Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47669 * 2 1 4 4 C 1.50704 * 109.47114 * 120.00300 * 2 1 3 5 5 O 1.21276 * 120.00499 * 119.99677 * 4 2 1 6 6 N 1.34783 * 119.99567 * 299.99827 * 4 2 1 7 7 C 1.46497 * 119.99638 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46900 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.47164 * 60.00014 * 8 7 6 10 10 O 1.42903 * 109.47171 * 299.99748 * 8 7 6 11 11 C 1.53003 * 109.47376 * 180.02562 * 8 7 6 12 12 N 1.46494 * 109.47283 * 185.00021 * 11 8 7 13 13 C 1.36937 * 120.00022 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00269 * 0.02562 * 13 12 11 15 15 C 1.38819 * 120.00106 * 179.97438 * 13 12 11 16 16 N 1.31616 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46930 * 60.00673 * 17 15 13 19 19 H 1.48496 * 109.46947 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47190 * 300.00622 * 17 15 13 21 21 N 1.46499 * 109.47271 * 239.99803 * 2 1 3 22 22 N 1.29026 * 126.43855 * 300.02863 * 21 2 1 23 23 N 1.28734 * 108.80949 * 179.97438 * 22 21 2 24 24 N 1.28846 * 109.39664 * 0.02562 * 23 22 21 25 25 C 1.31073 * 107.98979 * 359.75030 * 24 23 22 26 26 C 1.50695 * 126.65707 * 180.24559 * 25 24 23 27 27 C 1.53007 * 109.46883 * 240.17184 * 26 25 24 28 28 C 1.52996 * 109.47480 * 0.17038 * 26 25 24 29 29 C 1.53004 * 109.47267 * 120.17357 * 26 25 24 30 30 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47096 * 300.00223 * 1 2 3 32 32 H 1.08997 * 109.46665 * 59.99897 * 1 2 3 33 33 H 0.96996 * 120.00052 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.47200 * 60.00094 * 7 6 4 35 35 H 1.08997 * 109.47487 * 300.00148 * 7 6 4 36 36 H 0.96700 * 114.00311 * 300.00378 * 10 8 7 37 37 H 1.09005 * 109.46682 * 304.99749 * 11 8 7 38 38 H 1.08999 * 109.47221 * 64.99915 * 11 8 7 39 39 H 0.96999 * 120.00388 * 359.97438 * 12 11 8 40 40 H 0.96997 * 120.00150 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47159 * 60.00307 * 27 26 25 42 42 H 1.08996 * 109.47046 * 180.02562 * 27 26 25 43 43 H 1.08998 * 109.46796 * 300.00342 * 27 26 25 44 44 H 1.09001 * 109.47149 * 60.00028 * 28 26 25 45 45 H 1.09000 * 109.47483 * 180.02562 * 28 26 25 46 46 H 1.09002 * 109.47294 * 300.00141 * 28 26 25 47 47 H 1.09001 * 109.46619 * 59.99857 * 29 26 25 48 48 H 1.09000 * 109.46859 * 179.97438 * 29 26 25 49 49 H 1.08993 * 109.46935 * 299.99926 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6507 8 6 1.6841 -0.2200 4.9000 9 1 0.5941 -0.2199 4.8995 10 8 2.1606 1.1273 4.9005 11 6 2.1941 -0.9412 6.1493 12 7 1.6096 -0.3239 7.3423 13 6 1.9225 -0.8053 8.5855 14 1 2.6006 -1.6398 8.6865 15 6 1.3691 -0.2201 9.7160 16 7 0.5431 0.7973 9.5930 17 14 1.7955 -0.8773 11.4118 18 1 3.2600 -0.7672 11.6314 19 1 1.0789 -0.0858 12.4439 20 1 1.3861 -2.3014 11.5081 21 7 2.0183 -0.6906 -1.1961 22 7 1.7841 -1.9168 -1.5224 23 7 2.3766 -2.1702 -2.6369 24 7 2.9976 -1.1159 -3.0407 25 6 2.7915 -0.1639 -2.1637 26 6 3.3202 1.2460 -2.2254 27 6 4.1940 1.5170 -0.9990 28 6 4.1549 1.4226 -3.4954 29 6 2.1485 2.2297 -2.2442 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.1488 0.5384 2.5436 34 1 3.2845 -0.9414 3.6509 35 1 1.8308 -1.9684 3.6506 36 1 3.1246 1.2036 4.9009 37 1 1.9060 -1.9916 6.1054 38 1 3.2804 -0.8640 6.1954 39 1 1.0008 0.4258 7.2517 40 1 0.1560 1.2060 10.3830 41 1 5.0288 0.8162 -0.9856 42 1 4.5761 2.5369 -1.0433 43 1 3.5994 1.3911 -0.0942 44 1 3.5324 1.2295 -4.3691 45 1 4.5377 2.4422 -3.5397 46 1 4.9897 0.7218 -3.4819 47 1 1.5539 2.1038 -1.3394 48 1 2.5310 3.2494 -2.2884 49 1 1.5260 2.0366 -3.1178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482736451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = 36.908508 kcal Electronic energy + Delta-G solvation = -30348.073863 eV Core-core repulsion = 26155.464485 eV Total energy + Delta-G solvation = -4192.609378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.48431 -40.40514 -38.07584 -37.79390 -36.12281 -34.77574 -34.15253 -32.42948 -31.60596 -31.28449 -29.18404 -28.06130 -28.01559 -26.19938 -25.42760 -24.17863 -23.52130 -22.50115 -21.62033 -20.80981 -20.37717 -18.47075 -17.64717 -17.25004 -16.97672 -16.42528 -16.26741 -16.11309 -15.74812 -15.06485 -14.74194 -14.65597 -14.54204 -14.18025 -13.87909 -13.72526 -13.39733 -13.22510 -13.10539 -13.04602 -12.93426 -12.78399 -12.62976 -12.46968 -12.33837 -12.30427 -12.04111 -12.00186 -11.72600 -11.52378 -11.30257 -11.17833 -11.04115 -10.85950 -10.78634 -10.43612 -10.28069 -10.15983 -9.90567 -9.64442 -9.46382 -8.97613 -7.02684 -5.83569 -3.13706 0.97510 1.46419 2.01964 2.06606 2.61734 3.35992 3.39500 3.44052 3.44955 3.66804 3.85438 3.96294 4.02084 4.20256 4.40262 4.43640 4.55848 4.58682 4.68884 4.76168 4.85071 4.89278 5.04440 5.06253 5.09635 5.11551 5.21340 5.30212 5.33532 5.41226 5.43065 5.45300 5.48046 5.52671 5.58974 5.61404 5.78367 5.81097 5.84930 5.97901 6.12744 6.40018 6.53981 6.99539 7.60989 7.66595 7.77267 8.34399 8.43626 9.46262 10.01279 10.36853 11.38596 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.001997 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.292021 B =14017.154952 C =14375.635325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 H 0.146 0.854 4 C 0.504 3.496 5 O -0.511 6.511 6 N -0.709 5.709 7 C 0.090 3.910 8 C 0.089 3.911 9 H 0.107 0.893 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.725 5.725 13 C -0.246 4.246 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 N -0.289 5.289 22 N -0.066 5.066 23 N -0.080 5.080 24 N -0.300 5.300 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.151 4.151 28 C -0.132 4.132 29 C -0.152 4.152 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.408 0.592 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.388 0.612 40 H 0.257 0.743 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 7.206 -25.942 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.163 0.837 4 C 0.286 3.714 5 O -0.385 6.385 6 N -0.362 5.362 7 C -0.034 4.034 8 C 0.030 3.970 9 H 0.125 0.875 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 N -0.091 5.091 22 N -0.051 5.051 23 N -0.074 5.074 24 N -0.148 5.148 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.209 4.209 28 C -0.189 4.189 29 C -0.210 4.210 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.221 0.779 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.176 5.144 -26.390 26.975 hybrid contribution 0.361 0.791 1.616 1.835 sum 2.537 5.934 -24.774 25.600 Atomic orbital electron populations 1.22211 0.89138 1.05825 1.05048 1.21946 0.98619 0.97199 0.81193 0.83712 1.20070 0.81626 0.85330 0.84412 1.90845 1.36625 1.24930 1.86122 1.45767 1.53467 1.32248 1.04760 1.22218 1.00159 0.97388 0.83672 1.22416 1.00051 0.82451 0.92121 0.87494 1.86575 1.26818 1.25551 1.96818 1.21190 0.96435 0.95808 0.86722 1.42210 1.55397 1.39244 1.00172 1.19164 1.22793 1.12210 0.83570 0.91241 1.24765 0.99728 0.98309 0.97942 1.69657 1.34385 1.25011 1.28741 0.86246 0.77743 0.78062 0.83982 1.21204 1.21607 1.21191 1.48018 1.34407 1.08736 1.17915 1.78944 1.19271 0.96230 1.10705 1.78647 1.07358 1.17965 1.03400 1.74978 1.19536 0.96535 1.23715 1.26036 0.95690 0.99614 0.87073 1.19278 0.96418 0.84072 0.99295 1.22094 0.99883 1.03754 0.95196 1.21750 0.99884 1.02479 0.94828 1.22115 0.96836 0.99350 1.02674 0.89575 0.88438 0.90024 0.75668 0.90695 0.89925 0.77902 0.95305 0.95880 0.77719 0.93365 0.91310 0.89886 0.92680 0.91338 0.91116 0.91334 0.92353 0.89913 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.30 37.16 0.35 -0.54 16 2 C 0.12 0.88 2.25 -69.08 -0.16 0.73 16 3 H 0.15 0.65 3.73 -51.93 -0.19 0.45 16 4 C 0.50 5.32 7.19 -10.98 -0.08 5.25 16 5 O -0.51 -7.91 15.88 5.56 0.09 -7.82 16 6 N -0.71 -6.29 5.34 -60.30 -0.32 -6.62 16 7 C 0.09 0.99 5.34 -4.04 -0.02 0.97 16 8 C 0.09 1.19 3.09 -26.73 -0.08 1.11 16 9 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 10 O -0.55 -7.36 13.03 -35.23 -0.46 -7.82 16 11 C 0.13 2.29 5.90 -4.04 -0.02 2.27 16 12 N -0.73 -17.52 5.55 -59.91 -0.33 -17.86 16 13 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 17 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 N -0.29 -3.14 2.76 -52.93 -0.15 -3.29 16 22 N -0.07 -0.95 12.42 60.35 0.75 -0.20 16 23 N -0.08 -1.23 13.43 60.35 0.81 -0.42 16 24 N -0.30 -4.00 11.71 32.70 0.38 -3.62 16 25 C 0.19 2.00 6.40 -155.44 -1.00 1.00 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.04 16 27 C -0.15 -0.84 8.31 37.16 0.31 -0.53 16 28 C -0.13 -0.74 8.00 37.16 0.30 -0.44 16 29 C -0.15 -0.57 8.31 37.16 0.31 -0.26 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.29 7.56 -51.93 -0.39 -0.10 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.41 2.67 7.76 -40.82 -0.32 2.35 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.37 4.05 9.05 45.56 0.41 4.46 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.39 10.01 7.67 -40.82 -0.31 9.70 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.30 5.58 -51.93 -0.29 0.01 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.17 5.58 -51.93 -0.29 -0.12 16 48 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -37.07 401.43 -4.79 -41.86 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.85 Total: 7.40 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.46 Total: 2.23 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 1.87 Total: -58.86 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.37 Total: -15.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.07 -4.79 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482736451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.765 kcal (2) G-P(sol) polarization free energy of solvation -37.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds