Wall clock time and date at job start Sat Apr 11 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.50702 * 109.47292 * 119.99914 * 2 1 3 5 5 O 1.21281 * 120.00051 * 119.99870 * 4 2 1 6 6 N 1.34779 * 119.99840 * 300.00191 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.36940 * 119.99699 * 180.02562 * 12 11 8 14 14 H 1.08003 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47251 * 60.00226 * 17 15 13 19 19 H 1.48512 * 109.46986 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47305 * 299.99901 * 17 15 13 21 21 N 1.46505 * 109.47273 * 239.99937 * 2 1 3 22 22 N 1.29021 * 126.43642 * 300.02612 * 21 2 1 23 23 N 1.28733 * 108.80922 * 179.97438 * 22 21 2 24 24 N 1.28842 * 109.39643 * 0.02562 * 23 22 21 25 25 C 1.31073 * 107.99048 * 359.74621 * 24 23 22 26 26 C 1.50704 * 126.66011 * 180.25286 * 25 24 23 27 27 C 1.53005 * 109.46602 * 240.17015 * 26 25 24 28 28 C 1.52992 * 109.47033 * 0.16803 * 26 25 24 29 29 C 1.52991 * 109.47264 * 120.17340 * 26 25 24 30 30 H 1.08999 * 109.47035 * 300.00400 * 1 2 3 31 31 H 1.08999 * 109.47158 * 60.00023 * 1 2 3 32 32 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 40 40 H 0.97001 * 119.99921 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47238 * 59.99998 * 27 26 25 42 42 H 1.09003 * 109.46581 * 179.97438 * 27 26 25 43 43 H 1.08990 * 109.47341 * 299.99805 * 27 26 25 44 44 H 1.09004 * 109.47484 * 60.00515 * 28 26 25 45 45 H 1.09003 * 109.47488 * 180.02562 * 28 26 25 46 46 H 1.09004 * 109.47280 * 300.00291 * 28 26 25 47 47 H 1.08995 * 109.47803 * 59.99618 * 29 26 25 48 48 H 1.09003 * 109.47101 * 180.02562 * 29 26 25 49 49 H 1.09009 * 109.47293 * 299.99404 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6507 8 6 1.6853 -0.2191 4.9000 9 1 1.9743 0.8310 4.8563 10 8 0.2610 -0.3190 4.9602 11 6 2.2949 -0.8645 6.1461 12 7 1.8066 -0.1738 7.3422 13 6 2.2198 -0.5789 8.5833 14 1 2.9060 -1.4073 8.6803 15 6 1.7576 0.0758 9.7167 16 7 0.9226 1.0864 9.5984 17 14 2.3218 -0.4764 11.4097 18 1 3.7990 -0.3556 11.5030 19 1 1.6884 0.3785 12.4458 20 1 1.9261 -1.8911 11.6263 21 7 2.0184 -0.6906 -1.1962 22 7 1.7842 -1.9167 -1.5225 23 7 2.3766 -2.1701 -2.6369 24 7 2.9976 -1.1159 -3.0408 25 6 2.7915 -0.1638 -2.1638 26 6 3.3200 1.2462 -2.2256 27 6 4.1938 1.5173 -0.9992 28 6 4.1546 1.4228 -3.4956 29 6 2.1482 2.2297 -2.2444 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2847 -0.9411 3.6509 35 1 1.8309 -1.9683 3.6506 36 1 -0.0682 -1.2273 5.0012 37 1 2.0059 -1.9145 6.1898 38 1 3.3813 -0.7883 6.1001 39 1 1.1913 0.5709 7.2551 40 1 0.5999 1.5441 10.3904 41 1 5.0286 0.8166 -0.9857 42 1 4.5764 2.5370 -1.0441 43 1 3.5992 1.3915 -0.0944 44 1 3.5321 1.2296 -4.3693 45 1 4.5372 2.4425 -3.5401 46 1 4.9894 0.7220 -3.4821 47 1 1.5536 2.1039 -1.3396 48 1 2.5305 3.2495 -2.2895 49 1 1.5256 2.0365 -3.1181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482736449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:34 Heat of formation + Delta-G solvation = 36.988349 kcal Electronic energy + Delta-G solvation = -30329.734937 eV Core-core repulsion = 26137.129021 eV Total energy + Delta-G solvation = -4192.605916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.48533 -40.40333 -38.06877 -37.78444 -36.12245 -34.78853 -34.12661 -32.43013 -31.60305 -31.27243 -29.18025 -28.06164 -28.01704 -26.19794 -25.42580 -24.17927 -23.52118 -22.50844 -21.61127 -20.80317 -20.37168 -18.46785 -17.64634 -17.24364 -16.96258 -16.42166 -16.33756 -16.13767 -15.54223 -15.20909 -14.71043 -14.65322 -14.54293 -14.18396 -13.80026 -13.77493 -13.40581 -13.21674 -13.09576 -13.05999 -12.92905 -12.78716 -12.61002 -12.45497 -12.34517 -12.30571 -12.03981 -11.99614 -11.72634 -11.52460 -11.30333 -11.17828 -11.03097 -10.86326 -10.77475 -10.43667 -10.27003 -10.16121 -9.90262 -9.63189 -9.46453 -8.97457 -7.02374 -5.83351 -3.13520 0.97546 1.46426 2.01696 2.06617 2.62086 3.35893 3.39471 3.44055 3.44922 3.66277 3.85355 3.96830 4.02098 4.20168 4.40188 4.43117 4.57226 4.58893 4.69341 4.77141 4.84953 4.90213 5.05886 5.06262 5.09504 5.11603 5.21269 5.30468 5.33619 5.41890 5.43017 5.43973 5.48168 5.52749 5.58059 5.61402 5.78722 5.81096 5.84920 5.98307 6.13268 6.39697 6.54659 6.98926 7.61116 7.66764 7.80141 8.34732 8.43645 9.46624 10.01808 10.37654 11.38754 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.001994 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.824703 B =14041.242849 C =14296.638653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 H 0.145 0.855 4 C 0.504 3.496 5 O -0.511 6.511 6 N -0.710 5.710 7 C 0.090 3.910 8 C 0.090 3.910 9 H 0.106 0.894 10 O -0.552 6.552 11 C 0.127 3.873 12 N -0.725 5.725 13 C -0.246 4.246 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 N -0.289 5.289 22 N -0.066 5.066 23 N -0.081 5.081 24 N -0.300 5.300 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.132 4.132 29 C -0.152 4.152 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.407 0.593 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.375 0.625 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 6.017 -25.929 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.162 0.838 4 C 0.286 3.714 5 O -0.385 6.385 6 N -0.363 5.363 7 C -0.034 4.034 8 C 0.030 3.970 9 H 0.123 0.877 10 O -0.357 6.357 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 N -0.091 5.091 22 N -0.051 5.051 23 N -0.074 5.074 24 N -0.148 5.148 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.210 4.210 28 C -0.189 4.189 29 C -0.210 4.210 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.223 0.777 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.224 0.776 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.291 4.485 -26.400 26.809 hybrid contribution -0.106 0.430 1.628 1.687 sum 1.185 4.915 -24.772 25.283 Atomic orbital electron populations 1.22210 0.89066 1.05830 1.05066 1.21949 0.98658 0.97163 0.81193 0.83768 1.20073 0.81592 0.85361 0.84413 1.90847 1.36614 1.24931 1.86123 1.45785 1.53319 1.32351 1.04798 1.22235 1.00475 0.97045 0.83664 1.22389 0.81632 1.00869 0.92113 0.87652 1.86568 1.19766 1.32785 1.96579 1.21183 0.96874 0.95397 0.86773 1.42203 1.55719 1.39001 1.00090 1.19164 1.22343 1.12631 0.83599 0.91256 1.24763 0.99751 0.98300 0.97925 1.69662 1.35814 1.23666 1.28625 0.86251 0.78051 0.77772 0.83978 1.21205 1.21607 1.21200 1.48017 1.34402 1.08736 1.17911 1.78940 1.19270 0.96233 1.10706 1.78645 1.07362 1.17969 1.03403 1.74976 1.19530 0.96533 1.23718 1.26037 0.95696 0.99615 0.87077 1.19276 0.96415 0.84072 0.99296 1.22096 0.99894 1.03780 0.95180 1.21750 0.99887 1.02482 0.94821 1.22114 0.96835 0.99351 1.02678 0.88338 0.90071 0.89604 0.75738 0.90071 0.90550 0.77736 0.95876 0.95366 0.77632 0.93371 0.91283 0.89878 0.92703 0.91335 0.91117 0.91327 0.92353 0.89917 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.31 37.16 0.35 -0.54 16 2 C 0.12 0.88 2.25 -69.08 -0.16 0.73 16 3 H 0.15 0.64 3.73 -51.93 -0.19 0.45 16 4 C 0.50 5.33 7.19 -10.98 -0.08 5.25 16 5 O -0.51 -7.91 15.88 5.56 0.09 -7.82 16 6 N -0.71 -6.29 5.40 -60.29 -0.33 -6.62 16 7 C 0.09 0.99 5.31 -4.04 -0.02 0.97 16 8 C 0.09 1.19 3.09 -26.73 -0.08 1.11 16 9 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 10 O -0.55 -7.61 13.03 -35.23 -0.46 -8.07 16 11 C 0.13 2.28 5.92 -4.04 -0.02 2.25 16 12 N -0.72 -17.50 5.49 -59.91 -0.33 -17.83 16 13 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 17 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 N -0.29 -3.14 2.76 -52.92 -0.15 -3.29 16 22 N -0.07 -0.95 12.42 60.35 0.75 -0.20 16 23 N -0.08 -1.24 13.43 60.35 0.81 -0.42 16 24 N -0.30 -4.00 11.71 32.70 0.38 -3.62 16 25 C 0.19 2.00 6.40 -155.43 -1.00 1.00 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.04 16 27 C -0.15 -0.85 8.31 37.16 0.31 -0.54 16 28 C -0.13 -0.75 8.00 37.15 0.30 -0.45 16 29 C -0.15 -0.57 8.31 37.15 0.31 -0.26 16 30 H 0.10 0.32 7.56 -51.93 -0.39 -0.08 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 2.63 7.89 -40.82 -0.32 2.31 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.38 4.35 9.05 45.56 0.41 4.76 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.39 10.03 7.54 -40.82 -0.31 9.72 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.30 5.58 -51.93 -0.29 0.01 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.16 5.58 -51.93 -0.29 -0.13 16 48 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -37.06 401.44 -4.79 -41.85 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.85 Total: 7.64 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.46 Total: 2.22 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 1.87 Total: -58.81 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.37 Total: -15.89 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.06 -4.79 -41.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482736449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.839 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds