.98860 -12.91992 -12.83178 -12.60805 -12.49978 -12.36360 -12.15887 -11.98673 -11.86530 -11.73269 -11.69846 -11.56893 -11.29070 -11.16227 -11.05516 -10.83452 -10.72985 -10.26530 -9.64643 -9.27884 -8.68256 -8.35113 -6.13734 1.25259 1.41441 1.45660 1.56011 1.57705 2.09840 2.26896 2.85463 2.98801 2.99192 3.25043 3.62936 3.76186 3.84229 3.93654 4.01178 4.05212 4.07830 4.14301 4.20184 4.24876 4.30183 4.38264 4.39913 4.43502 4.45955 4.51949 4.59991 4.63523 4.70797 4.74718 4.78254 4.80965 4.85602 4.88531 4.97252 5.02348 5.08088 5.08836 5.15111 5.20119 5.23248 5.28621 5.41557 5.43521 5.46507 5.53058 5.58872 6.07592 6.14643 6.19617 6.30478 7.06116 7.13926 8.74502 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030739 B = 0.001724 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.678810 B =16235.514166 C =16486.810617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.061 3.939 4 C -0.078 4.078 5 C -0.156 4.156 6 C -0.187 4.187 7 C -0.180 4.180 8 C 0.066 3.934 9 C -0.087 4.087 10 H 0.054 0.946 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.098 3.902 14 N -0.605 5.605 15 C 0.531 3.469 16 O -0.570 6.570 17 C -0.122 4.122 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.116 3.884 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.029 0.971 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.086 0.914 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 25.837 -18.146 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.067 4.067 4 C -0.115 4.115 5 C -0.174 4.174 6 C -0.224 4.224 7 C -0.217 4.217 8 C -0.062 4.062 9 C -0.106 4.106 10 H 0.073 0.927 11 C -0.132 4.132 12 C -0.169 4.169 13 C -0.024 4.024 14 N -0.339 5.339 15 C 0.319 3.681 16 O -0.449 6.449 17 C -0.273 4.273 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.007 4.007 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.104 0.896 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.746 26.208 -16.976 32.711 hybrid contribution -0.224 -1.121 -0.082 1.146 sum 9.522 25.087 -17.058 31.796 Atomic orbital electron populations 1.22453 0.87696 1.01591 1.00977 1.61939 1.07762 1.13858 1.42671 1.22135 1.00418 0.87174 0.96958 1.21082 1.00319 0.92695 0.97439 1.22315 1.01031 0.92199 1.01892 1.23108 0.97039 0.99915 1.02378 1.23026 1.03202 1.03479 0.91990 1.22013 1.00962 0.92089 0.91149 1.21396 1.00064 0.93956 0.95229 0.92718 1.21383 1.00098 0.94500 0.97206 1.21934 1.01484 0.95948 0.97556 1.22081 0.98282 0.99039 0.82963 1.48085 1.53022 1.08243 1.24509 1.20146 0.77409 0.87913 0.82641 1.90665 1.47948 1.77654 1.28596 1.23359 1.05203 0.94629 1.04142 1.85589 1.69130 1.05510 1.32398 1.23228 1.40355 0.93188 1.12507 0.89889 1.26139 0.93738 1.04513 0.94727 1.70196 1.33393 1.35081 1.16153 0.84890 0.78381 0.75910 0.78669 1.17929 1.19885 1.19936 1.21641 1.02122 0.78813 0.98091 0.90408 0.92181 0.96041 0.95298 0.89952 0.90996 0.92210 0.87452 0.89052 0.88538 0.88210 0.88728 0.89106 0.95395 0.90116 0.90772 0.93047 0.88263 0.89706 0.89013 0.87666 0.87441 0.91992 0.89573 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.12 127.69 1.16 1.49 16 2 N -0.54 -7.90 4.07 -922.47 -3.75 -11.65 16 3 C 0.06 0.74 4.91 86.31 0.42 1.16 16 4 C -0.08 -0.86 5.42 30.60 0.17 -0.69 16 5 C -0.16 -1.58 5.73 -10.79 -0.06 -1.64 16 6 C -0.19 -1.88 10.18 30.62 0.31 -1.57 16 7 C -0.18 -1.70 10.25 30.62 0.31 -1.39 16 8 C 0.07 1.04 4.39 86.30 0.38 1.42 16 9 C -0.09 -1.63 2.34 -10.72 -0.03 -1.65 16 10 H 0.05 1.28 6.55 -2.38 -0.02 1.26 16 11 C -0.09 -1.41 5.05 30.62 0.15 -1.25 16 12 C -0.13 -2.11 6.08 30.67 0.19 -1.93 16 13 C 0.10 1.95 6.34 86.36 0.55 2.50 16 14 N -0.61 -17.03 2.97 -818.90 -2.43 -19.47 16 15 C 0.53 20.95 7.72 87.66 0.68 21.63 16 16 O -0.57 -27.73 15.27 -3.04 -0.05 -27.77 16 17 C -0.12 -5.06 4.50 71.23 0.32 -4.74 16 18 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 19 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 23 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.12 2.78 5.72 86.36 0.49 3.27 16 28 H 0.08 1.06 6.63 -2.39 -0.02 1.04 16 29 H 0.06 1.08 6.43 -2.38 -0.02 1.06 16 30 H 0.02 0.35 8.11 -2.39 -0.02 0.33 16 31 H 0.03 0.39 8.09 -2.39 -0.02 0.37 16 32 H 0.08 0.88 7.86 -2.39 -0.02 0.86 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.71 6.36 -2.39 -0.02 0.70 16 35 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 36 H 0.09 0.94 8.03 -2.39 -0.02 0.92 16 37 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.16 7.80 -2.39 -0.02 1.15 16 41 H 0.03 0.50 8.05 -2.39 -0.02 0.48 16 42 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.77 5.93 -2.39 -0.01 1.75 16 47 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.11 3.98 7.69 -2.39 -0.02 3.96 16 49 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 50 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.06 1.88 7.01 -2.39 -0.02 1.87 16 Total: -1.00 -75.11 417.34 1.95 -73.16 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.87 Total: 18.97 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 6.16 Total: -12.97 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -5.90 Total: -87.33 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -75.11 1.95 -73.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480072630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.244 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds