Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.47508 * 304.99882 * 8 7 6 10 10 O 1.42895 * 109.47159 * 64.99731 * 8 7 6 11 11 C 1.53001 * 109.47200 * 184.99961 * 8 7 6 12 12 N 1.46509 * 109.47219 * 179.97438 * 11 8 7 13 13 C 1.36933 * 119.99853 * 179.97438 * 12 11 8 14 14 H 1.07992 * 120.00560 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99408 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99494 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00258 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.46945 * 90.00188 * 17 15 13 19 19 H 1.48502 * 109.46896 * 210.00100 * 17 15 13 20 20 H 1.48493 * 109.47237 * 329.99689 * 17 15 13 21 21 N 1.46499 * 109.46879 * 119.99323 * 2 1 3 22 22 N 1.29025 * 126.43682 * 60.03061 * 21 2 1 23 23 N 1.28737 * 108.80837 * 179.97438 * 22 21 2 24 24 N 1.28844 * 109.39839 * 359.97438 * 23 22 21 25 25 C 1.31075 * 107.98929 * 359.75252 * 24 23 22 26 26 C 1.50704 * 126.65719 * 180.24528 * 25 24 23 27 27 C 1.52997 * 109.46687 * 240.16899 * 26 25 24 28 28 C 1.52994 * 109.47363 * 0.16953 * 26 25 24 29 29 C 1.52998 * 109.46801 * 120.17486 * 26 25 24 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 34 34 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 35 35 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 36 36 H 0.96701 * 113.99770 * 60.00399 * 10 8 7 37 37 H 1.08994 * 109.47308 * 299.99966 * 11 8 7 38 38 H 1.09003 * 109.47254 * 60.00178 * 11 8 7 39 39 H 0.96998 * 119.99864 * 0.02562 * 12 11 8 40 40 H 0.97001 * 120.00202 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47285 * 60.00673 * 27 26 25 42 42 H 1.09004 * 109.47203 * 180.02562 * 27 26 25 43 43 H 1.09001 * 109.47153 * 299.99941 * 27 26 25 44 44 H 1.09000 * 109.46900 * 60.00310 * 28 26 25 45 45 H 1.08998 * 109.46979 * 179.97438 * 28 26 25 46 46 H 1.09005 * 109.47029 * 300.00024 * 28 26 25 47 47 H 1.09001 * 109.47795 * 59.99596 * 29 26 25 48 48 H 1.08998 * 109.47103 * 179.97438 * 29 26 25 49 49 H 1.09000 * 109.47211 * 299.99536 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 1 0.6124 -0.1327 -4.8602 10 8 2.2679 1.0997 -4.9545 11 6 2.1090 -0.9967 -6.1464 12 7 1.6241 -0.3037 -7.3427 13 6 1.8739 -0.8247 -8.5842 14 1 2.4279 -1.7465 -8.6815 15 6 1.4149 -0.1677 -9.7176 16 7 1.6545 -0.6687 -10.9109 17 14 0.4572 1.4272 -9.5493 18 1 1.3994 2.5748 -9.5689 19 1 -0.4987 1.5522 -10.6789 20 1 -0.2906 1.4226 -8.2664 21 7 2.0182 -0.6905 1.1963 22 7 1.7848 -1.9169 1.5222 23 7 2.3778 -2.1703 2.6364 24 7 2.9983 -1.1159 3.0404 25 6 2.8003 -0.1667 2.1584 26 6 3.3401 1.2393 2.2132 27 6 2.1760 2.2319 2.2349 28 6 4.1824 1.4133 3.4785 29 6 4.2097 1.4999 0.9817 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1537 0.5418 -2.5435 34 1 3.2948 -0.9335 -3.6463 35 1 1.8419 -1.9618 -3.6548 36 1 3.2342 1.1075 -4.9919 37 1 3.1955 -1.0740 -6.1862 38 1 1.6750 -1.9957 -6.1047 39 1 1.1268 0.5245 -7.2553 40 1 1.3341 -0.2095 -11.7030 41 1 1.5564 2.0462 3.1123 42 1 2.5663 3.2489 2.2741 43 1 1.5759 2.1079 1.3334 44 1 5.0117 0.7061 3.4630 45 1 4.5731 2.4301 3.5178 46 1 3.5627 1.2275 4.3559 47 1 3.6096 1.3759 0.0802 48 1 4.5997 2.5170 1.0210 49 1 5.0390 0.7927 0.9661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482736452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = 40.861891 kcal Electronic energy + Delta-G solvation = -30435.751174 eV Core-core repulsion = 26243.313227 eV Total energy + Delta-G solvation = -4192.437946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.52233 -40.47350 -38.17274 -37.88626 -36.17603 -34.89926 -34.29801 -32.48516 -31.67569 -31.43954 -29.55426 -28.09765 -28.05767 -26.36139 -25.57740 -24.21659 -23.48358 -22.30767 -21.68092 -20.86678 -20.43367 -18.53953 -17.86585 -17.64828 -17.03030 -16.45621 -16.33363 -16.18538 -15.85410 -15.11828 -14.81291 -14.72732 -14.59078 -14.21202 -13.91115 -13.82528 -13.48174 -13.33042 -13.27029 -13.10008 -12.98348 -12.83947 -12.65601 -12.49866 -12.38440 -12.34687 -12.15513 -12.07725 -11.76155 -11.56719 -11.39323 -11.34522 -11.21761 -10.98717 -10.93243 -10.50019 -10.27802 -10.20268 -9.89528 -9.64565 -9.54461 -9.01131 -7.34568 -5.84627 -3.21710 0.93179 1.42167 1.95726 2.03106 2.54339 3.32039 3.32581 3.36597 3.40535 3.61412 3.80159 3.90755 3.95861 4.16464 4.34953 4.36345 4.49027 4.52640 4.54417 4.69036 4.80596 4.83536 4.93655 5.02165 5.05883 5.07627 5.17618 5.25873 5.28098 5.30043 5.36829 5.39146 5.42441 5.47011 5.50279 5.57730 5.64909 5.68791 5.77991 5.80683 5.92583 6.30648 6.41580 6.90985 7.57217 7.63687 7.90356 8.33505 8.39968 9.12529 9.84115 10.03257 11.33262 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.002144 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.184738 B =13054.479465 C =13477.812419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 H 0.146 0.854 4 C 0.504 3.496 5 O -0.509 6.509 6 N -0.711 5.711 7 C 0.090 3.910 8 C 0.086 3.914 9 H 0.106 0.894 10 O -0.557 6.557 11 C 0.131 3.869 12 N -0.749 5.749 13 C -0.250 4.250 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.889 3.111 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.277 1.277 21 N -0.290 5.290 22 N -0.066 5.066 23 N -0.080 5.080 24 N -0.299 5.299 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.132 4.132 29 C -0.151 4.151 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.377 0.623 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.366 0.634 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 10.340 29.122 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.163 0.837 4 C 0.286 3.714 5 O -0.383 6.383 6 N -0.364 5.364 7 C -0.034 4.034 8 C 0.026 3.974 9 H 0.124 0.876 10 O -0.362 6.362 11 C 0.002 3.998 12 N -0.395 5.395 13 C -0.380 4.380 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.579 5.579 17 Si 0.719 3.281 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.203 1.203 21 N -0.091 5.091 22 N -0.051 5.051 23 N -0.073 5.073 24 N -0.147 5.147 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.210 4.210 28 C -0.190 4.190 29 C -0.209 4.209 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.242 0.758 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.200 0.800 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.090 8.252 29.552 30.683 hybrid contribution -0.358 1.956 -0.735 2.120 sum -0.449 10.207 28.817 30.575 Atomic orbital electron populations 1.22206 0.89152 1.05842 1.05001 1.21940 0.98614 0.97200 0.81206 0.83718 1.20077 0.81616 0.85338 0.84393 1.90855 1.36463 1.24881 1.86093 1.45773 1.53559 1.32243 1.04830 1.22201 1.00248 0.97457 0.83456 1.22454 0.99058 0.83423 0.92497 0.87596 1.86538 1.25761 1.27227 1.96675 1.21160 0.97814 0.95125 0.85666 1.42543 1.67462 1.27697 1.01821 1.19030 1.30343 1.06972 0.81665 0.89248 1.24693 1.00601 0.98686 0.95045 1.69708 1.50785 1.40464 0.96933 0.86482 0.80118 0.84645 0.76827 1.21002 1.21767 1.20326 1.48019 1.34151 1.08848 1.18115 1.78947 1.19337 0.96099 1.10766 1.78652 1.07423 1.17878 1.03334 1.74984 1.19600 0.96622 1.23506 1.26042 0.95530 0.99686 0.87131 1.19277 0.96337 0.84138 0.99309 1.22116 0.96925 0.99278 1.02651 1.21751 0.99813 1.02510 0.94882 1.22090 0.99918 1.03800 0.95106 0.88537 0.89542 0.89996 0.75804 0.90482 0.89733 0.77500 0.94974 0.94411 0.80017 0.92943 0.91323 0.89919 0.92402 0.91313 0.91109 0.91314 0.92727 0.89887 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.31 37.16 0.35 -0.45 16 2 C 0.12 0.83 2.25 -69.08 -0.16 0.67 16 3 H 0.15 0.58 3.73 -51.92 -0.19 0.38 16 4 C 0.50 5.03 7.18 -10.98 -0.08 4.95 16 5 O -0.51 -7.62 15.88 5.55 0.09 -7.53 16 6 N -0.71 -5.75 5.40 -60.30 -0.33 -6.08 16 7 C 0.09 0.92 5.31 -4.04 -0.02 0.90 16 8 C 0.09 1.03 3.09 -26.73 -0.08 0.95 16 9 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 10 O -0.56 -6.70 13.03 -35.23 -0.46 -7.16 16 11 C 0.13 2.21 5.92 -4.04 -0.02 2.19 16 12 N -0.75 -16.79 5.30 -59.91 -0.32 -17.10 16 13 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 17 Si 0.89 21.64 27.74 -169.99 -4.71 16.93 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 21 N -0.29 -3.03 2.76 -52.93 -0.15 -3.18 16 22 N -0.07 -0.93 12.42 60.35 0.75 -0.18 16 23 N -0.08 -1.20 13.43 60.35 0.81 -0.39 16 24 N -0.30 -3.91 11.71 32.70 0.38 -3.53 16 25 C 0.19 1.94 6.40 -155.43 -1.00 0.94 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.04 16 27 C -0.15 -0.52 8.31 37.16 0.31 -0.21 16 28 C -0.13 -0.71 8.00 37.15 0.30 -0.41 16 29 C -0.15 -0.79 8.31 37.16 0.31 -0.48 16 30 H 0.10 0.23 7.57 -51.93 -0.39 -0.17 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.41 2.27 7.90 -40.82 -0.32 1.95 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.38 3.66 9.05 45.56 0.41 4.08 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.37 8.13 5.41 -40.82 -0.22 7.91 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.06 0.14 5.57 -51.93 -0.29 -0.15 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.28 5.59 -51.93 -0.29 -0.01 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -38.07 398.34 -4.43 -42.50 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.81 Total: 5.72 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.47 Total: 2.02 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 1.93 Total: -58.48 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.37 Total: -14.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.07 -4.43 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482736452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.361 kcal (2) G-P(sol) polarization free energy of solvation -38.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds