Wall clock time and date at job start Sat Apr 11 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.50702 * 109.47292 * 119.99914 * 2 1 3 5 5 O 1.21281 * 120.00051 * 119.99870 * 4 2 1 6 6 N 1.34779 * 119.99840 * 300.00191 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.36940 * 119.99699 * 180.02562 * 12 11 8 14 14 H 1.08003 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47251 * 60.00226 * 17 15 13 19 19 H 1.48512 * 109.46986 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47305 * 299.99901 * 17 15 13 21 21 N 1.46505 * 109.47273 * 239.99937 * 2 1 3 22 22 N 1.29021 * 126.43642 * 300.02612 * 21 2 1 23 23 N 1.28733 * 108.80922 * 179.97438 * 22 21 2 24 24 N 1.28842 * 109.39643 * 0.02562 * 23 22 21 25 25 C 1.31073 * 107.99048 * 359.74621 * 24 23 22 26 26 C 1.50704 * 126.66011 * 180.25286 * 25 24 23 27 27 C 1.53005 * 109.46602 * 240.17015 * 26 25 24 28 28 C 1.52992 * 109.47033 * 0.16803 * 26 25 24 29 29 C 1.52991 * 109.47264 * 120.17340 * 26 25 24 30 30 H 1.08999 * 109.47035 * 300.00400 * 1 2 3 31 31 H 1.08999 * 109.47158 * 60.00023 * 1 2 3 32 32 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 40 40 H 0.97001 * 119.99921 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47238 * 59.99998 * 27 26 25 42 42 H 1.09003 * 109.46581 * 179.97438 * 27 26 25 43 43 H 1.08990 * 109.47341 * 299.99805 * 27 26 25 44 44 H 1.09004 * 109.47484 * 60.00515 * 28 26 25 45 45 H 1.09003 * 109.47488 * 180.02562 * 28 26 25 46 46 H 1.09004 * 109.47280 * 300.00291 * 28 26 25 47 47 H 1.08995 * 109.47803 * 59.99618 * 29 26 25 48 48 H 1.09003 * 109.47101 * 180.02562 * 29 26 25 49 49 H 1.09009 * 109.47293 * 299.99404 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6507 8 6 1.6853 -0.2191 4.9000 9 1 1.9743 0.8310 4.8563 10 8 0.2610 -0.3190 4.9602 11 6 2.2949 -0.8645 6.1461 12 7 1.8066 -0.1738 7.3422 13 6 2.2198 -0.5789 8.5833 14 1 2.9060 -1.4073 8.6803 15 6 1.7576 0.0758 9.7167 16 7 0.9226 1.0864 9.5984 17 14 2.3218 -0.4764 11.4097 18 1 3.7990 -0.3556 11.5030 19 1 1.6884 0.3785 12.4458 20 1 1.9261 -1.8911 11.6263 21 7 2.0184 -0.6906 -1.1962 22 7 1.7842 -1.9167 -1.5225 23 7 2.3766 -2.1701 -2.6369 24 7 2.9976 -1.1159 -3.0408 25 6 2.7915 -0.1638 -2.1638 26 6 3.3200 1.2462 -2.2256 27 6 4.1938 1.5173 -0.9992 28 6 4.1546 1.4228 -3.4956 29 6 2.1482 2.2297 -2.2444 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2847 -0.9411 3.6509 35 1 1.8309 -1.9683 3.6506 36 1 -0.0682 -1.2273 5.0012 37 1 2.0059 -1.9145 6.1898 38 1 3.3813 -0.7883 6.1001 39 1 1.1913 0.5709 7.2551 40 1 0.5999 1.5441 10.3904 41 1 5.0286 0.8166 -0.9857 42 1 4.5764 2.5370 -1.0441 43 1 3.5992 1.3915 -0.0944 44 1 3.5321 1.2296 -4.3693 45 1 4.5372 2.4425 -3.5401 46 1 4.9894 0.7220 -3.4821 47 1 1.5536 2.1039 -1.3396 48 1 2.5305 3.2495 -2.2895 49 1 1.5256 2.0365 -3.1181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482736449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:33 Heat of formation + Delta-G solvation = 5.735613 kcal Electronic energy + Delta-G solvation = -30331.090157 eV Core-core repulsion = 26137.129021 eV Total energy + Delta-G solvation = -4193.961136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.37866 -41.29207 -39.08704 -38.47324 -36.92799 -36.13071 -35.53307 -33.34535 -33.06346 -32.32840 -30.48807 -28.52115 -28.33714 -27.33749 -26.45843 -25.00008 -24.85394 -23.76264 -22.80416 -21.65293 -21.04498 -19.43680 -19.09751 -18.41570 -17.84527 -17.51636 -17.31167 -16.78866 -16.51925 -16.37070 -16.10616 -15.54976 -15.30782 -15.13997 -14.95646 -14.78247 -14.43397 -14.25017 -14.09832 -13.82730 -13.75695 -13.56931 -13.29768 -13.26471 -13.05346 -12.96198 -12.94457 -12.73426 -12.72788 -12.71065 -12.31820 -12.20804 -12.18595 -12.05013 -11.98188 -11.81349 -11.79608 -11.34308 -11.08788 -10.97513 -10.84578 -10.34782 -9.00852 -7.95239 -5.24194 0.11791 0.73711 1.11262 1.19849 1.48104 1.50214 1.56421 1.80429 2.55368 2.74581 2.99164 3.27788 3.33963 3.36826 3.42876 3.49135 3.57063 3.78321 3.92804 4.00783 4.02305 4.19578 4.23884 4.38097 4.42333 4.44003 4.54090 4.58154 4.61139 4.67699 4.69302 4.78457 4.86251 4.92184 4.93311 4.93416 4.98342 5.05332 5.11273 5.21787 5.22899 5.28927 5.37583 5.48019 6.22612 6.26563 6.77435 6.90992 7.34045 7.48768 8.09268 8.32647 9.27409 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.001994 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.824703 B =14041.242849 C =14296.638653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 H 0.183 0.817 4 C 0.505 3.495 5 O -0.565 6.565 6 N -0.692 5.692 7 C 0.102 3.898 8 C 0.111 3.889 9 H 0.111 0.889 10 O -0.560 6.560 11 C 0.120 3.880 12 N -0.738 5.738 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.073 4.073 16 N -0.965 5.965 17 Si 0.972 3.028 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.279 1.279 21 N -0.286 5.286 22 N -0.092 5.092 23 N -0.115 5.115 24 N -0.328 5.328 25 C 0.203 3.797 26 C 0.012 3.988 27 C -0.152 4.152 28 C -0.131 4.131 29 C -0.151 4.151 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.423 0.577 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.385 0.615 37 H 0.027 0.973 38 H 0.032 0.968 39 H 0.379 0.621 40 H 0.252 0.748 41 H 0.045 0.955 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 8.121 -26.117 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.199 0.801 4 C 0.289 3.711 5 O -0.443 6.443 6 N -0.345 5.345 7 C -0.023 4.023 8 C 0.051 3.949 9 H 0.129 0.871 10 O -0.366 6.366 11 C -0.008 4.008 12 N -0.381 5.381 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.265 4.265 16 N -0.615 5.615 17 Si 0.800 3.200 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.206 1.206 21 N -0.088 5.088 22 N -0.078 5.078 23 N -0.108 5.108 24 N -0.176 5.176 25 C -0.075 4.075 26 C 0.009 3.991 27 C -0.209 4.209 28 C -0.189 4.189 29 C -0.209 4.209 30 H 0.146 0.854 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.261 0.739 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.211 0.789 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.163 6.585 -26.605 27.433 hybrid contribution -0.030 -0.225 1.650 1.665 sum 1.133 6.361 -24.955 25.778 Atomic orbital electron populations 1.22307 0.87050 1.05169 1.07443 1.22354 1.00136 0.97807 0.78576 0.80057 1.20537 0.80561 0.84660 0.85374 1.90838 1.39147 1.27417 1.86884 1.45566 1.52843 1.32393 1.03745 1.21926 1.00197 0.96643 0.83496 1.22084 0.81243 1.00800 0.90774 0.87132 1.86550 1.19758 1.33845 1.96496 1.21408 0.97195 0.95380 0.86801 1.42363 1.55596 1.39123 1.01047 1.19572 1.21451 1.12065 0.85075 0.90838 1.25546 1.00594 0.98906 1.01484 1.69806 1.37510 1.25109 1.29091 0.85248 0.77762 0.77304 0.79636 1.20414 1.22107 1.20563 1.48244 1.34051 1.07909 1.18613 1.78840 1.20057 0.98129 1.10742 1.78593 1.08604 1.19315 1.04277 1.74887 1.20398 0.97000 1.25296 1.26876 0.94082 1.00632 0.85889 1.19616 0.97616 0.82057 0.99831 1.22142 0.99057 1.04973 0.94770 1.21773 0.99059 1.03722 0.94332 1.22174 0.95764 0.99757 1.03173 0.85424 0.88202 0.91803 0.73865 0.90355 0.91034 0.76614 0.95537 0.94968 0.78859 0.93945 0.93534 0.86845 0.92385 0.92141 0.88146 0.93261 0.91049 0.87214 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.31 71.98 0.67 -0.65 16 2 C 0.12 1.50 2.25 44.25 0.10 1.60 16 3 H 0.18 0.90 3.73 -2.39 -0.01 0.89 16 4 C 0.50 9.93 7.19 87.66 0.63 10.56 16 5 O -0.56 -17.51 15.88 -3.03 -0.05 -17.55 16 6 N -0.69 -10.63 5.40 -463.06 -2.50 -13.13 16 7 C 0.10 2.09 5.31 86.38 0.46 2.55 16 8 C 0.11 2.74 3.09 30.60 0.09 2.84 16 9 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 10 O -0.56 -14.35 13.03 -148.98 -1.94 -16.29 16 11 C 0.12 4.17 5.92 86.38 0.51 4.68 16 12 N -0.74 -35.19 5.49 -343.46 -1.89 -37.08 16 13 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 14 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 16 N -0.96 -57.49 13.06 21.65 0.28 -57.20 16 17 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 N -0.29 -6.04 2.76 -321.35 -0.89 -6.92 16 22 N -0.09 -2.71 12.42 37.02 0.46 -2.25 16 23 N -0.11 -3.69 13.43 37.01 0.50 -3.19 16 24 N -0.33 -9.05 11.71 -50.45 -0.59 -9.64 16 25 C 0.20 4.08 6.40 138.14 0.88 4.96 16 26 C 0.01 0.13 0.75 -52.93 -0.04 0.09 16 27 C -0.15 -1.29 8.31 71.98 0.60 -0.69 16 28 C -0.13 -1.29 8.00 71.98 0.58 -0.71 16 29 C -0.15 -0.56 8.31 71.98 0.60 0.04 16 30 H 0.13 0.29 7.56 -2.39 -0.02 0.28 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.42 3.96 7.89 -92.71 -0.73 3.23 16 34 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.38 8.26 9.05 -74.06 -0.67 7.59 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.38 19.43 7.54 -92.71 -0.70 18.73 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.06 0.44 5.58 -2.39 -0.01 0.43 16 44 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 0.07 5.58 -2.39 -0.01 0.06 16 48 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 Total: -1.00 -83.70 401.44 0.70 -82.99 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -1.10 Total: 24.21 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.39 Total: 9.01 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -4.62 Total: -129.42 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.99 Total: -33.84 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -83.70 0.70 -82.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482736449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.727 kcal (2) G-P(sol) polarization free energy of solvation -83.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds